RNA–Protein interactions for RNA: ENST00000570902.1

SCARF1-204, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 1,060 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-204ENST00000570902 DOT1LQ8TEK3 1739 aa26.73■■□□□ 1.87
SCARF1-204ENST00000570902 KLHL34Q8N239 644 aa26.73■■□□□ 1.87
SCARF1-204ENST00000570902 TESK2Q96S53 571 aa26.73■■□□□ 1.87
SCARF1-204ENST00000570902 COL24A1Q17RW2 1714 aa26.73■■□□□ 1.87
SCARF1-204ENST00000570902 RTL1A6NKG5 1358 aa26.71■■□□□ 1.87
SCARF1-204ENST00000570902 LY75O60449 1722 aa26.71■■□□□ 1.87
SCARF1-204ENST00000570902 NSD2O96028 1365 aa26.71■■□□□ 1.87
SCARF1-204ENST00000570902 ST20-MTHFSA0A0A6YYL1 179 aa26.7■■□□□ 1.86
SCARF1-204ENST00000570902 CGNL1Q0VF96 1302 aa26.69■■□□□ 1.86
SCARF1-204ENST00000570902 KCNQ4P56696 695 aa26.69■■□□□ 1.86
SCARF1-204ENST00000570902 MEGF6O75095 1541 aa26.69■■□□□ 1.86
SCARF1-204ENST00000570902 SHANK3Q9BYB0 1731 aa26.68■■□□□ 1.86
SCARF1-204ENST00000570902 TUBGCP6Q96RT7 1819 aa26.68■■□□□ 1.86
SCARF1-204ENST00000570902 CCNL1Q9UK58 526 aaPredicted RBP26.68■■□□□ 1.86
SCARF1-204ENST00000570902 FBLN1P23142 703 aa26.67■■□□□ 1.86
SCARF1-204ENST00000570902 C1QTNF8P60827 252 aa26.67■■□□□ 1.86
SCARF1-204ENST00000570902 USP47Q96K76 1375 aa26.67■■□□□ 1.86
SCARF1-204ENST00000570902 SMG6Q86US8 1419 aaKnown RBP26.66■■□□□ 1.86
SCARF1-204ENST00000570902 RGPD2P0DJD1 1756 aa26.66■■□□□ 1.86
SCARF1-204ENST00000570902 PELP1Q8IZL8 1130 aaKnown RBP26.65■■□□□ 1.86
SCARF1-204ENST00000570902 SENP3-EIF4A1A0A087X0R7 540 aa26.64■■□□□ 1.86
SCARF1-204ENST00000570902 HMGB2P26583 209 aaKnown RBP26.64■■□□□ 1.86
SCARF1-204ENST00000570902 RAPGEF4Q8WZA2 1011 aa26.64■■□□□ 1.86
SCARF1-204ENST00000570902 RRS1Q15050 365 aaKnown RBP26.63■■□□□ 1.85
SCARF1-204ENST00000570902 NBPF6Q5VWK0 638 aa26.63■■□□□ 1.85
SCARF1-204ENST00000570902 NBPF4Q96M43 638 aa26.63■■□□□ 1.85
SCARF1-204ENST00000570902 MSH5O43196 834 aa26.62■■□□□ 1.85
SCARF1-204ENST00000570902 NLGN2Q8NFZ4 835 aa26.61■■□□□ 1.85
SCARF1-204ENST00000570902 FYB1O15117 783 aa26.6■■□□□ 1.85
SCARF1-204ENST00000570902 TATP17735 454 aaPredicted RBP26.6■■□□□ 1.85
SCARF1-204ENST00000570902 GOLGB1Q14789 3259 aaKnown RBP26.6■■□□□ 1.85
SCARF1-204ENST00000570902 TMF1P82094 1093 aa26.59■■□□□ 1.85
SCARF1-204ENST00000570902 COL23A1Q86Y22 540 aaPredicted RBP26.59■■□□□ 1.85
SCARF1-204ENST00000570902 USHBP1Q8N6Y0 703 aa26.59■■□□□ 1.85
SCARF1-204ENST00000570902 GGNBP2Q9H3C7 697 aa26.59■■□□□ 1.85
SCARF1-204ENST00000570902 GRIN3BO60391 1043 aa26.58■■□□□ 1.85
SCARF1-204ENST00000570902 GIGYF1O75420 1035 aaPredicted RBP26.58■■□□□ 1.85
SCARF1-204ENST00000570902 PCDH11XQ9BZA7 1347 aa26.58■■□□□ 1.85
SCARF1-204ENST00000570902 PCDH11YQ9BZA8 1340 aa26.58■■□□□ 1.85
SCARF1-204ENST00000570902 INSRP06213 1382 aa26.57■■□□□ 1.84
SCARF1-204ENST00000570902 KIF24Q5T7B8 1368 aa26.56■■□□□ 1.84
SCARF1-204ENST00000570902 FLAD1Q8NFF5 587 aa26.55■■□□□ 1.84
SCARF1-204ENST00000570902 FLT4P35916 1363 aa26.55■■□□□ 1.84
SCARF1-204ENST00000570902 C5P01031 1676 aa26.54■■□□□ 1.84
SCARF1-204ENST00000570902 HSP90AB2PQ58FF8 381 aa26.53■■□□□ 1.84
SCARF1-204ENST00000570902 CDCA8Q53HL2 280 aa26.52■■□□□ 1.84
SCARF1-204ENST00000570902 PALLDQ8WX93 1383 aa26.52■■□□□ 1.84
SCARF1-204ENST00000570902 YBX3P16989 372 aaKnown RBP eCLIP26.51■■□□□ 1.83
SCARF1-204ENST00000570902 MSL1Q68DK7 614 aa26.51■■□□□ 1.83
SCARF1-204ENST00000570902 KIF20BQ96Q89 1820 aa26.51■■□□□ 1.83
SCARF1-204ENST00000570902 MPRIPQ6WCQ1 1025 aa26.5■■□□□ 1.83
SCARF1-204ENST00000570902 CD2APQ9Y5K6 639 aa26.5■■□□□ 1.83
SCARF1-204ENST00000570902 SMARCC1Q92922 1105 aaPredicted RBP26.49■■□□□ 1.83
SCARF1-204ENST00000570902 CYP27B1O15528 508 aa26.46■■□□□ 1.83
SCARF1-204ENST00000570902 TAF1LQ8IZX4 1826 aa26.46■■□□□ 1.83
SCARF1-204ENST00000570902 AK7Q96M32 723 aa26.45■■□□□ 1.82
SCARF1-204ENST00000570902 NSD3Q9BZ95 1437 aa26.44■■□□□ 1.82
SCARF1-204ENST00000570902 C4BP0C0L5 1744 aa26.43■■□□□ 1.82
SCARF1-204ENST00000570902 PKD1L3Q7Z443 1732 aa26.42■■□□□ 1.82
SCARF1-204ENST00000570902 TOGARAM1Q9Y4F4 1720 aa26.42■■□□□ 1.82
SCARF1-204ENST00000570902 SPG7Q9UQ90 795 aa26.41■■□□□ 1.82
SCARF1-204ENST00000570902 EMILIN1Q9Y6C2 1016 aa26.41■■□□□ 1.82
SCARF1-204ENST00000570902 ITGB4P16144 1822 aa26.41■■□□□ 1.82
SCARF1-204ENST00000570902 NCAPD2Q15021 1401 aa26.4■■□□□ 1.82
SCARF1-204ENST00000570902 NKX1-1Q15270 411 aaPredicted RBP26.4■■□□□ 1.82
SCARF1-204ENST00000570902 PIGBQ92521 554 aa26.39■■□□□ 1.82
SCARF1-204ENST00000570902 CARD14Q9BXL6 1004 aa26.39■■□□□ 1.82
SCARF1-204ENST00000570902 ATP10DQ9P241 1426 aa26.39■■□□□ 1.81
SCARF1-204ENST00000570902 PPM1GO15355 546 aaPredicted RBP26.37■■□□□ 1.81
SCARF1-204ENST00000570902 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.36■■□□□ 1.81
SCARF1-204ENST00000570902 PHF14O94880 888 aa26.36■■□□□ 1.81
SCARF1-204ENST00000570902 SSFA2P28290 1259 aa26.36■■□□□ 1.81
SCARF1-204ENST00000570902 LOC102724428A0A0B4J2F2 783 aa26.35■■□□□ 1.81
SCARF1-204ENST00000570902 SIK1P57059 783 aa26.35■■□□□ 1.81
SCARF1-204ENST00000570902 UBR3Q6ZT12 1888 aa26.35■■□□□ 1.81
SCARF1-204ENST00000570902 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.35■■□□□ 1.81
SCARF1-204ENST00000570902 WASHC2AQ641Q2 1341 aa26.35■■□□□ 1.81
SCARF1-204ENST00000570902 ANKRD26Q9UPS8 1709 aa26.34■■□□□ 1.81
SCARF1-204ENST00000570902 AMIGO3Q86WK7 504 aa26.34■■□□□ 1.81
SCARF1-204ENST00000570902 GPBP1L1Q9HC44 474 aaPredicted RBP26.34■■□□□ 1.81
SCARF1-204ENST00000570902 TMOD3Q9NYL9 352 aa26.34■■□□□ 1.81
SCARF1-204ENST00000570902 IGSF1Q8N6C5 1336 aa26.32■■□□□ 1.8
SCARF1-204ENST00000570902 MAP2P11137 1827 aaKnown RBP26.31■■□□□ 1.8
SCARF1-204ENST00000570902 LINC00116Q8NCU8 138 aa26.31■■□□□ 1.8
SCARF1-204ENST00000570902 EYA1Q99502 592 aa26.31■■□□□ 1.8
SCARF1-204ENST00000570902 ADCY9O60503 1353 aa26.31■■□□□ 1.8
SCARF1-204ENST00000570902 IFNL2Q8IZJ0 200 aa26.3■■□□□ 1.8
SCARF1-204ENST00000570902 GNPATO15228 680 aa26.27■■□□□ 1.8
SCARF1-204ENST00000570902 PHKG2P15735 406 aa26.27■■□□□ 1.8
SCARF1-204ENST00000570902 ATP6V1AP38606 617 aa26.27■■□□□ 1.8
SCARF1-204ENST00000570902 SMIM5Q71RC9 77 aa26.27■■□□□ 1.8
SCARF1-204ENST00000570902 ASAP1Q9ULH1 1129 aa26.27■■□□□ 1.8
SCARF1-204ENST00000570902 CEP350Q5VT06 3117 aa26.27■■□□□ 1.8
SCARF1-204ENST00000570902 PLEKHG2Q9H7P9 1386 aa26.26■■□□□ 1.79
SCARF1-204ENST00000570902 ITPK1Q13572 414 aa26.25■■□□□ 1.79
SCARF1-204ENST00000570902 POLKQ9UBT6 870 aa26.25■■□□□ 1.79
SCARF1-204ENST00000570902 ZNF526Q8TF50 670 aaPredicted RBP26.24■■□□□ 1.79
SCARF1-204ENST00000570902 ATG3Q9NT62 314 aa26.23■■□□□ 1.79
SCARF1-204ENST00000570902 WWC3Q9ULE0 1092 aa26.22■■□□□ 1.79
SCARF1-204ENST00000570902 TIMELESSQ9UNS1 1208 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms