RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZBTB7CA1YPR0 619 aa27.98■■■□□ 2.07
VPS53-210ENST00000571456 TOM1L2Q6ZVM7 507 aa27.98■■■□□ 2.07
VPS53-210ENST00000571456 SOX12O15370 315 aa27.97■■■□□ 2.07
VPS53-210ENST00000571456 DDX10Q13206 875 aaKnown RBP27.97■■■□□ 2.07
VPS53-210ENST00000571456 MAP2P11137 1827 aaKnown RBP27.97■■■□□ 2.07
VPS53-210ENST00000571456 CDCA7Q9BWT1 371 aaPredicted RBP27.96■■■□□ 2.07
VPS53-210ENST00000571456 IP6K1Q92551 441 aa27.93■■■□□ 2.06
VPS53-210ENST00000571456 MAP3K19Q56UN5 1328 aa27.92■■■□□ 2.06
VPS53-210ENST00000571456 FLT4P35916 1363 aa27.91■■■□□ 2.06
VPS53-210ENST00000571456 AMPHP49418 695 aa27.91■■■□□ 2.06
VPS53-210ENST00000571456 SHANK3Q9BYB0 1731 aa27.91■■■□□ 2.06
VPS53-210ENST00000571456 WDR17Q8IZU2 1322 aa27.91■■■□□ 2.06
VPS53-210ENST00000571456 CC2D1BQ5T0F9 858 aaKnown RBP27.9■■■□□ 2.06
VPS53-210ENST00000571456 FAM208AQ9UK61 1670 aaKnown RBP27.89■■■□□ 2.06
VPS53-210ENST00000571456 SMG6Q86US8 1419 aaKnown RBP27.89■■■□□ 2.06
VPS53-210ENST00000571456 RGPD5Q99666 1765 aa27.88■■■□□ 2.05
VPS53-210ENST00000571456 HOXC9P31274 260 aa27.87■■■□□ 2.05
VPS53-210ENST00000571456 PAPPAQ13219 1627 aa27.87■■■□□ 2.05
VPS53-210ENST00000571456 RRS1Q15050 365 aaKnown RBP27.86■■■□□ 2.05
VPS53-210ENST00000571456 POLKQ9UBT6 870 aa27.86■■■□□ 2.05
VPS53-210ENST00000571456 INSRP06213 1382 aa27.86■■■□□ 2.05
VPS53-210ENST00000571456 KAT6BQ8WYB5 2073 aa27.85■■■□□ 2.05
VPS53-210ENST00000571456 NHSQ6T4R5 1651 aa27.85■■■□□ 2.05
VPS53-210ENST00000571456 EXOC5O00471 708 aa27.85■■■□□ 2.05
VPS53-210ENST00000571456 PELP1Q8IZL8 1130 aaKnown RBP27.85■■■□□ 2.05
VPS53-210ENST00000571456 AXIN2Q9Y2T1 843 aa27.85■■■□□ 2.05
VPS53-210ENST00000571456 ERBB3P21860 1342 aa27.84■■■□□ 2.05
VPS53-210ENST00000571456 KLHL34Q8N239 644 aa27.83■■■□□ 2.05
VPS53-210ENST00000571456 TNNT2P45379 298 aaPredicted RBP27.82■■■□□ 2.04
VPS53-210ENST00000571456 RALBP1Q15311 655 aa27.82■■■□□ 2.04
VPS53-210ENST00000571456 CARD10Q9BWT7 1032 aa27.82■■■□□ 2.04
VPS53-210ENST00000571456 FBLN1P23142 703 aa27.81■■■□□ 2.04
VPS53-210ENST00000571456 EMILIN1Q9Y6C2 1016 aa27.81■■■□□ 2.04
VPS53-210ENST00000571456 CSB-PGBD3P0DP91 1061 aa27.79■■■□□ 2.04
VPS53-210ENST00000571456 ZNF827Q17R98 1081 aa27.79■■■□□ 2.04
VPS53-210ENST00000571456 ANKRD24Q8TF21 1146 aa27.79■■■□□ 2.04
VPS53-210ENST00000571456 COL24A1Q17RW2 1714 aa27.78■■■□□ 2.04
VPS53-210ENST00000571456 BTAF1O14981 1849 aa27.77■■■□□ 2.04
VPS53-210ENST00000571456 PPM1GO15355 546 aaPredicted RBP27.77■■■□□ 2.04
VPS53-210ENST00000571456 POLD1P28340 1107 aa27.77■■■□□ 2.04
VPS53-210ENST00000571456 SLC16A10Q8TF71 515 aa27.77■■■□□ 2.04
VPS53-210ENST00000571456 TNS2Q63HR2 1409 aa27.76■■■□□ 2.04
VPS53-210ENST00000571456 QSER1Q2KHR3 1735 aa27.76■■■□□ 2.03
VPS53-210ENST00000571456 HSP90AB2PQ58FF8 381 aa27.75■■■□□ 2.03
VPS53-210ENST00000571456 ACSBG1Q96GR2 724 aa27.75■■■□□ 2.03
VPS53-210ENST00000571456 GRIN3BO60391 1043 aa27.73■■■□□ 2.03
VPS53-210ENST00000571456 MTHFSP49914 203 aa27.73■■■□□ 2.03
VPS53-210ENST00000571456 NLGN2Q8NFZ4 835 aa27.73■■■□□ 2.03
VPS53-210ENST00000571456 PPP2R1AP30153 589 aa27.71■■■□□ 2.03
VPS53-210ENST00000571456 CFAP53Q96M91 514 aa27.71■■■□□ 2.03
VPS53-210ENST00000571456 LRRC4BQ9NT99 713 aa27.71■■■□□ 2.03
VPS53-210ENST00000571456 ATP10DQ9P241 1426 aa27.7■■■□□ 2.03
VPS53-210ENST00000571456 CNGB1Q14028 1251 aaPredicted RBP27.7■■■□□ 2.02
VPS53-210ENST00000571456 NLRP2Q9NX02 1062 aa27.7■■■□□ 2.02
VPS53-210ENST00000571456 YBX3P16989 372 aaKnown RBP eCLIP27.69■■■□□ 2.02
VPS53-210ENST00000571456 HSPA6P17066 643 aa27.69■■■□□ 2.02
VPS53-210ENST00000571456 AKT1S1Q96B36 256 aa27.69■■■□□ 2.02
VPS53-210ENST00000571456 LTV1Q96GA3 475 aaPredicted RBP27.68■■■□□ 2.02
VPS53-210ENST00000571456 PRKRIP1Q9H875 184 aaPredicted RBP27.67■■■□□ 2.02
VPS53-210ENST00000571456 MYBBP1AQ9BQG0 1328 aaKnown RBP27.67■■■□□ 2.02
VPS53-210ENST00000571456 PLEKHG2Q9H7P9 1386 aa27.66■■■□□ 2.02
VPS53-210ENST00000571456 TUBGCP6Q96RT7 1819 aa27.65■■■□□ 2.02
VPS53-210ENST00000571456 GPBP1L1Q9HC44 474 aaPredicted RBP27.65■■■□□ 2.02
VPS53-210ENST00000571456 PNPLA7Q6ZV29 1317 aa27.65■■■□□ 2.02
VPS53-210ENST00000571456 RGPD2P0DJD1 1756 aa27.64■■■□□ 2.02
VPS53-210ENST00000571456 EIF4A2Q14240 407 aaKnown RBP27.64■■■□□ 2.02
VPS53-210ENST00000571456 NCAPD2Q15021 1401 aa27.64■■■□□ 2.02
VPS53-210ENST00000571456 SLC27A3Q5K4L6 730 aa27.63■■■□□ 2.01
VPS53-210ENST00000571456 ANP32CO43423 234 aa27.62■■■□□ 2.01
VPS53-210ENST00000571456 DIAPH1O60610 1272 aaKnown RBP27.62■■■□□ 2.01
VPS53-210ENST00000571456 NBPF6Q5VWK0 638 aa27.61■■■□□ 2.01
VPS53-210ENST00000571456 NBPF4Q96M43 638 aa27.61■■■□□ 2.01
VPS53-210ENST00000571456 TFCP2L1Q9NZI6 479 aa27.61■■■□□ 2.01
VPS53-210ENST00000571456 COL3A1P02461 1466 aaPredicted RBP27.6■■■□□ 2.01
VPS53-210ENST00000571456 IL2RBP14784 551 aa27.6■■■□□ 2.01
VPS53-210ENST00000571456 IL13P35225 146 aa27.6■■■□□ 2.01
VPS53-210ENST00000571456 IGSF1Q8N6C5 1336 aa27.6■■■□□ 2.01
VPS53-210ENST00000571456 EYA1Q99502 592 aa27.59■■■□□ 2.01
VPS53-210ENST00000571456 NUDCQ9Y266 331 aa27.59■■■□□ 2.01
VPS53-210ENST00000571456 RAPGEF4Q8WZA2 1011 aa27.56■■■□□ 2
VPS53-210ENST00000571456 ADCY9O60503 1353 aa27.53■■■□□ 2
VPS53-210ENST00000571456 KDRP35968 1356 aa27.53■■■□□ 2
VPS53-210ENST00000571456 ZNF526Q8TF50 670 aaPredicted RBP27.53■■■□□ 2
VPS53-210ENST00000571456 TATP17735 454 aaPredicted RBP27.52■■■□□ 2
VPS53-210ENST00000571456 KCNQ4P56696 695 aa27.5■■□□□ 1.99
VPS53-210ENST00000571456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.5■■□□□ 1.992e-10■■□□□ 12.8
VPS53-210ENST00000571456 LY75O60449 1722 aa27.48■■□□□ 1.99
VPS53-210ENST00000571456 USHBP1Q8N6Y0 703 aa27.48■■□□□ 1.99
VPS53-210ENST00000571456 MEGF6O75095 1541 aa27.47■■□□□ 1.99
VPS53-210ENST00000571456 PKD1L3Q7Z443 1732 aa27.47■■□□□ 1.99
VPS53-210ENST00000571456 MSH5O43196 834 aa27.46■■□□□ 1.99
VPS53-210ENST00000571456 SULT6B1Q6IMI4 303 aa27.46■■□□□ 1.99
VPS53-210ENST00000571456 U2SURPO15042 1029 aaKnown RBP27.45■■□□□ 1.98
VPS53-210ENST00000571456 ZCRB1Q8TBF4 217 aaKnown RBP27.45■■□□□ 1.98
VPS53-210ENST00000571456 AMOTQ4VCS5 1084 aa27.44■■□□□ 1.98
VPS53-210ENST00000571456 SPG7Q9UQ90 795 aa27.44■■□□□ 1.98
VPS53-210ENST00000571456 CD2APQ9Y5K6 639 aa27.44■■□□□ 1.98
VPS53-210ENST00000571456 COL23A1Q86Y22 540 aaPredicted RBP27.43■■□□□ 1.98
VPS53-210ENST00000571456 DDX54Q8TDD1 881 aaKnown RBP27.43■■□□□ 1.98
VPS53-210ENST00000571456 PNNQ9H307 717 aaKnown RBP27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms