RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 PLEKHG3A1L390 1219 aa10.59□□□□□ -0.71
NUP88-205ENST00000572809 PRKCSHP14314 528 aaPredicted RBP10.59□□□□□ -0.71
NUP88-205ENST00000572809 UNC5CLQ8IV45 518 aa10.59□□□□□ -0.71
NUP88-205ENST00000572809 ROCK2O75116 1388 aaKnown RBP10.59□□□□□ -0.71
NUP88-205ENST00000572809 CDK12Q9NYV4 1490 aaPredicted RBP10.59□□□□□ -0.71
NUP88-205ENST00000572809 ACEP12821 1306 aa10.58□□□□□ -0.71
NUP88-205ENST00000572809 BCL9LQ86UU0 1499 aa10.58□□□□□ -0.72
NUP88-205ENST00000572809 TONSLQ96HA7 1378 aa10.58□□□□□ -0.72
NUP88-205ENST00000572809 GJD4Q96KN9 370 aaPredicted RBP10.58□□□□□ -0.72
NUP88-205ENST00000572809 ATP7BP35670 1465 aa10.57□□□□□ -0.72
NUP88-205ENST00000572809 FAM83GA6ND36 823 aa10.57□□□□□ -0.72
NUP88-205ENST00000572809 UPF1Q92900 1129 aaKnown RBP eCLIP10.57□□□□□ -0.72
NUP88-205ENST00000572809 EVC2Q86UK5 1308 aa10.57□□□□□ -0.72
NUP88-205ENST00000572809 MARF1Q9Y4F3 1742 aaKnown RBP10.56□□□□□ -0.72
NUP88-205ENST00000572809 POLR3AO14802 1390 aaPredicted RBP10.56□□□□□ -0.72
NUP88-205ENST00000572809 TRPM1Q7Z4N2 1603 aa10.56□□□□□ -0.72
NUP88-205ENST00000572809 PSDA5PKW4 1024 aaPredicted RBP10.56□□□□□ -0.72
NUP88-205ENST00000572809 TPRNQ4KMQ1 711 aa10.56□□□□□ -0.72
NUP88-205ENST00000572809 CARD11Q9BXL7 1154 aa10.56□□□□□ -0.72
NUP88-205ENST00000572809 CABP1Q9NZU7 370 aa10.56□□□□□ -0.72
NUP88-205ENST00000572809 ATRNO75882 1429 aa10.56□□□□□ -0.72
NUP88-205ENST00000572809 SLIT2O94813 1529 aa10.55□□□□□ -0.72
NUP88-205ENST00000572809 PSEN2P49810 448 aa10.55□□□□□ -0.72
NUP88-205ENST00000572809 DMRTA1Q5VZB9 504 aa10.55□□□□□ -0.72
NUP88-205ENST00000572809 ABTB2Q8N961 1025 aa10.55□□□□□ -0.72
NUP88-205ENST00000572809 TK2O00142 265 aa10.54□□□□□ -0.72
NUP88-205ENST00000572809 RGS12O14924 1447 aa10.54□□□□□ -0.72
NUP88-205ENST00000572809 ITSN1Q15811 1721 aa10.54□□□□□ -0.72
NUP88-205ENST00000572809 VPS72Q15906 364 aa10.54□□□□□ -0.72
NUP88-205ENST00000572809 NUTM2GQ5VZR2 741 aa10.54□□□□□ -0.72
NUP88-205ENST00000572809 PPIP5K1Q6PFW1 1433 aa10.54□□□□□ -0.72
NUP88-205ENST00000572809 KCTD12Q96CX2 325 aaKnown RBP10.54□□□□□ -0.72
NUP88-205ENST00000572809 TRPM3Q9HCF6 1732 aaPredicted RBP10.54□□□□□ -0.72
NUP88-205ENST00000572809 HRO43593 1189 aa10.53□□□□□ -0.72
NUP88-205ENST00000572809 BTG4Q9NY30 223 aa10.53□□□□□ -0.72
NUP88-205ENST00000572809 CCDC9Q9Y3X0 531 aaKnown RBP10.53□□□□□ -0.72
NUP88-205ENST00000572809 ALS2Q96Q42 1657 aa10.53□□□□□ -0.72
NUP88-205ENST00000572809 ZC3H6P61129 1189 aaKnown RBP10.52□□□□□ -0.73
NUP88-205ENST00000572809 NLRP13Q86W25 1043 aa10.52□□□□□ -0.73
NUP88-205ENST00000572809 PCGF6Q9BYE7 350 aa10.52□□□□□ -0.73
NUP88-205ENST00000572809 QRICH2Q9H0J4 1663 aa10.52□□□□□ -0.73
NUP88-205ENST00000572809 PRDM11Q9NQV5 511 aa10.51□□□□□ -0.73
NUP88-205ENST00000572809 WDR70Q9NW82 654 aa10.51□□□□□ -0.73
NUP88-205ENST00000572809 BRD4O60885 1362 aaPredicted RBP10.51□□□□□ -0.73
NUP88-205ENST00000572809 TOPAZ1Q8N9V7 1692 aa10.5□□□□□ -0.73
NUP88-205ENST00000572809 ONECUT3O60422 494 aaPredicted RBP10.5□□□□□ -0.73
NUP88-205ENST00000572809 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.5□□□□□ -0.73
NUP88-205ENST00000572809 RALGAPBQ86X10 1494 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 PPP1R37O75864 691 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 GCP02774 474 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 CHRNA2Q15822 529 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 SEPT12Q8IYM1 358 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 ABCA3Q99758 1704 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 ATAD2Q6PL18 1390 aa10.49□□□□□ -0.73
NUP88-205ENST00000572809 EVA1CP58658 441 aa10.48□□□□□ -0.73
NUP88-205ENST00000572809 PTCD2Q8WV60 388 aaKnown RBP10.48□□□□□ -0.73
NUP88-205ENST00000572809 TIMELESSQ9UNS1 1208 aa10.48□□□□□ -0.73
NUP88-205ENST00000572809 KIAA0232Q92628 1395 aa10.48□□□□□ -0.73
NUP88-205ENST00000572809 GLI3P10071 1580 aa10.48□□□□□ -0.73
NUP88-205ENST00000572809 NWD2Q9ULI1 1742 aa10.47□□□□□ -0.73
NUP88-205ENST00000572809 ST20-MTHFSA0A0A6YYL1 179 aa10.47□□□□□ -0.73
NUP88-205ENST00000572809 FAM98CQ17RN3 349 aaKnown RBP10.47□□□□□ -0.73
NUP88-205ENST00000572809 SBNO2Q9Y2G9 1366 aa10.47□□□□□ -0.73
NUP88-205ENST00000572809 USP6P35125 1406 aa10.47□□□□□ -0.73
NUP88-205ENST00000572809 PLCH1Q4KWH8 1693 aa10.47□□□□□ -0.73
NUP88-205ENST00000572809 COL14A1Q05707 1796 aaKnown RBP10.47□□□□□ -0.73
NUP88-205ENST00000572809 A0A0G2JS52 829 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 MYT1Q01538 1121 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 PPP4R3BQ5MIZ7 849 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 CCDC125Q86Z20 511 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 TMC1Q8TDI8 760 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 PUS7Q96PZ0 661 aaKnown RBP10.46□□□□□ -0.73
NUP88-205ENST00000572809 STRN4Q9NRL3 753 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 USP19O94966 1318 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 SPATA31A5Q5VU36 1347 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 TTC21BQ7Z4L5 1316 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 SPATA31A7Q8IWB4 1347 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 CLSPNQ9HAW4 1339 aa10.46□□□□□ -0.73
NUP88-205ENST00000572809 CRYBG1Q9Y4K1 1723 aa10.46□□□□□ -0.74
NUP88-205ENST00000572809 SSH2Q76I76 1423 aa10.45□□□□□ -0.74
NUP88-205ENST00000572809 KTN1Q86UP2 1357 aaKnown RBP10.45□□□□□ -0.74
NUP88-205ENST00000572809 KRT27Q7Z3Y8 459 aa10.45□□□□□ -0.74
NUP88-205ENST00000572809 SLC12A5Q9H2X9 1139 aa10.45□□□□□ -0.74
NUP88-205ENST00000572809 CPSF1Q10570 1443 aaKnown RBP10.44□□□□□ -0.74
NUP88-205ENST00000572809 CPDO75976 1380 aa10.44□□□□□ -0.74
NUP88-205ENST00000572809 TTC21AQ8NDW8 1320 aa10.44□□□□□ -0.74
NUP88-205ENST00000572809 ZBTB7CA1YPR0 619 aa10.44□□□□□ -0.74
NUP88-205ENST00000572809 HDGFL2Q7Z4V5 671 aaPredicted RBP10.44□□□□□ -0.74
NUP88-205ENST00000572809 TESK2Q96S53 571 aa10.44□□□□□ -0.74
NUP88-205ENST00000572809 PHRF1Q9P1Y6 1649 aaKnown RBP10.44□□□□□ -0.74
NUP88-205ENST00000572809 SPATA31A1Q5TZJ5 1347 aa10.43□□□□□ -0.74
NUP88-205ENST00000572809 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.43□□□□□ -0.74
NUP88-205ENST00000572809 PLPP6Q8IY26 295 aa10.43□□□□□ -0.74
NUP88-205ENST00000572809 KCNH5Q8NCM2 988 aa10.43□□□□□ -0.74
NUP88-205ENST00000572809 CCER1Q8TC90 406 aaPredicted RBP10.43□□□□□ -0.74
NUP88-205ENST00000572809 TERF2IPQ9NYB0 399 aa10.43□□□□□ -0.74
NUP88-205ENST00000572809 USP35Q9P2H5 1018 aa10.43□□□□□ -0.74
NUP88-205ENST00000572809 NRAPQ86VF7 1730 aa10.42□□□□□ -0.74
NUP88-205ENST00000572809 PTPN5P54829 565 aa10.42□□□□□ -0.74
NUP88-205ENST00000572809 LARP1Q6PKG0 1096 aaKnown RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms