RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RRS1Q15050 365 aaKnown RBP9.47□□□□□ -0.89
VPS53-213ENST00000572334 COG3Q96JB2 828 aa9.47□□□□□ -0.89
VPS53-213ENST00000572334 STK32BQ9NY57 414 aa9.47□□□□□ -0.89
VPS53-213ENST00000572334 ATF5Q9Y2D1 282 aaPredicted RBP9.47□□□□□ -0.89
VPS53-213ENST00000572334 TOGARAM1Q9Y4F4 1720 aa9.47□□□□□ -0.89
VPS53-213ENST00000572334 NBPF6Q5VWK0 638 aa9.46□□□□□ -0.9
VPS53-213ENST00000572334 AKT1S1Q96B36 256 aa9.46□□□□□ -0.9
VPS53-213ENST00000572334 NBPF4Q96M43 638 aa9.46□□□□□ -0.9
VPS53-213ENST00000572334 CARD14Q9BXL6 1004 aa9.46□□□□□ -0.9
VPS53-213ENST00000572334 GGNBP2Q9H3C7 697 aa9.46□□□□□ -0.9
VPS53-213ENST00000572334 PPP1R1BQ9UD71 204 aaPredicted RBP9.46□□□□□ -0.9
VPS53-213ENST00000572334 RTL1A6NKG5 1358 aa9.46□□□□□ -0.9
VPS53-213ENST00000572334 GOLGB1Q14789 3259 aaKnown RBP9.46□□□□□ -0.9
VPS53-213ENST00000572334 PKD1L3Q7Z443 1732 aa9.45□□□□□ -0.9
VPS53-213ENST00000572334 DDX54Q8TDD1 881 aaKnown RBP9.45□□□□□ -0.9
VPS53-213ENST00000572334 SLC24A1O60721 1099 aa9.44□□□□□ -0.9
VPS53-213ENST00000572334 AMPHP49418 695 aa9.44□□□□□ -0.9
VPS53-213ENST00000572334 KCNQ4P56696 695 aa9.44□□□□□ -0.9
VPS53-213ENST00000572334 TMF1P82094 1093 aa9.44□□□□□ -0.9
VPS53-213ENST00000572334 SYT17Q9BSW7 474 aa9.44□□□□□ -0.9
VPS53-213ENST00000572334 MTFR1LQ9H019 292 aa9.44□□□□□ -0.9
VPS53-213ENST00000572334 C5P01031 1676 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 NCAPD2Q15021 1401 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 INSRP06213 1382 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 PNPLA7Q6ZV29 1317 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 YY1P25490 414 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 PRIM1P49642 420 aaKnown RBP9.43□□□□□ -0.9
VPS53-213ENST00000572334 HSP90AB2PQ58FF8 381 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 USHBP1Q8N6Y0 703 aa9.43□□□□□ -0.9
VPS53-213ENST00000572334 ZCRB1Q8TBF4 217 aaKnown RBP9.43□□□□□ -0.9
VPS53-213ENST00000572334 FHDC1Q9C0D6 1143 aaPredicted RBP9.43□□□□□ -0.9
VPS53-213ENST00000572334 SLC27A3Q5K4L6 730 aa9.42□□□□□ -0.9
VPS53-213ENST00000572334 NSD3Q9BZ95 1437 aa9.41□□□□□ -0.9
VPS53-213ENST00000572334 FLT4P35916 1363 aa9.41□□□□□ -0.9
VPS53-213ENST00000572334 KIF24Q5T7B8 1368 aa9.41□□□□□ -0.9
VPS53-213ENST00000572334 MAP3K5Q99683 1374 aa9.41□□□□□ -0.9
VPS53-213ENST00000572334 UBR3Q6ZT12 1888 aa9.41□□□□□ -0.9
VPS53-213ENST00000572334 EMILIN1Q9Y6C2 1016 aa9.41□□□□□ -0.9
VPS53-213ENST00000572334 CGNL1Q0VF96 1302 aa9.4□□□□□ -0.9
VPS53-213ENST00000572334 ARXQ96QS3 562 aa9.4□□□□□ -0.9
VPS53-213ENST00000572334 CYP27B1O15528 508 aa9.39□□□□□ -0.91
VPS53-213ENST00000572334 SYTL4Q96C24 671 aaPredicted RBP9.39□□□□□ -0.91
VPS53-213ENST00000572334 SMG6Q86US8 1419 aaKnown RBP9.39□□□□□ -0.91
VPS53-213ENST00000572334 MAPK8IP2Q13387 824 aaPredicted RBP9.38□□□□□ -0.91
VPS53-213ENST00000572334 SLC16A10Q8TF71 515 aa9.38□□□□□ -0.91
VPS53-213ENST00000572334 TIMELESSQ9UNS1 1208 aa9.38□□□□□ -0.91
VPS53-213ENST00000572334 C4BP0C0L5 1744 aa9.38□□□□□ -0.91
VPS53-213ENST00000572334 TATP17735 454 aaPredicted RBP9.37□□□□□ -0.91
VPS53-213ENST00000572334 CDCA8Q53HL2 280 aa9.37□□□□□ -0.91
VPS53-213ENST00000572334 AMIGO3Q86WK7 504 aa9.37□□□□□ -0.91
VPS53-213ENST00000572334 COL23A1Q86Y22 540 aaPredicted RBP9.37□□□□□ -0.91
VPS53-213ENST00000572334 RAPGEF4Q8WZA2 1011 aa9.37□□□□□ -0.91
VPS53-213ENST00000572334 CCNL1Q9UK58 526 aaPredicted RBP9.37□□□□□ -0.91
VPS53-213ENST00000572334 WASHC2AQ641Q2 1341 aa9.36□□□□□ -0.91
VPS53-213ENST00000572334 PCDH11XQ9BZA7 1347 aa9.36□□□□□ -0.91
VPS53-213ENST00000572334 PCDH11YQ9BZA8 1340 aa9.36□□□□□ -0.91
VPS53-213ENST00000572334 CLSPNQ9HAW4 1339 aa9.36□□□□□ -0.91
VPS53-213ENST00000572334 TFCP2L1Q9NZI6 479 aa9.36□□□□□ -0.91
VPS53-213ENST00000572334 POLKQ9UBT6 870 aa9.36□□□□□ -0.91
VPS53-213ENST00000572334 NKX1-1Q15270 411 aaPredicted RBP9.35□□□□□ -0.91
VPS53-213ENST00000572334 ZNF784Q8NCA9 323 aaPredicted RBP9.35□□□□□ -0.91
VPS53-213ENST00000572334 NLGN2Q8NFZ4 835 aa9.35□□□□□ -0.91
VPS53-213ENST00000572334 EYA1Q99502 592 aa9.35□□□□□ -0.91
VPS53-213ENST00000572334 PALLDQ8WX93 1383 aa9.35□□□□□ -0.91
VPS53-213ENST00000572334 MYH14Q7Z406 1995 aaKnown RBP9.34□□□□□ -0.91
VPS53-213ENST00000572334 VIRMAQ69YN4 1812 aaKnown RBP9.34□□□□□ -0.91
VPS53-213ENST00000572334 DCAF8L1A6NGE4 600 aa9.34□□□□□ -0.91
VPS53-213ENST00000572334 MPRIPQ6WCQ1 1025 aa9.34□□□□□ -0.91
VPS53-213ENST00000572334 PIGBQ92521 554 aa9.34□□□□□ -0.91
VPS53-213ENST00000572334 EIF4A2Q14240 407 aaKnown RBP9.33□□□□□ -0.92
VPS53-213ENST00000572334 SMIM5Q71RC9 77 aa9.33□□□□□ -0.92
VPS53-213ENST00000572334 COL5A3P25940 1745 aaPredicted RBP9.33□□□□□ -0.92
VPS53-213ENST00000572334 ZNF831Q5JPB2 1677 aa9.32□□□□□ -0.92
VPS53-213ENST00000572334 KIAA1551Q9HCM1 1747 aa9.32□□□□□ -0.92
VPS53-213ENST00000572334 PPM1GO15355 546 aaPredicted RBP9.32□□□□□ -0.92
VPS53-213ENST00000572334 HSPA5P11021 654 aaKnown RBP9.32□□□□□ -0.92
VPS53-213ENST00000572334 POLD1P28340 1107 aa9.32□□□□□ -0.92
VPS53-213ENST00000572334 PCGF6Q9BYE7 350 aa9.32□□□□□ -0.92
VPS53-213ENST00000572334 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS53-213ENST00000572334 KIF13BQ9NQT8 1826 aa9.31□□□□□ -0.92
VPS53-213ENST00000572334 PHKG2P15735 406 aa9.31□□□□□ -0.92
VPS53-213ENST00000572334 YBX3P16989 372 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS53-213ENST00000572334 MSL1Q68DK7 614 aa9.31□□□□□ -0.92
VPS53-213ENST00000572334 LINC00116Q8NCU8 138 aa9.31□□□□□ -0.92
VPS53-213ENST00000572334 IGSF1Q8N6C5 1336 aa9.31□□□□□ -0.92
VPS53-213ENST00000572334 SCN11AQ9UI33 1791 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 KDRP35968 1356 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 TNNT2P45379 298 aaPredicted RBP9.3□□□□□ -0.92
VPS53-213ENST00000572334 ITPK1Q13572 414 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 GPR162Q16538 588 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 KLHL34Q8N239 644 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 PANK3Q9H999 370 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 ASAP1Q9ULH1 1129 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 SPG7Q9UQ90 795 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 C4AP0C0L4 1744 aa9.3□□□□□ -0.92
VPS53-213ENST00000572334 PLEKHG2Q9H7P9 1386 aa9.29□□□□□ -0.92
VPS53-213ENST00000572334 LOC102724428A0A0B4J2F2 783 aa9.29□□□□□ -0.92
VPS53-213ENST00000572334 SIK1P57059 783 aa9.29□□□□□ -0.92
VPS53-213ENST00000572334 SMARCC1Q92922 1105 aaPredicted RBP9.29□□□□□ -0.92
VPS53-213ENST00000572334 SLC4A9Q96Q91 983 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms