RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 KLHL34Q8N239 644 aa12.03□□□□□ -0.48
CTDNEP1-203ENST00000570385 SGIP1Q9BQI5 828 aa12.03□□□□□ -0.48
CTDNEP1-203ENST00000570385 AKT1S1Q96B36 256 aa12.02□□□□□ -0.49
CTDNEP1-203ENST00000570385 ARXQ96QS3 562 aa12.02□□□□□ -0.49
CTDNEP1-203ENST00000570385 PAPPAQ13219 1627 aa12.01□□□□□ -0.49
CTDNEP1-203ENST00000570385 RAPGEF4Q8WZA2 1011 aa12.01□□□□□ -0.49
CTDNEP1-203ENST00000570385 CARD14Q9BXL6 1004 aa12.01□□□□□ -0.49
CTDNEP1-203ENST00000570385 TFCP2L1Q9NZI6 479 aa12.01□□□□□ -0.49
CTDNEP1-203ENST00000570385 FAM208AQ9UK61 1670 aaKnown RBP12□□□□□ -0.49
CTDNEP1-203ENST00000570385 PPM1GO15355 546 aaPredicted RBP12□□□□□ -0.49
CTDNEP1-203ENST00000570385 SLC27A3Q5K4L6 730 aa12□□□□□ -0.49
CTDNEP1-203ENST00000570385 POLR3GLQ9BT43 218 aa12□□□□□ -0.49
CTDNEP1-203ENST00000570385 PCGF6Q9BYE7 350 aa12□□□□□ -0.49
CTDNEP1-203ENST00000570385 PNPLA7Q6ZV29 1317 aa12□□□□□ -0.49
CTDNEP1-203ENST00000570385 TATP17735 454 aaPredicted RBP11.99□□□□□ -0.49
CTDNEP1-203ENST00000570385 CCNL1Q9UK58 526 aaPredicted RBP11.99□□□□□ -0.49
CTDNEP1-203ENST00000570385 EMILIN1Q9Y6C2 1016 aa11.99□□□□□ -0.49
CTDNEP1-203ENST00000570385 RTL1A6NKG5 1358 aa11.99□□□□□ -0.49
CTDNEP1-203ENST00000570385 NSD2O96028 1365 aa11.99□□□□□ -0.49
CTDNEP1-203ENST00000570385 DOT1LQ8TEK3 1739 aa11.99□□□□□ -0.49
CTDNEP1-203ENST00000570385 SHANK3Q9BYB0 1731 aa11.98□□□□□ -0.49
CTDNEP1-203ENST00000570385 SMG6Q86US8 1419 aaKnown RBP11.98□□□□□ -0.49
CTDNEP1-203ENST00000570385 MSH5O43196 834 aa11.98□□□□□ -0.49
CTDNEP1-203ENST00000570385 CDCA8Q53HL2 280 aa11.98□□□□□ -0.49
CTDNEP1-203ENST00000570385 NSD3Q9BZ95 1437 aa11.97□□□□□ -0.49
CTDNEP1-203ENST00000570385 MPRIPQ6WCQ1 1025 aa11.97□□□□□ -0.49
CTDNEP1-203ENST00000570385 PELP1Q8IZL8 1130 aaKnown RBP11.97□□□□□ -0.49
CTDNEP1-203ENST00000570385 INSRP06213 1382 aa11.96□□□□□ -0.49
CTDNEP1-203ENST00000570385 FLT4P35916 1363 aa11.96□□□□□ -0.49
CTDNEP1-203ENST00000570385 POLD1P28340 1107 aa11.96□□□□□ -0.49
CTDNEP1-203ENST00000570385 KIF20BQ96Q89 1820 aa11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 CGNL1Q0VF96 1302 aa11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 CYP27B1O15528 508 aa11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 TNNT2P45379 298 aaPredicted RBP11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 GPR162Q16538 588 aa11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 MSL1Q68DK7 614 aa11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 COL23A1Q86Y22 540 aaPredicted RBP11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 ZNF784Q8NCA9 323 aaPredicted RBP11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 SLC16A10Q8TF71 515 aa11.95□□□□□ -0.5
CTDNEP1-203ENST00000570385 UTRNP46939 3433 aa11.94□□□□□ -0.5
CTDNEP1-203ENST00000570385 PCDH11XQ9BZA7 1347 aa11.94□□□□□ -0.5
CTDNEP1-203ENST00000570385 PCDH11YQ9BZA8 1340 aa11.94□□□□□ -0.5
CTDNEP1-203ENST00000570385 NLGN2Q8NFZ4 835 aa11.94□□□□□ -0.5
CTDNEP1-203ENST00000570385 TUBGCP6Q96RT7 1819 aa11.94□□□□□ -0.5
CTDNEP1-203ENST00000570385 LY75O60449 1722 aa11.94□□□□□ -0.5
CTDNEP1-203ENST00000570385 SMIM5Q71RC9 77 aa11.93□□□□□ -0.5
CTDNEP1-203ENST00000570385 PALLDQ8WX93 1383 aa11.92□□□□□ -0.5
CTDNEP1-203ENST00000570385 MAP3K5Q99683 1374 aa11.92□□□□□ -0.5
CTDNEP1-203ENST00000570385 PIGBQ92521 554 aa11.91□□□□□ -0.5
CTDNEP1-203ENST00000570385 EYA1Q99502 592 aa11.91□□□□□ -0.5
CTDNEP1-203ENST00000570385 KIF24Q5T7B8 1368 aa11.91□□□□□ -0.5
CTDNEP1-203ENST00000570385 QSER1Q2KHR3 1735 aa11.9□□□□□ -0.5
CTDNEP1-203ENST00000570385 AMIGO3Q86WK7 504 aa11.9□□□□□ -0.5
CTDNEP1-203ENST00000570385 POLKQ9UBT6 870 aa11.9□□□□□ -0.5
CTDNEP1-203ENST00000570385 CHD4Q14839 1912 aa11.9□□□□□ -0.51
CTDNEP1-203ENST00000570385 WASHC2AQ641Q2 1341 aa11.89□□□□□ -0.51
CTDNEP1-203ENST00000570385 MAP2P11137 1827 aaKnown RBP11.89□□□□□ -0.51
CTDNEP1-203ENST00000570385 PHF14O94880 888 aa11.89□□□□□ -0.51
CTDNEP1-203ENST00000570385 TIMELESSQ9UNS1 1208 aa11.89□□□□□ -0.51
CTDNEP1-203ENST00000570385 SPG7Q9UQ90 795 aa11.89□□□□□ -0.51
CTDNEP1-203ENST00000570385 HSPA5P11021 654 aaKnown RBP11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 YBX3P16989 372 aaKnown RBP eCLIP11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 SMARCC1Q92922 1105 aaPredicted RBP11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 AK7Q96M32 723 aa11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 WWC3Q9ULE0 1092 aa11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 TOGARAM1Q9Y4F4 1720 aa11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 ITGB4P16144 1822 aa11.88□□□□□ -0.51
CTDNEP1-203ENST00000570385 EIF4A2Q14240 407 aaKnown RBP11.87□□□□□ -0.51
CTDNEP1-203ENST00000570385 PANK3Q9H999 370 aa11.87□□□□□ -0.51
CTDNEP1-203ENST00000570385 ASAP1Q9ULH1 1129 aa11.87□□□□□ -0.51
CTDNEP1-203ENST00000570385 C5P01031 1676 aa11.87□□□□□ -0.51
CTDNEP1-203ENST00000570385 LOC102724428A0A0B4J2F2 783 aa11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 SIK1P57059 783 aa11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 EIF4G2P78344 907 aaKnown RBP eCLIP11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 NKX1-1Q15270 411 aaPredicted RBP11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 LINC00116Q8NCU8 138 aa11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 TMOD3Q9NYL9 352 aa11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 COL24A1Q17RW2 1714 aa11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 PKD1L3Q7Z443 1732 aa11.86□□□□□ -0.51
CTDNEP1-203ENST00000570385 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.85□□□□□ -0.51
CTDNEP1-203ENST00000570385 PHKG2P15735 406 aa11.85□□□□□ -0.51
CTDNEP1-203ENST00000570385 IFNL2Q8IZJ0 200 aa11.85□□□□□ -0.51
CTDNEP1-203ENST00000570385 FLAD1Q8NFF5 587 aa11.85□□□□□ -0.51
CTDNEP1-203ENST00000570385 TAF1LQ8IZX4 1826 aa11.85□□□□□ -0.51
CTDNEP1-203ENST00000570385 NCAPD2Q15021 1401 aa11.85□□□□□ -0.51
CTDNEP1-203ENST00000570385 C4BP0C0L5 1744 aa11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 ATP6V1AP38606 617 aa11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 ITPK1Q13572 414 aa11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 CCER1Q8TC90 406 aaPredicted RBP11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 ATG3Q9NT62 314 aa11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 CLSPNQ9HAW4 1339 aa11.84□□□□□ -0.51
CTDNEP1-203ENST00000570385 ANKRD26Q9UPS8 1709 aa11.83□□□□□ -0.52
CTDNEP1-203ENST00000570385 GOLGB1Q14789 3259 aaKnown RBP11.83□□□□□ -0.52
CTDNEP1-203ENST00000570385 GNPATO15228 680 aa11.83□□□□□ -0.52
CTDNEP1-203ENST00000570385 SENP3-EIF4A1A0A087X0R7 540 aa11.82□□□□□ -0.52
CTDNEP1-203ENST00000570385 GRIN3BO60391 1043 aa11.82□□□□□ -0.52
CTDNEP1-203ENST00000570385 C1QTNF8P60827 252 aa11.82□□□□□ -0.52
CTDNEP1-203ENST00000570385 MORC1Q86VD1 984 aa11.82□□□□□ -0.52
CTDNEP1-203ENST00000570385 AEBP1Q8IUX7 1158 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms