RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PDGFDQ9GZP0 370 aaPredicted RBP20.61■□□□□ 0.89
VPS39-210ENST00000568357 TNS2Q63HR2 1409 aa20.61■□□□□ 0.89
VPS39-210ENST00000568357 WNK3Q9BYP7 1800 aa20.6■□□□□ 0.89
VPS39-210ENST00000568357 AMER1Q5JTC6 1135 aaPredicted RBP20.6■□□□□ 0.89
VPS39-210ENST00000568357 IFFO2Q5TF58 517 aa20.6■□□□□ 0.89
VPS39-210ENST00000568357 BCL9O00512 1426 aa20.6■□□□□ 0.89
VPS39-210ENST00000568357 MORC1Q86VD1 984 aa20.59■□□□□ 0.89
VPS39-210ENST00000568357 BCL11BQ9C0K0 894 aaPredicted RBP20.59■□□□□ 0.89
VPS39-210ENST00000568357 NSD2O96028 1365 aa20.59■□□□□ 0.89
VPS39-210ENST00000568357 SMG6Q86US8 1419 aaKnown RBP20.58■□□□□ 0.88
VPS39-210ENST00000568357 C1QTNF8P60827 252 aa20.57■□□□□ 0.88
VPS39-210ENST00000568357 DDX54Q8TDD1 881 aaKnown RBP20.57■□□□□ 0.88
VPS39-210ENST00000568357 ZBTB7AO95365 584 aa20.56■□□□□ 0.88
VPS39-210ENST00000568357 MEGF6O75095 1541 aa20.55■□□□□ 0.88
VPS39-210ENST00000568357 PTGER2P43116 358 aa20.55■□□□□ 0.88
VPS39-210ENST00000568357 ZCRB1Q8TBF4 217 aaKnown RBP20.55■□□□□ 0.88
VPS39-210ENST00000568357 ACSBG1Q96GR2 724 aa20.55■□□□□ 0.88
VPS39-210ENST00000568357 FAM208AQ9UK61 1670 aaKnown RBP20.54■□□□□ 0.88
VPS39-210ENST00000568357 EYA1Q99502 592 aa20.54■□□□□ 0.88
VPS39-210ENST00000568357 RGPD2P0DJD1 1756 aa20.54■□□□□ 0.88
VPS39-210ENST00000568357 PLSCR1O15162 318 aa20.53■□□□□ 0.88
VPS39-210ENST00000568357 EIF4A2Q14240 407 aaKnown RBP20.53■□□□□ 0.88
VPS39-210ENST00000568357 RAPGEF4Q8WZA2 1011 aa20.53■□□□□ 0.88
VPS39-210ENST00000568357 CC2D1BQ5T0F9 858 aaKnown RBP20.52■□□□□ 0.88
VPS39-210ENST00000568357 TATP17735 454 aaPredicted RBP20.51■□□□□ 0.87
VPS39-210ENST00000568357 FHDC1Q9C0D6 1143 aaPredicted RBP20.51■□□□□ 0.87
VPS39-210ENST00000568357 ATF5Q9Y2D1 282 aaPredicted RBP20.51■□□□□ 0.87
VPS39-210ENST00000568357 ANKRD26Q9UPS8 1709 aa20.5■□□□□ 0.87
VPS39-210ENST00000568357 PROM2Q8N271 834 aa20.5■□□□□ 0.87
VPS39-210ENST00000568357 MAP2P11137 1827 aaKnown RBP20.5■□□□□ 0.87
VPS39-210ENST00000568357 SYT17Q9BSW7 474 aa20.49■□□□□ 0.87
VPS39-210ENST00000568357 NCAPD2Q15021 1401 aa20.47■□□□□ 0.87
VPS39-210ENST00000568357 CNGB1Q14028 1251 aaPredicted RBP20.47■□□□□ 0.87
VPS39-210ENST00000568357 PRIM1P49642 420 aaKnown RBP20.45■□□□□ 0.86
VPS39-210ENST00000568357 MTHFSP49914 203 aa20.45■□□□□ 0.86
VPS39-210ENST00000568357 CYP27B1O15528 508 aa20.44■□□□□ 0.86
VPS39-210ENST00000568357 TXNRD1Q16881 649 aa20.44■□□□□ 0.86
VPS39-210ENST00000568357 NPC1L1Q9UHC9 1359 aa20.44■□□□□ 0.86
VPS39-210ENST00000568357 IGSF1Q8N6C5 1336 aa20.43■□□□□ 0.86
VPS39-210ENST00000568357 IL13P35225 146 aa20.42■□□□□ 0.86
VPS39-210ENST00000568357 SYTL4Q96C24 671 aaPredicted RBP20.42■□□□□ 0.86
VPS39-210ENST00000568357 SGIP1Q9BQI5 828 aa20.42■□□□□ 0.86
VPS39-210ENST00000568357 PCDH11XQ9BZA7 1347 aa20.42■□□□□ 0.86
VPS39-210ENST00000568357 PCDH11YQ9BZA8 1340 aa20.42■□□□□ 0.86
VPS39-210ENST00000568357 STK32BQ9NY57 414 aa20.41■□□□□ 0.86
VPS39-210ENST00000568357 SPG7Q9UQ90 795 aa20.41■□□□□ 0.86
VPS39-210ENST00000568357 NHSQ6T4R5 1651 aa20.4■□□□□ 0.86
VPS39-210ENST00000568357 SHANK3Q9BYB0 1731 aa20.4■□□□□ 0.86
VPS39-210ENST00000568357 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.4■□□□□ 0.86
VPS39-210ENST00000568357 PAPPAQ13219 1627 aa20.39■□□□□ 0.86
VPS39-210ENST00000568357 SLC15A2Q16348 729 aa20.39■□□□□ 0.85
VPS39-210ENST00000568357 AEBP1Q8IUX7 1158 aa20.39■□□□□ 0.85
VPS39-210ENST00000568357 MTFR1LQ9H019 292 aa20.39■□□□□ 0.85
VPS39-210ENST00000568357 GIGYF1O75420 1035 aaPredicted RBP20.38■□□□□ 0.85
VPS39-210ENST00000568357 NKX1-1Q15270 411 aaPredicted RBP20.37■□□□□ 0.85
VPS39-210ENST00000568357 SULT6B1Q6IMI4 303 aa20.36■□□□□ 0.85
VPS39-210ENST00000568357 LRRC4BQ9NT99 713 aa20.36■□□□□ 0.85
VPS39-210ENST00000568357 MAP3K5Q99683 1374 aa20.35■□□□□ 0.85
VPS39-210ENST00000568357 PHKG2P15735 406 aa20.35■□□□□ 0.85
VPS39-210ENST00000568357 IFNL2Q8IZJ0 200 aa20.34■□□□□ 0.85
VPS39-210ENST00000568357 ARXQ96QS3 562 aa20.34■□□□□ 0.85
VPS39-210ENST00000568357 DIAPH1O60610 1272 aaKnown RBP20.33■□□□□ 0.85
VPS39-210ENST00000568357 MPRIPQ6WCQ1 1025 aa20.33■□□□□ 0.85
VPS39-210ENST00000568357 BTAF1O14981 1849 aa20.32■□□□□ 0.84
VPS39-210ENST00000568357 KCNQ4P56696 695 aa20.32■□□□□ 0.84
VPS39-210ENST00000568357 PLEKHO1Q53GL0 409 aaPredicted RBP20.32■□□□□ 0.84
VPS39-210ENST00000568357 KDRP35968 1356 aa20.32■□□□□ 0.84
VPS39-210ENST00000568357 CEP350Q5VT06 3117 aa20.31■□□□□ 0.84
VPS39-210ENST00000568357 PKD1L3Q7Z443 1732 aa20.31■□□□□ 0.84
VPS39-210ENST00000568357 PLEKHG2Q9H7P9 1386 aa20.31■□□□□ 0.84
VPS39-210ENST00000568357 DOT1LQ8TEK3 1739 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 HMOX1P09601 288 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 GPR162Q16538 588 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 AMOTQ4VCS5 1084 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 SLC27A3Q5K4L6 730 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 PIGBQ92521 554 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 COL24A1Q17RW2 1714 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 KAT6BQ8WYB5 2073 aa20.3■□□□□ 0.84
VPS39-210ENST00000568357 PPP2R1AP30153 589 aa20.29■□□□□ 0.84
VPS39-210ENST00000568357 ZNF530Q6P9A1 599 aaPredicted RBP20.28■□□□□ 0.84
VPS39-210ENST00000568357 ZNF827Q17R98 1081 aa20.27■□□□□ 0.84
VPS39-210ENST00000568357 QSER1Q2KHR3 1735 aa20.27■□□□□ 0.83
VPS39-210ENST00000568357 COL3A1P02461 1466 aaPredicted RBP20.26■□□□□ 0.83
VPS39-210ENST00000568357 TUBGCP6Q96RT7 1819 aa20.26■□□□□ 0.83
VPS39-210ENST00000568357 CCNL1Q9UK58 526 aaPredicted RBP20.26■□□□□ 0.83
VPS39-210ENST00000568357 DDX10Q13206 875 aaKnown RBP20.25■□□□□ 0.83
VPS39-210ENST00000568357 KLHL34Q8N239 644 aa20.25■□□□□ 0.83
VPS39-210ENST00000568357 AKT1S1Q96B36 256 aa20.25■□□□□ 0.83
VPS39-210ENST00000568357 DCAF5Q96JK2 942 aa20.25■□□□□ 0.83
VPS39-210ENST00000568357 TMOD3Q9NYL9 352 aa20.25■□□□□ 0.83
VPS39-210ENST00000568357 GOLGB1Q14789 3259 aaKnown RBP20.25■□□□□ 0.83
VPS39-210ENST00000568357 U2SURPO15042 1029 aaKnown RBP20.24■□□□□ 0.83
VPS39-210ENST00000568357 HSP90AB1P08238 724 aaKnown RBP20.24■□□□□ 0.83
VPS39-210ENST00000568357 ZEB1P37275 1124 aaPredicted RBP20.24■□□□□ 0.83
VPS39-210ENST00000568357 PELP1Q8IZL8 1130 aaKnown RBP20.24■□□□□ 0.83
VPS39-210ENST00000568357 TOGARAM1Q9Y4F4 1720 aa20.24■□□□□ 0.83
VPS39-210ENST00000568357 PALLDQ8WX93 1383 aa20.23■□□□□ 0.83
VPS39-210ENST00000568357 ERVV-2B6SEH9 535 aa20.23■□□□□ 0.83
VPS39-210ENST00000568357 ASAP1Q9ULH1 1129 aa20.23■□□□□ 0.83
VPS39-210ENST00000568357 C1orf141Q5JVX7 400 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms