RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 COG3Q96JB2 828 aa14.23□□□□□ -0.13
VPS39-211ENST00000568755 LRRC4BQ9NT99 713 aa14.23□□□□□ -0.13
VPS39-211ENST00000568755 MEGF6O75095 1541 aa14.22□□□□□ -0.13
VPS39-211ENST00000568755 KCNA4P22459 653 aa14.22□□□□□ -0.13
VPS39-211ENST00000568755 FBLN1P23142 703 aa14.22□□□□□ -0.13
VPS39-211ENST00000568755 LTV1Q96GA3 475 aaPredicted RBP14.22□□□□□ -0.13
VPS39-211ENST00000568755 RTL1A6NKG5 1358 aa14.22□□□□□ -0.13
VPS39-211ENST00000568755 TAF1LQ8IZX4 1826 aa14.21□□□□□ -0.13
VPS39-211ENST00000568755 SLC24A1O60721 1099 aa14.21□□□□□ -0.13
VPS39-211ENST00000568755 SYT17Q9BSW7 474 aa14.21□□□□□ -0.13
VPS39-211ENST00000568755 FHDC1Q9C0D6 1143 aaPredicted RBP14.21□□□□□ -0.13
VPS39-211ENST00000568755 NSD2O96028 1365 aa14.21□□□□□ -0.14
VPS39-211ENST00000568755 DDX54Q8TDD1 881 aaKnown RBP14.2□□□□□ -0.14
VPS39-211ENST00000568755 AKT1S1Q96B36 256 aa14.2□□□□□ -0.14
VPS39-211ENST00000568755 MAP3K5Q99683 1374 aa14.2□□□□□ -0.14
VPS39-211ENST00000568755 ITGB4P16144 1822 aa14.2□□□□□ -0.14
VPS39-211ENST00000568755 AMPHP49418 695 aa14.19□□□□□ -0.14
VPS39-211ENST00000568755 SLC27A3Q5K4L6 730 aa14.19□□□□□ -0.14
VPS39-211ENST00000568755 USP47Q96K76 1375 aa14.19□□□□□ -0.14
VPS39-211ENST00000568755 ANKRD26Q9UPS8 1709 aa14.18□□□□□ -0.14
VPS39-211ENST00000568755 MAP2P11137 1827 aaKnown RBP14.18□□□□□ -0.14
VPS39-211ENST00000568755 FYB1O15117 783 aa14.18□□□□□ -0.14
VPS39-211ENST00000568755 C5P01031 1676 aa14.17□□□□□ -0.14
VPS39-211ENST00000568755 RRS1Q15050 365 aaKnown RBP14.17□□□□□ -0.14
VPS39-211ENST00000568755 ZCRB1Q8TBF4 217 aaKnown RBP14.17□□□□□ -0.14
VPS39-211ENST00000568755 ARXQ96QS3 562 aa14.17□□□□□ -0.14
VPS39-211ENST00000568755 PKD1L3Q7Z443 1732 aa14.17□□□□□ -0.14
VPS39-211ENST00000568755 PNPLA7Q6ZV29 1317 aa14.16□□□□□ -0.14
VPS39-211ENST00000568755 TOGARAM1Q9Y4F4 1720 aa14.16□□□□□ -0.14
VPS39-211ENST00000568755 PRIM1P49642 420 aaKnown RBP14.16□□□□□ -0.14
VPS39-211ENST00000568755 TMF1P82094 1093 aa14.16□□□□□ -0.14
VPS39-211ENST00000568755 NBPF6Q5VWK0 638 aa14.16□□□□□ -0.14
VPS39-211ENST00000568755 NBPF4Q96M43 638 aa14.16□□□□□ -0.14
VPS39-211ENST00000568755 GGNBP2Q9H3C7 697 aa14.16□□□□□ -0.14
VPS39-211ENST00000568755 CGNL1Q0VF96 1302 aa14.15□□□□□ -0.15
VPS39-211ENST00000568755 INSRP06213 1382 aa14.14□□□□□ -0.15
VPS39-211ENST00000568755 KCNQ4P56696 695 aa14.14□□□□□ -0.15
VPS39-211ENST00000568755 SLC16A10Q8TF71 515 aa14.14□□□□□ -0.15
VPS39-211ENST00000568755 SYTL4Q96C24 671 aaPredicted RBP14.14□□□□□ -0.15
VPS39-211ENST00000568755 SMG6Q86US8 1419 aaKnown RBP14.14□□□□□ -0.15
VPS39-211ENST00000568755 KIF24Q5T7B8 1368 aa14.13□□□□□ -0.15
VPS39-211ENST00000568755 USHBP1Q8N6Y0 703 aa14.13□□□□□ -0.15
VPS39-211ENST00000568755 FLT4P35916 1363 aa14.12□□□□□ -0.15
VPS39-211ENST00000568755 ZNF784Q8NCA9 323 aaPredicted RBP14.12□□□□□ -0.15
VPS39-211ENST00000568755 UBR3Q6ZT12 1888 aa14.12□□□□□ -0.15
VPS39-211ENST00000568755 NCAPD2Q15021 1401 aa14.11□□□□□ -0.15
VPS39-211ENST00000568755 HSP90AB2PQ58FF8 381 aa14.11□□□□□ -0.15
VPS39-211ENST00000568755 TFCP2L1Q9NZI6 479 aa14.11□□□□□ -0.15
VPS39-211ENST00000568755 CDCA8Q53HL2 280 aa14.1□□□□□ -0.15
VPS39-211ENST00000568755 RAPGEF4Q8WZA2 1011 aa14.1□□□□□ -0.15
VPS39-211ENST00000568755 CARD14Q9BXL6 1004 aa14.1□□□□□ -0.15
VPS39-211ENST00000568755 CCNL1Q9UK58 526 aaPredicted RBP14.1□□□□□ -0.15
VPS39-211ENST00000568755 NSD3Q9BZ95 1437 aa14.09□□□□□ -0.15
VPS39-211ENST00000568755 TATP17735 454 aaPredicted RBP14.09□□□□□ -0.15
VPS39-211ENST00000568755 POLD1P28340 1107 aa14.09□□□□□ -0.15
VPS39-211ENST00000568755 TRIM26Q12899 539 aaPredicted RBP14.09□□□□□ -0.15
VPS39-211ENST00000568755 C4BP0C0L5 1744 aa14.09□□□□□ -0.15
VPS39-211ENST00000568755 PCDH11XQ9BZA7 1347 aa14.09□□□□□ -0.15
VPS39-211ENST00000568755 PCDH11YQ9BZA8 1340 aa14.09□□□□□ -0.15
VPS39-211ENST00000568755 EMILIN1Q9Y6C2 1016 aa14.07□□□□□ -0.16
VPS39-211ENST00000568755 CYP27B1O15528 508 aa14.06□□□□□ -0.16
VPS39-211ENST00000568755 COL23A1Q86Y22 540 aaPredicted RBP14.06□□□□□ -0.16
VPS39-211ENST00000568755 PALLDQ8WX93 1383 aa14.06□□□□□ -0.16
VPS39-211ENST00000568755 GPR162Q16538 588 aa14.05□□□□□ -0.16
VPS39-211ENST00000568755 KLHL34Q8N239 644 aa14.05□□□□□ -0.16
VPS39-211ENST00000568755 NLGN2Q8NFZ4 835 aa14.05□□□□□ -0.16
VPS39-211ENST00000568755 CEP350Q5VT06 3117 aa14.04□□□□□ -0.16
VPS39-211ENST00000568755 TIMELESSQ9UNS1 1208 aa14.03□□□□□ -0.16
VPS39-211ENST00000568755 WASHC2AQ641Q2 1341 aa14.03□□□□□ -0.16
VPS39-211ENST00000568755 NKX1-1Q15270 411 aaPredicted RBP14.02□□□□□ -0.17
VPS39-211ENST00000568755 MPRIPQ6WCQ1 1025 aa14.02□□□□□ -0.17
VPS39-211ENST00000568755 MSL1Q68DK7 614 aa14.01□□□□□ -0.17
VPS39-211ENST00000568755 AMIGO3Q86WK7 504 aa14.01□□□□□ -0.17
VPS39-211ENST00000568755 YBX3P16989 372 aaKnown RBP eCLIP14□□□□□ -0.17
VPS39-211ENST00000568755 HMGB2P26583 209 aaKnown RBP14□□□□□ -0.17
VPS39-211ENST00000568755 PIGBQ92521 554 aa14□□□□□ -0.17
VPS39-211ENST00000568755 SMARCC1Q92922 1105 aaPredicted RBP14□□□□□ -0.17
VPS39-211ENST00000568755 EYA1Q99502 592 aa14□□□□□ -0.17
VPS39-211ENST00000568755 CLSPNQ9HAW4 1339 aa13.99□□□□□ -0.17
VPS39-211ENST00000568755 ZNF831Q5JPB2 1677 aa13.99□□□□□ -0.17
VPS39-211ENST00000568755 PPM1GO15355 546 aaPredicted RBP13.99□□□□□ -0.17
VPS39-211ENST00000568755 PELP1Q8IZL8 1130 aaKnown RBP13.99□□□□□ -0.17
VPS39-211ENST00000568755 FLAD1Q8NFF5 587 aa13.99□□□□□ -0.17
VPS39-211ENST00000568755 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.99□□□□□ -0.17
VPS39-211ENST00000568755 POLKQ9UBT6 870 aa13.99□□□□□ -0.17
VPS39-211ENST00000568755 KIF13BQ9NQT8 1826 aa13.99□□□□□ -0.17
VPS39-211ENST00000568755 COL5A3P25940 1745 aaPredicted RBP13.98□□□□□ -0.17
VPS39-211ENST00000568755 PLEKHG2Q9H7P9 1386 aa13.98□□□□□ -0.17
VPS39-211ENST00000568755 MYH14Q7Z406 1995 aaKnown RBP13.98□□□□□ -0.17
VPS39-211ENST00000568755 SPG7Q9UQ90 795 aa13.98□□□□□ -0.17
VPS39-211ENST00000568755 VIRMAQ69YN4 1812 aaKnown RBP13.98□□□□□ -0.17
VPS39-211ENST00000568755 C1QTNF8P60827 252 aa13.97□□□□□ -0.17
VPS39-211ENST00000568755 LOC102724428A0A0B4J2F2 783 aa13.96□□□□□ -0.17
VPS39-211ENST00000568755 GRIN3BO60391 1043 aa13.96□□□□□ -0.17
VPS39-211ENST00000568755 PHKG2P15735 406 aa13.96□□□□□ -0.17
VPS39-211ENST00000568755 SIK1P57059 783 aa13.96□□□□□ -0.17
VPS39-211ENST00000568755 EIF4A2Q14240 407 aaKnown RBP13.96□□□□□ -0.17
VPS39-211ENST00000568755 LINC00116Q8NCU8 138 aa13.96□□□□□ -0.17
VPS39-211ENST00000568755 AK7Q96M32 723 aa13.96□□□□□ -0.17
VPS39-211ENST00000568755 CD2APQ9Y5K6 639 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms