RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 GTF3C3Q9Y5Q9 886 aa5.27□□□□□ -1.57
VPS35-208ENST00000568612 PIK3CDO00329 1044 aa5.26□□□□□ -1.57
VPS35-208ENST00000568612 SPINT1O43278 529 aa5.26□□□□□ -1.57
VPS35-208ENST00000568612 CTSOP43234 321 aaPredicted RBP5.26□□□□□ -1.57
VPS35-208ENST00000568612 HDGFL1Q5TGJ6 251 aa5.26□□□□□ -1.57
VPS35-208ENST00000568612 PLPP7Q8NBV4 271 aa5.26□□□□□ -1.57
VPS35-208ENST00000568612 SOS2Q07890 1332 aaPredicted RBP5.25□□□□□ -1.57
VPS35-208ENST00000568612 VEGFBP49765 207 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 USP4Q13107 963 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.25□□□□□ -1.57
VPS35-208ENST00000568612 PHTF2Q8N3S3 785 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 NLRP3Q96P20 1036 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 OSBPL3Q9H4L5 887 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 ALG2Q9H553 416 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 ARHGEF10LQ9HCE6 1279 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 RAB6BQ9NRW1 208 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 DNMT3LQ9UJW3 386 aa5.25□□□□□ -1.57
VPS35-208ENST00000568612 A0A1W2PRU2 124 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 A6NJR5 290 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 MAP7D1Q3KQU3 841 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 DEPDC4Q8N2C3 294 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 KDF1Q8NAX2 398 aaPredicted RBP5.24□□□□□ -1.57
VPS35-208ENST00000568612 ADAMTS19Q8TE59 1207 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 GLMNQ92990 594 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 SIRT1Q96EB6 747 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 BCL11AQ9H165 835 aa5.24□□□□□ -1.57
VPS35-208ENST00000568612 EML3Q32P44 896 aa5.23□□□□□ -1.57
VPS35-208ENST00000568612 SLC27A3Q5K4L6 730 aa5.23□□□□□ -1.57
VPS35-208ENST00000568612 PRICKLE2Q7Z3G6 844 aa5.23□□□□□ -1.57
VPS35-208ENST00000568612 CALR3Q96L12 384 aaKnown RBP5.23□□□□□ -1.57
VPS35-208ENST00000568612 ZNF777Q9ULD5 760 aaPredicted RBP5.23□□□□□ -1.57
VPS35-208ENST00000568612 TERTO14746 1132 aaKnown RBP5.22□□□□□ -1.57
VPS35-208ENST00000568612 GNRH1P01148 92 aa5.22□□□□□ -1.57
VPS35-208ENST00000568612 PSME1Q06323 249 aa5.22□□□□□ -1.57
VPS35-208ENST00000568612 NCOA4Q13772 614 aa5.22□□□□□ -1.57
VPS35-208ENST00000568612 FOXD4L5Q5VV16 416 aaPredicted RBP5.22□□□□□ -1.57
VPS35-208ENST00000568612 FNBP4Q8N3X1 1017 aaPredicted RBP5.22□□□□□ -1.57
VPS35-208ENST00000568612 RNF217Q8TC41 542 aa5.22□□□□□ -1.57
VPS35-208ENST00000568612 SLC16A10Q8TF71 515 aa5.22□□□□□ -1.57
VPS35-208ENST00000568612 NXF1Q9UBU9 619 aaKnown RBP5.22□□□□□ -1.57
VPS35-208ENST00000568612 USP17L5A8MUK1 530 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 TRAK2O60296 914 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 WFS1O76024 890 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 STAU1O95793 577 aaKnown RBP5.21□□□□□ -1.58
VPS35-208ENST00000568612 RHOQP17081 205 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 PTSQ03393 145 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 ESCO1Q5FWF5 840 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 TBC1D9Q6ZT07 1266 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 LYSMD3Q7Z3D4 306 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 CNKSR1Q969H4 720 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 NOD1Q9Y239 953 aa5.21□□□□□ -1.58
VPS35-208ENST00000568612 GTF2E1P29083 439 aaPredicted RBP5.2□□□□□ -1.58
VPS35-208ENST00000568612 CLN3Q13286 438 aa5.2□□□□□ -1.58
VPS35-208ENST00000568612 UCN2Q96RP3 112 aa5.2□□□□□ -1.58
VPS35-208ENST00000568612 USP17L3A6NCW0 530 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 USP17L4A6NCW7 530 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 ATP9BO43861 1147 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 IL2RAP01589 272 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 RNF144AP50876 292 aaPredicted RBP5.19□□□□□ -1.58
VPS35-208ENST00000568612 GDF10P55107 478 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 GTF2IP78347 998 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 TMEM214Q6NUQ4 689 aaKnown RBP5.19□□□□□ -1.58
VPS35-208ENST00000568612 USP17L2Q6R6M4 530 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 TREML4Q6UXN2 200 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 USP17L1Q7RTZ2 530 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 NFATC2IPQ8NCF5 419 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 ZSCAN10Q96SZ4 725 aaPredicted RBP5.19□□□□□ -1.58
VPS35-208ENST00000568612 ESYT1Q9BSJ8 1104 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 ZMYND15Q9H091 742 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 ETNK1Q9HBU6 452 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 TFIP11Q9UBB9 837 aaKnown RBP5.19□□□□□ -1.58
VPS35-208ENST00000568612 SERTAD1Q9UHV2 236 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 CHIC2Q9UKJ5 165 aa5.19□□□□□ -1.58
VPS35-208ENST00000568612 H3BM21 787 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 PPFIA3O75145 1194 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 GPC1P35052 558 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 CENPCQ03188 943 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 POU4F2Q12837 409 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 NFX1Q12986 1120 aaKnown RBP5.18□□□□□ -1.58
VPS35-208ENST00000568612 TLR1Q15399 786 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 C14orf37Q86TY3 774 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 CCDC155Q8N6L0 562 aa5.18□□□□□ -1.58
VPS35-208ENST00000568612 CDC14CA4D256 554 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 PALM3A6NDB9 673 aaPredicted RBP5.17□□□□□ -1.58
VPS35-208ENST00000568612 LZTS3O60299 673 aaPredicted RBP5.17□□□□□ -1.58
VPS35-208ENST00000568612 PHKA2P46019 1235 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 GNASQ5JWF2 1037 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 RIPOR1Q6ZS17 1223 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 TRIM50Q86XT4 487 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 IRF7Q92985 503 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 XAGE2Q96GT9 111 aa5.17□□□□□ -1.58
VPS35-208ENST00000568612 GAS2L1Q99501 681 aaPredicted RBP5.17□□□□□ -1.58
VPS35-208ENST00000568612 SLC35F4A4IF30 521 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 WASLO00401 505 aaPredicted RBP5.16□□□□□ -1.58
VPS35-208ENST00000568612 INHAP05111 366 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 LMOD1P29536 600 aaPredicted RBP5.16□□□□□ -1.58
VPS35-208ENST00000568612 ATP1A2P50993 1020 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 SCNN1DP51172 638 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 TAS1R3Q7RTX0 852 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 NPAS3Q8IXF0 933 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms