RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 GPBP1L1Q9HC44 474 aaPredicted RBP18.47■□□□□ 0.55
CCDC40-205ENST00000571028 SLC24A1O60721 1099 aa18.46■□□□□ 0.55
CCDC40-205ENST00000571028 YBX3P16989 372 aaKnown RBP eCLIP18.46■□□□□ 0.55
CCDC40-205ENST00000571028 ATP10DQ9P241 1426 aa18.46■□□□□ 0.55
CCDC40-205ENST00000571028 KCNQ4P56696 695 aa18.44■□□□□ 0.54
CCDC40-205ENST00000571028 CDCA8Q53HL2 280 aa18.42■□□□□ 0.54
CCDC40-205ENST00000571028 NME9Q86XW9 330 aa18.42■□□□□ 0.54
CCDC40-205ENST00000571028 SLC12A5Q9H2X9 1139 aa18.42■□□□□ 0.54
CCDC40-205ENST00000571028 CCNL1Q9UK58 526 aaPredicted RBP18.42■□□□□ 0.54
CCDC40-205ENST00000571028 QSER1Q2KHR3 1735 aa18.42■□□□□ 0.54
CCDC40-205ENST00000571028 USP31Q70CQ4 1352 aa18.42■□□□□ 0.54
CCDC40-205ENST00000571028 HSPA6P17066 643 aa18.41■□□□□ 0.54
CCDC40-205ENST00000571028 PRIM1P49642 420 aaKnown RBP18.41■□□□□ 0.54
CCDC40-205ENST00000571028 ZNF526Q8TF50 670 aaPredicted RBP18.41■□□□□ 0.54
CCDC40-205ENST00000571028 ANKRD36BQ8N2N9 1353 aa18.41■□□□□ 0.54
CCDC40-205ENST00000571028 MSL1Q68DK7 614 aa18.4■□□□□ 0.54
CCDC40-205ENST00000571028 LTV1Q96GA3 475 aaPredicted RBP18.4■□□□□ 0.54
CCDC40-205ENST00000571028 HDGFL2Q7Z4V5 671 aaPredicted RBP18.39■□□□□ 0.53
CCDC40-205ENST00000571028 COL23A1Q86Y22 540 aaPredicted RBP18.37■□□□□ 0.53
CCDC40-205ENST00000571028 PUS7Q96PZ0 661 aaKnown RBP18.37■□□□□ 0.53
CCDC40-205ENST00000571028 CD2APQ9Y5K6 639 aa18.37■□□□□ 0.53
CCDC40-205ENST00000571028 COL24A1Q17RW2 1714 aa18.37■□□□□ 0.53
CCDC40-205ENST00000571028 LTN1O94822 1766 aa18.36■□□□□ 0.53
CCDC40-205ENST00000571028 KAT6BQ8WYB5 2073 aa18.36■□□□□ 0.53
CCDC40-205ENST00000571028 MON2Q7Z3U7 1717 aa18.35■□□□□ 0.53
CCDC40-205ENST00000571028 HMGB2P26583 209 aaKnown RBP18.35■□□□□ 0.53
CCDC40-205ENST00000571028 ZCRB1Q8TBF4 217 aaKnown RBP18.34■□□□□ 0.53
CCDC40-205ENST00000571028 IP6K1Q92551 441 aa18.34■□□□□ 0.53
CCDC40-205ENST00000571028 TERF2IPQ9NYB0 399 aa18.34■□□□□ 0.53
CCDC40-205ENST00000571028 TUBGCP6Q96RT7 1819 aa18.33■□□□□ 0.53
CCDC40-205ENST00000571028 FLAD1Q8NFF5 587 aa18.33■□□□□ 0.52
CCDC40-205ENST00000571028 EDC4Q6P2E9 1401 aaKnown RBP18.32■□□□□ 0.52
CCDC40-205ENST00000571028 NSD2O96028 1365 aa18.32■□□□□ 0.52
CCDC40-205ENST00000571028 USP54Q70EL1 1684 aa18.32■□□□□ 0.52
CCDC40-205ENST00000571028 KIF7Q2M1P5 1343 aa18.32■□□□□ 0.52
CCDC40-205ENST00000571028 DOT1LQ8TEK3 1739 aa18.32■□□□□ 0.52
CCDC40-205ENST00000571028 ADCY9O60503 1353 aa18.31■□□□□ 0.52
CCDC40-205ENST00000571028 AMPHP49418 695 aa18.3■□□□□ 0.52
CCDC40-205ENST00000571028 FAM208AQ9UK61 1670 aaKnown RBP18.3■□□□□ 0.52
CCDC40-205ENST00000571028 A0A1W2PP64 1363 aa18.3■□□□□ 0.52
CCDC40-205ENST00000571028 LY75O60449 1722 aa18.29■□□□□ 0.52
CCDC40-205ENST00000571028 CD163L1Q9NR16 1453 aa18.28■□□□□ 0.52
CCDC40-205ENST00000571028 WWC3Q9ULE0 1092 aa18.28■□□□□ 0.52
CCDC40-205ENST00000571028 IGSF1Q8N6C5 1336 aa18.27■□□□□ 0.52
CCDC40-205ENST00000571028 COG3Q96JB2 828 aa18.27■□□□□ 0.52
CCDC40-205ENST00000571028 AK7Q96M32 723 aa18.27■□□□□ 0.52
CCDC40-205ENST00000571028 WASHC2AQ641Q2 1341 aa18.26■□□□□ 0.51
CCDC40-205ENST00000571028 APLP1P51693 650 aa18.26■□□□□ 0.51
CCDC40-205ENST00000571028 RAPGEF4Q8WZA2 1011 aa18.26■□□□□ 0.51
CCDC40-205ENST00000571028 PANK3Q9H999 370 aa18.26■□□□□ 0.51
CCDC40-205ENST00000571028 MEGF6O75095 1541 aa18.25■□□□□ 0.51
CCDC40-205ENST00000571028 HOXC9P31274 260 aa18.25■□□□□ 0.51
CCDC40-205ENST00000571028 CGNL1Q0VF96 1302 aa18.24■□□□□ 0.51
CCDC40-205ENST00000571028 MAP3K19Q56UN5 1328 aa18.24■□□□□ 0.51
CCDC40-205ENST00000571028 PALLDQ8WX93 1383 aa18.24■□□□□ 0.51
CCDC40-205ENST00000571028 PHF14O94880 888 aa18.23■□□□□ 0.51
CCDC40-205ENST00000571028 CARD14Q9BXL6 1004 aa18.23■□□□□ 0.51
CCDC40-205ENST00000571028 SMG6Q86US8 1419 aaKnown RBP18.23■□□□□ 0.51
CCDC40-205ENST00000571028 NSD3Q9BZ95 1437 aa18.23■□□□□ 0.51
CCDC40-205ENST00000571028 KIF3CO14782 793 aa18.22■□□□□ 0.51
CCDC40-205ENST00000571028 MPRIPQ6WCQ1 1025 aa18.22■□□□□ 0.51
CCDC40-205ENST00000571028 C5P01031 1676 aa18.22■□□□□ 0.51
CCDC40-205ENST00000571028 TATP17735 454 aaPredicted RBP18.21■□□□□ 0.51
CCDC40-205ENST00000571028 CNGB1Q14028 1251 aaPredicted RBP18.21■□□□□ 0.51
CCDC40-205ENST00000571028 PCDH11XQ9BZA7 1347 aa18.21■□□□□ 0.51
CCDC40-205ENST00000571028 PCDH11YQ9BZA8 1340 aa18.21■□□□□ 0.51
CCDC40-205ENST00000571028 USHBP1Q8N6Y0 703 aa18.2■□□□□ 0.5
CCDC40-205ENST00000571028 SMARCC1Q92922 1105 aaPredicted RBP18.2■□□□□ 0.5
CCDC40-205ENST00000571028 RTL1A6NKG5 1358 aa18.19■□□□□ 0.5
CCDC40-205ENST00000571028 GGNBP2Q9H3C7 697 aa18.19■□□□□ 0.5
CCDC40-205ENST00000571028 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.18■□□□□ 0.5
CCDC40-205ENST00000571028 TOMM70O94826 608 aa18.18■□□□□ 0.5
CCDC40-205ENST00000571028 NBPF6Q5VWK0 638 aa18.18■□□□□ 0.5
CCDC40-205ENST00000571028 NBPF4Q96M43 638 aa18.18■□□□□ 0.5
CCDC40-205ENST00000571028 FBLN1P23142 703 aa18.17■□□□□ 0.5
CCDC40-205ENST00000571028 FYB1O15117 783 aa18.16■□□□□ 0.5
CCDC40-205ENST00000571028 SSFA2P28290 1259 aa18.16■□□□□ 0.5
CCDC40-205ENST00000571028 KNSTRNQ9Y448 316 aa18.16■□□□□ 0.5
CCDC40-205ENST00000571028 RRS1Q15050 365 aaKnown RBP18.15■□□□□ 0.5
CCDC40-205ENST00000571028 C4BP0C0L5 1744 aa18.15■□□□□ 0.5
CCDC40-205ENST00000571028 ZNF316A6NFI3 1004 aaPredicted RBP18.14■□□□□ 0.49
CCDC40-205ENST00000571028 C16orf71Q8IYS4 520 aaPredicted RBP18.14■□□□□ 0.49
CCDC40-205ENST00000571028 DDX10Q13206 875 aaKnown RBP18.13■□□□□ 0.49
CCDC40-205ENST00000571028 BCS1LQ9Y276 419 aa18.13■□□□□ 0.49
CCDC40-205ENST00000571028 SMIM5Q71RC9 77 aa18.12■□□□□ 0.49
CCDC40-205ENST00000571028 AMIGO3Q86WK7 504 aa18.12■□□□□ 0.49
CCDC40-205ENST00000571028 DNAJC5GQ8N7S2 189 aa18.12■□□□□ 0.49
CCDC40-205ENST00000571028 GNPATO15228 680 aa18.11■□□□□ 0.49
CCDC40-205ENST00000571028 TNNT2P45379 298 aaPredicted RBP18.11■□□□□ 0.49
CCDC40-205ENST00000571028 RGPD2P0DJD1 1756 aa18.11■□□□□ 0.49
CCDC40-205ENST00000571028 CICQ96RK0 1608 aaPredicted RBP18.1■□□□□ 0.49
CCDC40-205ENST00000571028 CAPN15O75808 1086 aa18.1■□□□□ 0.49
CCDC40-205ENST00000571028 MMP10P09238 476 aa18.1■□□□□ 0.49
CCDC40-205ENST00000571028 CC2D1BQ5T0F9 858 aaKnown RBP18.1■□□□□ 0.49
CCDC40-205ENST00000571028 ARHGAP27Q6ZUM4 889 aa18.1■□□□□ 0.49
CCDC40-205ENST00000571028 LOC102724428A0A0B4J2F2 783 aa18.09■□□□□ 0.49
CCDC40-205ENST00000571028 CYP27B1O15528 508 aa18.09■□□□□ 0.49
CCDC40-205ENST00000571028 SIK1P57059 783 aa18.09■□□□□ 0.49
CCDC40-205ENST00000571028 LINC00116Q8NCU8 138 aa18.09■□□□□ 0.49
CCDC40-205ENST00000571028 PIGBQ92521 554 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms