RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	LONRF3	Q496Y0	759 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	NUTM2D	Q5VT03	806 aa	Predicted RBP	4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	FAM9B	Q8IZU0	186 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	NME8	Q8N427	588 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	CARD11	Q9BXL7	1154 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	METTL14	Q9HCE5	456 aa	Known RBP	4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	GOPC	Q9HD26	462 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	SLC52A1	Q9NWF4	448 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	KIAA1522	Q9P206	1035 aa	Predicted RBP	4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	ADGRF5	Q8IZF2	1346 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	WASHC2C	Q9Y4E1	1318 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	NRXN1	Q9ULB1	1477 aa		4.62	□□□□□ -1.67
SMG6-208	ENST00000570874	SETBP1	Q9Y6X0	1596 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	ST20-MTHFS	A0A0A6YYL1	179 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	RAB11FIP3	O75154	756 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	LSM11	P83369	360 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	FBXO31	Q5XUX0	539 aa	Predicted RBP	4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	SMC5	Q8IY18	1101 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	GPRASP1	Q5JY77	1395 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	DISP3	Q9P2K9	1392 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	ARHGAP31	Q2M1Z3	1444 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	ADGRB1	O14514	1584 aa		4.61	□□□□□ -1.67
SMG6-208	ENST00000570874	KNDC1	Q76NI1	1749 aa		4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	KIF20B	Q96Q89	1820 aa		4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	EIF3J	O75822	258 aa	Known RBP	4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	CALR	P27797	417 aa	Known RBP	4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	ZC3H6	P61129	1189 aa	Known RBP	4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	FAM193A	P78312	1265 aa		4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	CCDC184	Q52MB2	194 aa		4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	ADAMTSL3	P82987	1691 aa		4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	ANKRD26	Q9UPS8	1709 aa		4.6	□□□□□ -1.67
SMG6-208	ENST00000570874	CLGN	O14967	610 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	RIMBP2	O15034	1052 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	PIK3C2G	O75747	1445 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	MAP2	P11137	1827 aa	Known RBP	4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	ARID4A	P29374	1257 aa	Predicted RBP	4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	DEK	P35659	375 aa	Known RBP	4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	CNGB1	Q14028	1251 aa	Predicted RBP	4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	ITSN1	Q15811	1721 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	CFAP70	Q5T0N1	1121 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	WDR78	Q5VTH9	848 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874		Q6ZNB5	142 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	CADPS2	Q86UW7	1296 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	GPIHBP1	Q8IV16	184 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	PPP1R1B	Q9UD71	204 aa	Predicted RBP	4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	KCNG1	Q9UIX4	513 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	ALK	Q9UM73	1620 aa		4.59	□□□□□ -1.67
SMG6-208	ENST00000570874	AKAP12	Q02952	1782 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	PTPRM	P28827	1452 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	SCAF11	Q99590	1463 aa	Known RBP	4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	ANP32C	O43423	234 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	LIG1	P18858	919 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	IDI1	Q13907	227 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	E2F4	Q16254	413 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	GIMAP6	Q6P9H5	292 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	KRBA2	Q6ZNG9	492 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	TSHZ1	Q6ZSZ6	1077 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	POM121	Q96HA1	1249 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	TESK2	Q96S53	571 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	MTA3	Q9BTC8	594 aa		4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	SETD1B	Q9UPS6	1966 aa	Known RBP	4.58	□□□□□ -1.68
SMG6-208	ENST00000570874	ZNF142	P52746	1687 aa	Predicted RBP	4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	TULP4	Q9NRJ4	1543 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	A2ML1	A8K2U0	1454 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	CREB3	O43889	395 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	PPFIA4	O75335	1185 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	PEX14	O75381	377 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	CSB-PGBD3	P0DP91	1061 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	FOSB	P53539	338 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	MYBPC2	Q14324	1141 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	TMEM132E	Q6IEE7	984 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	RINL	Q6ZS11	566 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	ZNF662	Q6ZS27	426 aa		4.57	□□□□□ -1.68
SMG6-208	ENST00000570874	ZNF622	Q969S3	477 aa	Known RBP eCLIP	4.57	□□□□□ -1.68	4e-6	■■■■□ 24.2
SMG6-208	ENST00000570874	ZMYM3	Q14202	1370 aa		4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	CHD2	O14647	1828 aa	Known RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	VGF	O15240	615 aa	Predicted RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	SH3BP5	O60239	455 aa		4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	CEBPA	P49715	358 aa	Predicted RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	HSP90AB2P	Q58FF8	381 aa		4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	ZFYVE27	Q5T4F4	411 aa		4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	TXNDC2	Q86VQ3	553 aa		4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	TMA7	Q9Y2S6	64 aa	Known RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	SHPRH	Q149N8	1683 aa		4.56	□□□□□ -1.68
SMG6-208	ENST00000570874	MON2	Q7Z3U7	1717 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	DLG5	Q8TDM6	1919 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	CCDC194	A0A1B0GVG4	234 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	MAP4K4	O95819	1239 aa	Predicted RBP	4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	IGBP1	P78318	339 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	NAALADL2	Q58DX5	795 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	CASC1	Q6TDU7	716 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	NOP9	Q86U38	636 aa	Known RBP	4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	RBM46	Q8TBY0	533 aa	Known RBP	4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	PBXIP1	Q96AQ6	731 aa		4.55	□□□□□ -1.68
SMG6-208	ENST00000570874	CDCA7	Q9BWT1	371 aa	Predicted RBP	4.55	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms