RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 NUDT16Q96DE0 195 aaKnown RBP10.51□□□□□ -0.73
CHD3-213ENST00000571249 PIK3C2GO75747 1445 aa10.5□□□□□ -0.73
CHD3-213ENST00000571249 WNK3Q9BYP7 1800 aa10.5□□□□□ -0.73
CHD3-213ENST00000571249 CSB-PGBD3P0DP91 1061 aa10.5□□□□□ -0.73
CHD3-213ENST00000571249 HSPA8P11142 646 aaKnown RBP10.5□□□□□ -0.73
CHD3-213ENST00000571249 WBP1LQ9NX94 342 aa10.5□□□□□ -0.73
CHD3-213ENST00000571249 ACEP12821 1306 aa10.5□□□□□ -0.73
CHD3-213ENST00000571249 C10orf71Q711Q0 1435 aa10.5□□□□□ -0.73
CHD3-213ENST00000571249 A0A0G2JLW4 131 aa10.49□□□□□ -0.73
CHD3-213ENST00000571249 NLRP13Q86W25 1043 aa10.49□□□□□ -0.73
CHD3-213ENST00000571249 ERBB3P21860 1342 aa10.49□□□□□ -0.73
CHD3-213ENST00000571249 PXDNLA1KZ92 1463 aa10.49□□□□□ -0.73
CHD3-213ENST00000571249 ITGAEP38570 1179 aa10.48□□□□□ -0.73
CHD3-213ENST00000571249 AMIGO3Q86WK7 504 aa10.48□□□□□ -0.73
CHD3-213ENST00000571249 CCNL1Q9UK58 526 aaPredicted RBP10.48□□□□□ -0.73
CHD3-213ENST00000571249 VEGFBP49765 207 aa10.47□□□□□ -0.73
CHD3-213ENST00000571249 SYTL4Q96C24 671 aaPredicted RBP10.47□□□□□ -0.73
CHD3-213ENST00000571249 CREBZFQ9NS37 354 aa10.47□□□□□ -0.73
CHD3-213ENST00000571249 RNF181Q9P0P0 153 aa10.47□□□□□ -0.73
CHD3-213ENST00000571249 TRAK1Q9UPV9 953 aa10.47□□□□□ -0.73
CHD3-213ENST00000571249 CUL9Q8IWT3 2517 aa10.46□□□□□ -0.73
CHD3-213ENST00000571249 MYCNP04198 464 aaPredicted RBP10.46□□□□□ -0.73
CHD3-213ENST00000571249 PRIM1P49642 420 aaKnown RBP10.46□□□□□ -0.73
CHD3-213ENST00000571249 PLEKHG2Q9H7P9 1386 aa10.46□□□□□ -0.74
CHD3-213ENST00000571249 TRPM1Q7Z4N2 1603 aa10.46□□□□□ -0.74
CHD3-213ENST00000571249 COL18A1P39060 1754 aa10.45□□□□□ -0.74
CHD3-213ENST00000571249 PPIP5K1Q6PFW1 1433 aa10.45□□□□□ -0.74
CHD3-213ENST00000571249 CNTNAP1P78357 1384 aa10.45□□□□□ -0.74
CHD3-213ENST00000571249 EIF3AQ14152 1382 aaKnown RBP10.45□□□□□ -0.74
CHD3-213ENST00000571249 FCHSD2O94868 740 aa10.45□□□□□ -0.74
CHD3-213ENST00000571249 POLR3AO14802 1390 aaPredicted RBP10.44□□□□□ -0.74
CHD3-213ENST00000571249 VEGFAP15692 232 aaPredicted RBP10.44□□□□□ -0.74
CHD3-213ENST00000571249 SLC4A2P04920 1241 aa10.43□□□□□ -0.74
CHD3-213ENST00000571249 DPEP1P16444 411 aa10.43□□□□□ -0.74
CHD3-213ENST00000571249 NLRP6P59044 892 aa10.43□□□□□ -0.74
CHD3-213ENST00000571249 MAPK8IP2Q13387 824 aaPredicted RBP10.43□□□□□ -0.74
CHD3-213ENST00000571249 PRPF38BQ5VTL8 546 aaKnown RBP10.43□□□□□ -0.74
CHD3-213ENST00000571249 DDX54Q8TDD1 881 aaKnown RBP10.43□□□□□ -0.74
CHD3-213ENST00000571249 POTECB2RU33 542 aa10.42□□□□□ -0.74
CHD3-213ENST00000571249 ABCC6O95255 1503 aa10.42□□□□□ -0.74
CHD3-213ENST00000571249 N4BP2Q86UW6 1770 aaPredicted RBP10.42□□□□□ -0.74
CHD3-213ENST00000571249 SPATA31E1Q6ZUB1 1445 aa10.41□□□□□ -0.74
CHD3-213ENST00000571249 CCDC7Q96M83 1385 aa10.41□□□□□ -0.74
CHD3-213ENST00000571249 SOX12O15370 315 aa10.41□□□□□ -0.74
CHD3-213ENST00000571249 PHF14O94880 888 aa10.41□□□□□ -0.74
CHD3-213ENST00000571249 ARHGEF25Q86VW2 580 aa10.41□□□□□ -0.74
CHD3-213ENST00000571249 TNRC6CQ9HCJ0 1690 aaKnown RBP10.41□□□□□ -0.74
