RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 DCTN1Q14203 1278 aa24.57■■□□□ 1.52
CLN3-233ENST00000568452 AMOTQ4VCS5 1084 aa24.57■■□□□ 1.52
CLN3-233ENST00000568452 PLEKHO1Q53GL0 409 aaPredicted RBP24.57■■□□□ 1.52
CLN3-233ENST00000568452 PPP4R2Q9NY27 417 aa24.57■■□□□ 1.52
CLN3-233ENST00000568452 CSB-PGBD3P0DP91 1061 aa24.57■■□□□ 1.52
CLN3-233ENST00000568452 MAP3K5Q99683 1374 aa24.56■■□□□ 1.52
CLN3-233ENST00000568452 RARSP54136 660 aaKnown RBP24.56■■□□□ 1.52
CLN3-233ENST00000568452 NLRP2Q9NX02 1062 aa24.56■■□□□ 1.52
CLN3-233ENST00000568452 MCM10Q7L590 875 aa24.55■■□□□ 1.52
CLN3-233ENST00000568452 PLEKHG2Q9H7P9 1386 aa24.55■■□□□ 1.52
CLN3-233ENST00000568452 COL16A1Q07092 1604 aaPredicted RBP24.54■■□□□ 1.52
CLN3-233ENST00000568452 ZNF428Q96B54 188 aa24.53■■□□□ 1.52
CLN3-233ENST00000568452 MBIPQ9NS73 344 aa24.53■■□□□ 1.52
CLN3-233ENST00000568452 PLIN1O60240 522 aa24.53■■□□□ 1.52
CLN3-233ENST00000568452 BCAR3O75815 825 aa24.53■■□□□ 1.52
CLN3-233ENST00000568452 COL22A1Q8NFW1 1626 aaPredicted RBP24.53■■□□□ 1.52
CLN3-233ENST00000568452 CRB1P82279 1406 aa24.52■■□□□ 1.52
CLN3-233ENST00000568452 RAPGEF4Q8WZA2 1011 aa24.52■■□□□ 1.52
CLN3-233ENST00000568452 FBXO41Q8TF61 875 aa24.51■■□□□ 1.51
CLN3-233ENST00000568452 CHL1O00533 1208 aa24.5■■□□□ 1.51
CLN3-233ENST00000568452 AKAP4Q5JQC9 854 aa24.5■■□□□ 1.51
CLN3-233ENST00000568452 WDR17Q8IZU2 1322 aa24.49■■□□□ 1.51
CLN3-233ENST00000568452 LRRC37A3O60309 1634 aa24.49■■□□□ 1.51
CLN3-233ENST00000568452 TATP17735 454 aaPredicted RBP24.49■■□□□ 1.51
CLN3-233ENST00000568452 ZNF530Q6P9A1 599 aaPredicted RBP24.49■■□□□ 1.51
CLN3-233ENST00000568452 COL5A2P05997 1499 aaPredicted RBP24.48■■□□□ 1.51
CLN3-233ENST00000568452 CANXP27824 592 aaKnown RBP24.47■■□□□ 1.51
CLN3-233ENST00000568452 HSPA1LP34931 641 aa24.47■■□□□ 1.51
CLN3-233ENST00000568452 ALDH1L2Q3SY69 923 aa24.47■■□□□ 1.51
CLN3-233ENST00000568452 C1orf141Q5JVX7 400 aa24.47■■□□□ 1.51
CLN3-233ENST00000568452 BABAM1Q9NWV8 329 aa24.47■■□□□ 1.51
CLN3-233ENST00000568452 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.47■■□□□ 1.51
CLN3-233ENST00000568452 PDE3AQ14432 1141 aa24.45■■□□□ 1.5
CLN3-233ENST00000568452 IL17REQ8NFR9 667 aa24.45■■□□□ 1.5
CLN3-233ENST00000568452 SMC4Q9NTJ3 1288 aa24.45■■□□□ 1.5
CLN3-233ENST00000568452 EXOC6Q8TAG9 804 aa24.44■■□□□ 1.5
CLN3-233ENST00000568452 SPG7Q9UQ90 795 aa24.44■■□□□ 1.5
CLN3-233ENST00000568452 CEMIPQ8WUJ3 1361 aa24.44■■□□□ 1.5
CLN3-233ENST00000568452 EVA1CP58658 441 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 TWISTNBQ3B726 338 aaPredicted RBP24.43■■□□□ 1.5
CLN3-233ENST00000568452 TOM1L2Q6ZVM7 507 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 TSPYL4Q9UJ04 414 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 OVOS2A0A0G2JMS6 1433 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 COL14A1Q05707 1796 aaKnown RBP24.43■■□□□ 1.5
CLN3-233ENST00000568452 VAMP4O75379 141 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 TAF7Q15545 349 aaPredicted RBP24.43■■□□□ 1.5
CLN3-233ENST00000568452 SSH1Q8WYL5 1049 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 CRBNQ96SW2 442 aa24.43■■□□□ 1.5
CLN3-233ENST00000568452 C20orf194Q5TEA3 1177 aa24.42■■□□□ 1.5
CLN3-233ENST00000568452 FRAT1Q92837 279 aaPredicted RBP24.42■■□□□ 1.5
CLN3-233ENST00000568452 BCL2L13Q9BXK5 485 aa24.42■■□□□ 1.5
CLN3-233ENST00000568452 MEGF6O75095 1541 aa24.41■■□□□ 1.5
CLN3-233ENST00000568452 MS4A1P11836 297 aa24.41■■□□□ 1.5
CLN3-233ENST00000568452 CARD10Q9BWT7 1032 aa24.41■■□□□ 1.5
CLN3-233ENST00000568452 JCADQ9P266 1359 aa24.41■■□□□ 1.5
CLN3-233ENST00000568452 KIF16BQ96L93 1317 aa24.4■■□□□ 1.5
CLN3-233ENST00000568452 BRPF1P55201 1214 aaPredicted RBP24.4■■□□□ 1.5
CLN3-233ENST00000568452 C8orf58Q8NAV2 365 aa24.4■■□□□ 1.5
CLN3-233ENST00000568452 PELP1Q8IZL8 1130 aaKnown RBP24.39■■□□□ 1.5
CLN3-233ENST00000568452 TSPYL6Q8N831 410 aa24.39■■□□□ 1.5
CLN3-233ENST00000568452 ZKSCAN2Q63HK3 967 aa24.39■■□□□ 1.49
CLN3-233ENST00000568452 STRN4Q9NRL3 753 aa24.39■■□□□ 1.49
CLN3-233ENST00000568452 RNMTO43148 476 aaKnown RBP24.38■■□□□ 1.49
CLN3-233ENST00000568452 IPO8O15397 1037 aaKnown RBP24.37■■□□□ 1.49
CLN3-233ENST00000568452 TEFQ10587 303 aa24.37■■□□□ 1.49
CLN3-233ENST00000568452 CCDC136Q96JN2 1154 aa24.37■■□□□ 1.49
CLN3-233ENST00000568452 PKD1L3Q7Z443 1732 aa24.36■■□□□ 1.49
CLN3-233ENST00000568452 PARP4Q9UKK3 1724 aaKnown RBP24.36■■□□□ 1.49
CLN3-233ENST00000568452 ELL2O00472 640 aaPredicted RBP24.36■■□□□ 1.49
CLN3-233ENST00000568452 BTG4Q9NY30 223 aa24.36■■□□□ 1.49
CLN3-233ENST00000568452 SOS1Q07889 1333 aaPredicted RBP24.36■■□□□ 1.49
CLN3-233ENST00000568452 B4GALNT3Q6L9W6 998 aa24.35■■□□□ 1.49
CLN3-233ENST00000568452 MPRIPQ6WCQ1 1025 aa24.35■■□□□ 1.49
CLN3-233ENST00000568452 IFNL2Q8IZJ0 200 aa24.35■■□□□ 1.49
CLN3-233ENST00000568452 LGR6Q9HBX8 967 aa24.35■■□□□ 1.49
CLN3-233ENST00000568452 LARP1Q6PKG0 1096 aaKnown RBP24.35■■□□□ 1.49
CLN3-233ENST00000568452 MIS18AQ9NYP9 233 aa24.35■■□□□ 1.49
CLN3-233ENST00000568452 HSP90AB1P08238 724 aaKnown RBP24.34■■□□□ 1.49
CLN3-233ENST00000568452 PHKG2P15735 406 aa24.34■■□□□ 1.49
CLN3-233ENST00000568452 ADAMTS7Q9UKP4 1686 aa24.33■■□□□ 1.49
CLN3-233ENST00000568452 IL2RBP14784 551 aa24.33■■□□□ 1.49
CLN3-233ENST00000568452 MRPL50Q8N5N7 158 aaKnown RBP24.32■■□□□ 1.48
CLN3-233ENST00000568452 NUTM2BA6NNL0 878 aaPredicted RBP24.32■■□□□ 1.48
CLN3-233ENST00000568452 NUTM2EB1AL46 878 aaPredicted RBP24.32■■□□□ 1.48
CLN3-233ENST00000568452 ATF7IPQ6VMQ6 1270 aa24.32■■□□□ 1.48
CLN3-233ENST00000568452 NUTM2AQ8IVF1 878 aaPredicted RBP24.32■■□□□ 1.48
CLN3-233ENST00000568452 NOB1Q9ULX3 412 aaKnown RBP24.32■■□□□ 1.48
CLN3-233ENST00000568452 FTSJ3Q8IY81 847 aaKnown RBP24.31■■□□□ 1.48
CLN3-233ENST00000568452 DZIP1LQ8IYY4 767 aaKnown RBP24.31■■□□□ 1.48
CLN3-233ENST00000568452 AAMPQ13685 434 aa24.3■■□□□ 1.48
CLN3-233ENST00000568452 ZCRB1Q8TBF4 217 aaKnown RBP24.3■■□□□ 1.48
CLN3-233ENST00000568452 PANK1Q8TE04 598 aa24.3■■□□□ 1.48
CLN3-233ENST00000568452 ARHGAP45Q92619 1136 aa24.3■■□□□ 1.48
CLN3-233ENST00000568452 SPATA31A6Q5VVP1 1343 aa24.3■■□□□ 1.48
CLN3-233ENST00000568452 KRT24Q2M2I5 525 aa24.29■■□□□ 1.48
CLN3-233ENST00000568452 PCDH11XQ9BZA7 1347 aa24.29■■□□□ 1.48
CLN3-233ENST00000568452 PCDH11YQ9BZA8 1340 aa24.29■■□□□ 1.48
CLN3-233ENST00000568452 DCAF5Q96JK2 942 aa24.28■■□□□ 1.48
CLN3-233ENST00000568452 VIRMAQ69YN4 1812 aaKnown RBP24.28■■□□□ 1.48
CLN3-233ENST00000568452 BTBD11A6QL63 1104 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms