RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-223ENST00000568301 HOXC9P31274 260 aa21.12■□□□□ 0.97
COMMD4-223ENST00000568301 PRIM1P49642 420 aaKnown RBP21.12■□□□□ 0.97
COMMD4-223ENST00000568301 COL24A1Q17RW2 1714 aa21.12■□□□□ 0.97
COMMD4-223ENST00000568301 ANKRD36BQ8N2N9 1353 aa21.11■□□□□ 0.97
COMMD4-223ENST00000568301 TUBGCP6Q96RT7 1819 aa21.11■□□□□ 0.97
COMMD4-223ENST00000568301 SENP3-EIF4A1A0A087X0R7 540 aa21.11■□□□□ 0.97
COMMD4-223ENST00000568301 POLD1P28340 1107 aa21.11■□□□□ 0.97
COMMD4-223ENST00000568301 AMPHP49418 695 aa21.11■□□□□ 0.97
COMMD4-223ENST00000568301 TFCP2L1Q9NZI6 479 aa21.11■□□□□ 0.97
COMMD4-223ENST00000568301 CEP350Q5VT06 3117 aa21.09■□□□□ 0.97
COMMD4-223ENST00000568301 TMF1P82094 1093 aa21.09■□□□□ 0.97
COMMD4-223ENST00000568301 RGPD2P0DJD1 1756 aa21.09■□□□□ 0.97
COMMD4-223ENST00000568301 DOT1LQ8TEK3 1739 aa21.09■□□□□ 0.97
COMMD4-223ENST00000568301 NSD2O96028 1365 aa21.09■□□□□ 0.97
COMMD4-223ENST00000568301 FYB1O15117 783 aa21.08■□□□□ 0.97
COMMD4-223ENST00000568301 PELP1Q8IZL8 1130 aaKnown RBP21.08■□□□□ 0.97
COMMD4-223ENST00000568301 NLGN2Q8NFZ4 835 aa21.08■□□□□ 0.97
COMMD4-223ENST00000568301 LY75O60449 1722 aa21.07■□□□□ 0.96
COMMD4-223ENST00000568301 SHANK3Q9BYB0 1731 aa21.07■□□□□ 0.96
COMMD4-223ENST00000568301 ZCRB1Q8TBF4 217 aaKnown RBP21.07■□□□□ 0.96
COMMD4-223ENST00000568301 RTL1A6NKG5 1358 aa21.06■□□□□ 0.96
COMMD4-223ENST00000568301 TRIM26Q12899 539 aaPredicted RBP21.05■□□□□ 0.96
COMMD4-223ENST00000568301 USP47Q96K76 1375 aa21.05■□□□□ 0.96
COMMD4-223ENST00000568301 MEGF6O75095 1541 aa21.04■□□□□ 0.96
COMMD4-223ENST00000568301 CDCA8Q53HL2 280 aa21.04■□□□□ 0.96
COMMD4-223ENST00000568301 CGNL1Q0VF96 1302 aa21.04■□□□□ 0.96
COMMD4-223ENST00000568301 RRS1Q15050 365 aaKnown RBP21.03■□□□□ 0.96
COMMD4-223ENST00000568301 NBPF6Q5VWK0 638 aa21.03■□□□□ 0.96
COMMD4-223ENST00000568301 NBPF4Q96M43 638 aa21.03■□□□□ 0.96
COMMD4-223ENST00000568301 GGNBP2Q9H3C7 697 aa21.03■□□□□ 0.96
COMMD4-223ENST00000568301 CCNL1Q9UK58 526 aaPredicted RBP21.03■□□□□ 0.96
COMMD4-223ENST00000568301 COL23A1Q86Y22 540 aaPredicted RBP21.02■□□□□ 0.96
COMMD4-223ENST00000568301 MSH5O43196 834 aa21.01■□□□□ 0.95
COMMD4-223ENST00000568301 GIGYF1O75420 1035 aaPredicted RBP21■□□□□ 0.95
COMMD4-223ENST00000568301 YBX3P16989 372 aaKnown RBP eCLIP21■□□□□ 0.95
COMMD4-223ENST00000568301 USHBP1Q8N6Y0 703 aa21■□□□□ 0.95
COMMD4-223ENST00000568301 KIF24Q5T7B8 1368 aa20.99■□□□□ 0.95
COMMD4-223ENST00000568301 RAPGEF4Q8WZA2 1011 aa20.99■□□□□ 0.95
COMMD4-223ENST00000568301 INSRP06213 1382 aa20.98■□□□□ 0.95
COMMD4-223ENST00000568301 SMG6Q86US8 1419 aaKnown RBP20.98■□□□□ 0.95
COMMD4-223ENST00000568301 MSL1Q68DK7 614 aa20.98■□□□□ 0.95
COMMD4-223ENST00000568301 KIF20BQ96Q89 1820 aa20.97■□□□□ 0.95
COMMD4-223ENST00000568301 HSP90AB2PQ58FF8 381 aa20.96■□□□□ 0.95
COMMD4-223ENST00000568301 TIMELESSQ9UNS1 1208 aa20.96■□□□□ 0.95
COMMD4-223ENST00000568301 GRIN3BO60391 1043 aa20.95■□□□□ 0.94
COMMD4-223ENST00000568301 TATP17735 454 aaPredicted RBP20.95■□□□□ 0.94
COMMD4-223ENST00000568301 FLT4P35916 1363 aa20.95■□□□□ 0.94
COMMD4-223ENST00000568301 CARD14Q9BXL6 1004 aa20.94■□□□□ 0.94
COMMD4-223ENST00000568301 C5P01031 1676 aa20.93■□□□□ 0.94
COMMD4-223ENST00000568301 HMGB2P26583 209 aaKnown RBP20.93■□□□□ 0.94
COMMD4-223ENST00000568301 PCDH11XQ9BZA7 1347 aa20.92■□□□□ 0.94
COMMD4-223ENST00000568301 PCDH11YQ9BZA8 1340 aa20.92■□□□□ 0.94
COMMD4-223ENST00000568301 TAF1LQ8IZX4 1826 aa20.9■□□□□ 0.94
COMMD4-223ENST00000568301 MPRIPQ6WCQ1 1025 aa20.9■□□□□ 0.94
COMMD4-223ENST00000568301 PALLDQ8WX93 1383 aa20.89■□□□□ 0.93
COMMD4-223ENST00000568301 CD2APQ9Y5K6 639 aa20.89■□□□□ 0.93
COMMD4-223ENST00000568301 CYP27B1O15528 508 aa20.88■□□□□ 0.93
COMMD4-223ENST00000568301 AMIGO3Q86WK7 504 aa20.88■□□□□ 0.93
COMMD4-223ENST00000568301 NSD3Q9BZ95 1437 aa20.87■□□□□ 0.93
COMMD4-223ENST00000568301 FLAD1Q8NFF5 587 aa20.87■□□□□ 0.93
COMMD4-223ENST00000568301 EMILIN1Q9Y6C2 1016 aa20.87■□□□□ 0.93
COMMD4-223ENST00000568301 ITGB4P16144 1822 aa20.86■□□□□ 0.93
COMMD4-223ENST00000568301 SMIM5Q71RC9 77 aa20.86■□□□□ 0.93
COMMD4-223ENST00000568301 TOGARAM1Q9Y4F4 1720 aa20.86■□□□□ 0.93
COMMD4-223ENST00000568301 ATP10DQ9P241 1426 aa20.86■□□□□ 0.93
COMMD4-223ENST00000568301 MAP2P11137 1827 aaKnown RBP20.85■□□□□ 0.93
COMMD4-223ENST00000568301 WASHC2AQ641Q2 1341 aa20.85■□□□□ 0.93
COMMD4-223ENST00000568301 CLSPNQ9HAW4 1339 aa20.85■□□□□ 0.93
COMMD4-223ENST00000568301 C4BP0C0L5 1744 aa20.85■□□□□ 0.93
COMMD4-223ENST00000568301 NCAPD2Q15021 1401 aa20.85■□□□□ 0.93
COMMD4-223ENST00000568301 PPM1GO15355 546 aaPredicted RBP20.84■□□□□ 0.93
COMMD4-223ENST00000568301 NKX1-1Q15270 411 aaPredicted RBP20.84■□□□□ 0.93
COMMD4-223ENST00000568301 PKD1L3Q7Z443 1732 aa20.84■□□□□ 0.93
COMMD4-223ENST00000568301 ANKRD26Q9UPS8 1709 aa20.84■□□□□ 0.93
COMMD4-223ENST00000568301 SMARCC1Q92922 1105 aaPredicted RBP20.83■□□□□ 0.93
COMMD4-223ENST00000568301 AK7Q96M32 723 aa20.83■□□□□ 0.93
COMMD4-223ENST00000568301 SPG7Q9UQ90 795 aa20.83■□□□□ 0.93
COMMD4-223ENST00000568301 PIGBQ92521 554 aa20.82■□□□□ 0.92
COMMD4-223ENST00000568301 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.82■□□□□ 0.92
COMMD4-223ENST00000568301 PHF14O94880 888 aa20.81■□□□□ 0.92
COMMD4-223ENST00000568301 WWC3Q9ULE0 1092 aa20.81■□□□□ 0.92
COMMD4-223ENST00000568301 UBR3Q6ZT12 1888 aa20.81■□□□□ 0.92
COMMD4-223ENST00000568301 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.8■□□□□ 0.92
COMMD4-223ENST00000568301 EYA1Q99502 592 aa20.8■□□□□ 0.92
COMMD4-223ENST00000568301 GPBP1L1Q9HC44 474 aaPredicted RBP20.8■□□□□ 0.92
COMMD4-223ENST00000568301 IFFO2Q5TF58 517 aa20.79■□□□□ 0.92
COMMD4-223ENST00000568301 ZNF526Q8TF50 670 aaPredicted RBP20.79■□□□□ 0.92
COMMD4-223ENST00000568301 POLKQ9UBT6 870 aa20.79■□□□□ 0.92
COMMD4-223ENST00000568301 ADCY9O60503 1353 aa20.79■□□□□ 0.92
COMMD4-223ENST00000568301 IGSF1Q8N6C5 1336 aa20.78■□□□□ 0.92
COMMD4-223ENST00000568301 LINC00116Q8NCU8 138 aa20.78■□□□□ 0.92
COMMD4-223ENST00000568301 LOC102724428A0A0B4J2F2 783 aa20.77■□□□□ 0.92
COMMD4-223ENST00000568301 SIK1P57059 783 aa20.77■□□□□ 0.92
COMMD4-223ENST00000568301 SSFA2P28290 1259 aa20.75■□□□□ 0.91
COMMD4-223ENST00000568301 PCGF6Q9BYE7 350 aa20.75■□□□□ 0.91
COMMD4-223ENST00000568301 ASAP1Q9ULH1 1129 aa20.75■□□□□ 0.91
COMMD4-223ENST00000568301 ITPK1Q13572 414 aa20.74■□□□□ 0.91
COMMD4-223ENST00000568301 IFNL2Q8IZJ0 200 aa20.74■□□□□ 0.91
COMMD4-223ENST00000568301 PLEKHG2Q9H7P9 1386 aa20.73■□□□□ 0.91
COMMD4-223ENST00000568301 TMOD3Q9NYL9 352 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 312.8 ms