CHD3-213ENST00000571249 NSD2O96028 1365 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 A0A0C4DFX4 3053 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 RGPD5Q99666 1765 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 PLEKHG3A1L390 1219 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 IL2RBP14784 551 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 TGFB2P61812 414 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 FLAD1Q8NFF5 587 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 CDK19Q9BWU1 502 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 MCOLN1Q9GZU1 580 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 PKD1L3Q7Z443 1732 aa10.4□□□□□ -0.74
CHD3-213ENST00000571249 PIK3C2AO00443 1686 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 LOC105371045A0A1W2PR82 267 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 DLL1O00548 723 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 POTEIP0CG38 1075 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 POTEJP0CG39 1038 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 KCNA3P22001 575 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 NLRP2Q9NX02 1062 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 TSKSQ9UJT2 592 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 CCDC61Q9Y6R9 512 aa10.39□□□□□ -0.75
CHD3-213ENST00000571249 LY75O60449 1722 aa10.38□□□□□ -0.75
CHD3-213ENST00000571249 KIAA1551Q9HCM1 1747 aa10.38□□□□□ -0.75
CHD3-213ENST00000571249 GLTPD2A6NH11 291 aa10.38□□□□□ -0.75
CHD3-213ENST00000571249 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.37□□□□□ -0.75
CHD3-213ENST00000571249 MMP10P09238 476 aa10.37□□□□□ -0.75
CHD3-213ENST00000571249 PRKCSHP14314 528 aaPredicted RBP10.37□□□□□ -0.75
CHD3-213ENST00000571249 CPSF1Q10570 1443 aaKnown RBP10.37□□□□□ -0.75
CHD3-213ENST00000571249 QRICH2Q9H0J4 1663 aa10.37□□□□□ -0.75
CHD3-213ENST00000571249 SOX10P56693 466 aa10.36□□□□□ -0.75
CHD3-213ENST00000571249 DCAF5Q96JK2 942 aa10.36□□□□□ -0.75
CHD3-213ENST00000571249 USP54Q70EL1 1684 aa10.36□□□□□ -0.75
CHD3-213ENST00000571249 SLIT3O75094 1523 aa10.36□□□□□ -0.75
CHD3-213ENST00000571249 ANKRD36BQ8N2N9 1353 aa10.36□□□□□ -0.75
CHD3-213ENST00000571249 RASSF7Q02833 373 aa10.35□□□□□ -0.75
CHD3-213ENST00000571249 CHADLQ6NUI6 762 aa10.35□□□□□ -0.75
CHD3-213ENST00000571249 SZT2Q5T011 3432 aa10.35□□□□□ -0.75
CHD3-213ENST00000571249 VIRMAQ69YN4 1812 aaKnown RBP10.35□□□□□ -0.75
CHD3-213ENST00000571249 ITSN1Q15811 1721 aa10.34□□□□□ -0.75
CHD3-213ENST00000571249 MAP2K1Q02750 393 aaPredicted RBP10.34□□□□□ -0.75
CHD3-213ENST00000571249 PASKQ96RG2 1323 aa10.33□□□□□ -0.76
CHD3-213ENST00000571249 HABP4Q5JVS0 413 aaKnown RBP10.33□□□□□ -0.76
CHD3-213ENST00000571249 AK7Q96M32 723 aa10.33□□□□□ -0.76
CHD3-213ENST00000571249 TAOK2Q9UL54 1235 aa10.33□□□□□ -0.76
CHD3-213ENST00000571249 USP47Q96K76 1375 aa10.33□□□□□ -0.76
CHD3-213ENST00000571249 SBF1O95248 1867 aa10.33□□□□□ -0.76
CHD3-213ENST00000571249 ADGRB1O14514 1584 aa10.32□□□□□ -0.76
CHD3-213ENST00000571249 DALRD3Q5D0E6 543 aaKnown RBP10.32□□□□□ -0.76
CHD3-213ENST00000571249 PIM2Q9P1W9 311 aa10.32□□□□□ -0.76
CHD3-213ENST00000571249 TOGARAM1Q9Y4F4 1720 aa10.32□□□□□ -0.76
CHD3-213ENST00000571249 WDR33Q9C0J8 1336 aaKnown RBP10.32□□□□□ -0.76
CHD3-213ENST00000571249 C5P01031 1676 aa10.31□□□□□ -0.76
CHD3-213ENST00000571249 KIF13BQ9NQT8 1826 aa10.31□□□□□ -0.76
CHD3-213ENST00000571249 TMEM88BA6NKF7 163 aa10.31□□□□□ -0.76
CHD3-213ENST00000571249 DGKZQ13574 1117 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms