RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 DOT1LQ8TEK3 1739 aa13.47□□□□□ -0.25
CIITA-207ENST00000571545 HMGB2P26583 209 aaKnown RBP13.46□□□□□ -0.25
CIITA-207ENST00000571545 RRS1Q15050 365 aaKnown RBP13.46□□□□□ -0.25
CIITA-207ENST00000571545 PPP1R1BQ9UD71 204 aaPredicted RBP13.46□□□□□ -0.25
CIITA-207ENST00000571545 SHANK3Q9BYB0 1731 aa13.45□□□□□ -0.26
CIITA-207ENST00000571545 KCNQ2O43526 872 aa13.45□□□□□ -0.26
CIITA-207ENST00000571545 ACSBG1Q96GR2 724 aa13.45□□□□□ -0.26
CIITA-207ENST00000571545 MEGF6O75095 1541 aa13.44□□□□□ -0.26
CIITA-207ENST00000571545 PAPPAQ13219 1627 aa13.44□□□□□ -0.26
CIITA-207ENST00000571545 SLC27A3Q5K4L6 730 aa13.44□□□□□ -0.26
CIITA-207ENST00000571545 PTF1AQ7RTS3 328 aa13.44□□□□□ -0.26
CIITA-207ENST00000571545 ZCRB1Q8TBF4 217 aaKnown RBP13.44□□□□□ -0.26
CIITA-207ENST00000571545 DDX54Q8TDD1 881 aaKnown RBP13.44□□□□□ -0.26
CIITA-207ENST00000571545 ANO8Q9HCE9 1232 aaPredicted RBP13.44□□□□□ -0.26
CIITA-207ENST00000571545 NSD2O96028 1365 aa13.44□□□□□ -0.26
CIITA-207ENST00000571545 PCDH11XQ9BZA7 1347 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 PCDH11YQ9BZA8 1340 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 TATP17735 454 aaPredicted RBP13.43□□□□□ -0.26
CIITA-207ENST00000571545 SLC15A2Q16348 729 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 QSER1Q2KHR3 1735 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 PROM2Q8N271 834 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 CARD14Q9BXL6 1004 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 MAP2P11137 1827 aaKnown RBP13.43□□□□□ -0.26
CIITA-207ENST00000571545 PLEKHG2Q9H7P9 1386 aa13.43□□□□□ -0.26
CIITA-207ENST00000571545 PKD1L3Q7Z443 1732 aa13.42□□□□□ -0.26
CIITA-207ENST00000571545 FBLN1P23142 703 aa13.41□□□□□ -0.26
CIITA-207ENST00000571545 NBPF6Q5VWK0 638 aa13.41□□□□□ -0.26
CIITA-207ENST00000571545 NBPF4Q96M43 638 aa13.41□□□□□ -0.26
CIITA-207ENST00000571545 POLR3GLQ9BT43 218 aa13.41□□□□□ -0.26
CIITA-207ENST00000571545 LY75O60449 1722 aa13.41□□□□□ -0.26
CIITA-207ENST00000571545 NCAPD2Q15021 1401 aa13.4□□□□□ -0.26
CIITA-207ENST00000571545 HSPA5P11021 654 aaKnown RBP13.4□□□□□ -0.26
CIITA-207ENST00000571545 HSP90AB2PQ58FF8 381 aa13.4□□□□□ -0.26
CIITA-207ENST00000571545 SYTL4Q96C24 671 aaPredicted RBP13.4□□□□□ -0.26
CIITA-207ENST00000571545 WASHC2AQ641Q2 1341 aa13.39□□□□□ -0.27
CIITA-207ENST00000571545 MTFR1LQ9H019 292 aa13.39□□□□□ -0.27
CIITA-207ENST00000571545 PPM1GO15355 546 aaPredicted RBP13.38□□□□□ -0.27
CIITA-207ENST00000571545 EMILIN1Q9Y6C2 1016 aa13.38□□□□□ -0.27
CIITA-207ENST00000571545 PRIM1P49642 420 aaKnown RBP13.37□□□□□ -0.27
CIITA-207ENST00000571545 USHBP1Q8N6Y0 703 aa13.37□□□□□ -0.27
CIITA-207ENST00000571545 SPG7Q9UQ90 795 aa13.37□□□□□ -0.27
CIITA-207ENST00000571545 SLC16A10Q8TF71 515 aa13.36□□□□□ -0.27
CIITA-207ENST00000571545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.36□□□□□ -0.27
CIITA-207ENST00000571545 ZBTB7AO95365 584 aa13.35□□□□□ -0.27
CIITA-207ENST00000571545 PANK3Q9H999 370 aa13.34□□□□□ -0.27
CIITA-207ENST00000571545 POLKQ9UBT6 870 aa13.34□□□□□ -0.27
CIITA-207ENST00000571545 CCNL1Q9UK58 526 aaPredicted RBP13.34□□□□□ -0.27
CIITA-207ENST00000571545 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
CIITA-207ENST00000571545 C5P01031 1676 aa13.34□□□□□ -0.27
CIITA-207ENST00000571545 SMARCC1Q92922 1105 aaPredicted RBP13.33□□□□□ -0.28
CIITA-207ENST00000571545 AKT1S1Q96B36 256 aa13.33□□□□□ -0.28
CIITA-207ENST00000571545 LRRC4BQ9NT99 713 aa13.33□□□□□ -0.28
CIITA-207ENST00000571545 ITGB4P16144 1822 aa13.33□□□□□ -0.28
CIITA-207ENST00000571545 TUBGCP6Q96RT7 1819 aa13.32□□□□□ -0.28
CIITA-207ENST00000571545 PTGER2P43116 358 aa13.32□□□□□ -0.28
CIITA-207ENST00000571545 ZNF827Q17R98 1081 aa13.32□□□□□ -0.28
CIITA-207ENST00000571545 TFCP2L1Q9NZI6 479 aa13.32□□□□□ -0.28
CIITA-207ENST00000571545 TOGARAM1Q9Y4F4 1720 aa13.32□□□□□ -0.28
CIITA-207ENST00000571545 MAP3K5Q99683 1374 aa13.32□□□□□ -0.28
CIITA-207ENST00000571545 COL24A1Q17RW2 1714 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 CYP27B1O15528 508 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 POLD1P28340 1107 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 NKX1-1Q15270 411 aaPredicted RBP13.31□□□□□ -0.28
CIITA-207ENST00000571545 MORC1Q86VD1 984 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 EYA1Q99502 592 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 PDGFDQ9GZP0 370 aaPredicted RBP13.31□□□□□ -0.28
CIITA-207ENST00000571545 ATF5Q9Y2D1 282 aaPredicted RBP13.31□□□□□ -0.28
CIITA-207ENST00000571545 TAF1LQ8IZX4 1826 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 PALLDQ8WX93 1383 aa13.31□□□□□ -0.28
CIITA-207ENST00000571545 TNNT2P45379 298 aaPredicted RBP13.3□□□□□ -0.28
CIITA-207ENST00000571545 EIF4A2Q14240 407 aaKnown RBP13.3□□□□□ -0.28
CIITA-207ENST00000571545 IFNL2Q8IZJ0 200 aa13.3□□□□□ -0.28
CIITA-207ENST00000571545 FLAD1Q8NFF5 587 aa13.3□□□□□ -0.28
CIITA-207ENST00000571545 RNF39Q9H2S5 420 aa13.3□□□□□ -0.28
CIITA-207ENST00000571545 IGSF1Q8N6C5 1336 aa13.3□□□□□ -0.28
CIITA-207ENST00000571545 HSP90AB1P08238 724 aaKnown RBP13.29□□□□□ -0.28
CIITA-207ENST00000571545 ARXQ96QS3 562 aa13.29□□□□□ -0.28
CIITA-207ENST00000571545 SGIP1Q9BQI5 828 aa13.29□□□□□ -0.28
CIITA-207ENST00000571545 PNPLA7Q6ZV29 1317 aa13.29□□□□□ -0.28
CIITA-207ENST00000571545 MPRIPQ6WCQ1 1025 aa13.28□□□□□ -0.28
CIITA-207ENST00000571545 TMOD3Q9NYL9 352 aa13.28□□□□□ -0.28
CIITA-207ENST00000571545 AMOTQ4VCS5 1084 aa13.27□□□□□ -0.29
CIITA-207ENST00000571545 FHDC1Q9C0D6 1143 aaPredicted RBP13.27□□□□□ -0.29
CIITA-207ENST00000571545 KIF7Q2M1P5 1343 aa13.27□□□□□ -0.29
CIITA-207ENST00000571545 C4BP0C0L5 1744 aa13.27□□□□□ -0.29
CIITA-207ENST00000571545 PHKG2P15735 406 aa13.26□□□□□ -0.29
CIITA-207ENST00000571545 PLEKHO1Q53GL0 409 aaPredicted RBP13.26□□□□□ -0.29
CIITA-207ENST00000571545 SYT17Q9BSW7 474 aa13.26□□□□□ -0.29
CIITA-207ENST00000571545 ZNF831Q5JPB2 1677 aa13.25□□□□□ -0.29
CIITA-207ENST00000571545 YY1P25490 414 aa13.25□□□□□ -0.29
CIITA-207ENST00000571545 AK7Q96M32 723 aa13.25□□□□□ -0.29
CIITA-207ENST00000571545 KCNQ4P56696 695 aa13.24□□□□□ -0.29
CIITA-207ENST00000571545 CACNB1Q02641 598 aaPredicted RBP13.24□□□□□ -0.29
CIITA-207ENST00000571545 PIGBQ92521 554 aa13.24□□□□□ -0.29
CIITA-207ENST00000571545 DCAF5Q96JK2 942 aa13.24□□□□□ -0.29
CIITA-207ENST00000571545 CHD4Q14839 1912 aa13.23□□□□□ -0.29
CIITA-207ENST00000571545 KDRP35968 1356 aa13.23□□□□□ -0.29
CIITA-207ENST00000571545 ERVV-2B6SEH9 535 aa13.23□□□□□ -0.29
CIITA-207ENST00000571545 AMER1Q5JTC6 1135 aaPredicted RBP13.23□□□□□ -0.29
CIITA-207ENST00000571545 C1orf141Q5JVX7 400 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms