RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MEN1O00255 615 aa6.45□□□□□ -1.38
VPS35-207ENST00000568191 GTF2E1P29083 439 aaPredicted RBP6.45□□□□□ -1.38
VPS35-207ENST00000568191 GPC1P35052 558 aa6.45□□□□□ -1.38
VPS35-207ENST00000568191 GMPRP36959 345 aa6.45□□□□□ -1.38
VPS35-207ENST00000568191 FLIIQ13045 1269 aa6.45□□□□□ -1.38
VPS35-207ENST00000568191 SEMA3FQ13275 785 aa6.45□□□□□ -1.38
VPS35-207ENST00000568191 GDPD2Q9HCC8 539 aa6.45□□□□□ -1.38
VPS35-207ENST00000568191 VSIG8P0DPA2 414 aa6.44□□□□□ -1.38
VPS35-207ENST00000568191 RNF144AP50876 292 aaPredicted RBP6.44□□□□□ -1.38
VPS35-207ENST00000568191 USP4Q13107 963 aa6.44□□□□□ -1.38
VPS35-207ENST00000568191 SLC27A3Q5K4L6 730 aa6.44□□□□□ -1.38
VPS35-207ENST00000568191 CCDC155Q8N6L0 562 aa6.44□□□□□ -1.38
VPS35-207ENST00000568191 RNF217Q8TC41 542 aa6.44□□□□□ -1.38
VPS35-207ENST00000568191 A0A1W2PRU2 124 aa6.43□□□□□ -1.38
VPS35-207ENST00000568191 RNF135Q8IUD6 432 aa6.43□□□□□ -1.38
VPS35-207ENST00000568191 GNRH1P01148 92 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 MCM6Q14566 821 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 ESCO1Q5FWF5 840 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 FOXR1Q6PIV2 292 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 SV2AQ7L0J3 742 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 ZSCAN1Q8NBB4 408 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 DOLKQ9UPQ8 538 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 ERBB4Q15303 1308 aa6.42□□□□□ -1.38
VPS35-207ENST00000568191 SLC35F4A4IF30 521 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 GPR37L1O60883 481 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 ITGA6P23229 1130 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 VAC14Q08AM6 782 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 CLN3Q13286 438 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 MAP7D1Q3KQU3 841 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 PRICKLE2Q7Z3G6 844 aa6.41□□□□□ -1.38
VPS35-207ENST00000568191 CDC14CA4D256 554 aa6.4□□□□□ -1.38
VPS35-207ENST00000568191 UBTFP17480 764 aaKnown RBP6.4□□□□□ -1.38
VPS35-207ENST00000568191 IRF5Q13568 498 aa6.4□□□□□ -1.38
VPS35-207ENST00000568191 TMEM132AQ24JP5 1023 aa6.4□□□□□ -1.38
VPS35-207ENST00000568191 FOXD4L5Q5VV16 416 aaPredicted RBP6.4□□□□□ -1.38
VPS35-207ENST00000568191 NANOS1Q8WY41 292 aaKnown RBP6.4□□□□□ -1.38
VPS35-207ENST00000568191 GMCL1Q96IK5 515 aa6.4□□□□□ -1.38
VPS35-207ENST00000568191 H7C1W4 665 aa6.39□□□□□ -1.39
VPS35-207ENST00000568191 TRAK2O60296 914 aa6.39□□□□□ -1.39
VPS35-207ENST00000568191 KDF1Q8NAX2 398 aaPredicted RBP6.39□□□□□ -1.39
VPS35-207ENST00000568191 OSBPL3Q9H4L5 887 aa6.39□□□□□ -1.39
VPS35-207ENST00000568191 ARHGEF10LQ9HCE6 1279 aa6.39□□□□□ -1.39
VPS35-207ENST00000568191 SCTRP47872 440 aa6.38□□□□□ -1.39
VPS35-207ENST00000568191 OXLD1Q5BKU9 147 aa6.38□□□□□ -1.39
VPS35-207ENST00000568191 WDR44Q5JSH3 913 aa6.38□□□□□ -1.39
VPS35-207ENST00000568191 VWA5B2Q8N398 1253 aa6.38□□□□□ -1.39
VPS35-207ENST00000568191 CNKSR1Q969H4 720 aa6.38□□□□□ -1.39
VPS35-207ENST00000568191 CCDC85AQ96PX6 553 aaPredicted RBP6.38□□□□□ -1.39
VPS35-207ENST00000568191 GNASQ5JWF2 1037 aa6.37□□□□□ -1.39
VPS35-207ENST00000568191 TMEM214Q6NUQ4 689 aaKnown RBP6.37□□□□□ -1.39
VPS35-207ENST00000568191 RIPOR1Q6ZS17 1223 aa6.37□□□□□ -1.39
VPS35-207ENST00000568191 TAS1R3Q7RTX0 852 aa6.37□□□□□ -1.39
VPS35-207ENST00000568191 ESYT1Q9BSJ8 1104 aa6.37□□□□□ -1.39
VPS35-207ENST00000568191 COG6Q9Y2V7 657 aa6.37□□□□□ -1.39
VPS35-207ENST00000568191 DYRK1BQ9Y463 629 aa6.37□□□□□ -1.39
VPS35-207ENST00000568191 LZTS3O60299 673 aaPredicted RBP6.36□□□□□ -1.39
VPS35-207ENST00000568191 RHOQP17081 205 aa6.36□□□□□ -1.39
VPS35-207ENST00000568191 POU4F2Q12837 409 aa6.36□□□□□ -1.39
VPS35-207ENST00000568191 LCE2CQ5TA81 110 aa6.36□□□□□ -1.39
VPS35-207ENST00000568191 PHTF2Q8N3S3 785 aa6.36□□□□□ -1.39
VPS35-207ENST00000568191 ZSCAN10Q96SZ4 725 aaPredicted RBP6.36□□□□□ -1.39
VPS35-207ENST00000568191 CDCA7Q9BWT1 371 aaPredicted RBP6.36□□□□□ -1.39
VPS35-207ENST00000568191 GRIP2Q9C0E4 1043 aa6.36□□□□□ -1.39
VPS35-207ENST00000568191 TIMMDC1Q9NPL8 285 aa6.36□□□□□ -1.39
VPS35-207ENST00000568191 SPATA31C2B4DYI2 1134 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 CENPCQ03188 943 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 NBPF10Q6P3W6 841 aaKnown RBP6.35□□□□□ -1.39
VPS35-207ENST00000568191 NBPF15Q8N660 670 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 PLPP7Q8NBV4 271 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 CNTNAP3BQ96NU0 1288 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 TRERF1Q96PN7 1200 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 GAS2L1Q99501 681 aaPredicted RBP6.35□□□□□ -1.39
VPS35-207ENST00000568191 COL25A1Q9BXS0 654 aaPredicted RBP6.35□□□□□ -1.39
VPS35-207ENST00000568191 CNTNAP3Q9BZ76 1288 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 RAB6BQ9NRW1 208 aa6.35□□□□□ -1.39
VPS35-207ENST00000568191 WASLO00401 505 aaPredicted RBP6.34□□□□□ -1.39
VPS35-207ENST00000568191 TRIM22Q8IYM9 498 aa6.34□□□□□ -1.39
VPS35-207ENST00000568191 XAGE2Q96GT9 111 aa6.34□□□□□ -1.39
VPS35-207ENST00000568191 SENP3-EIF4A1A0A087X0R7 540 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 F11P03951 625 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 CSB-PGBD3P0DP91 1061 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 EML3Q32P44 896 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 PGBD3Q8N328 593 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 NFATC2IPQ8NCF5 419 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 CHIC2Q9UKJ5 165 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 NSFL1CQ9UNZ2 370 aaKnown RBP6.33□□□□□ -1.4
VPS35-207ENST00000568191 NOD1Q9Y239 953 aa6.33□□□□□ -1.4
VPS35-207ENST00000568191 A0A1B0GTH6 734 aa6.32□□□□□ -1.4
VPS35-207ENST00000568191 SKIP12755 728 aa6.32□□□□□ -1.4
VPS35-207ENST00000568191 GPR161Q8N6U8 529 aaKnown RBP6.32□□□□□ -1.4
VPS35-207ENST00000568191 BACH1O14867 736 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 IL2RAP01589 272 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 TLR1Q15399 786 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 TSGA10IPQ3SY00 556 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 RHBDD1Q8TEB9 315 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 ALG2Q9H553 416 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 PHF24Q9UPV7 400 aa6.31□□□□□ -1.4
VPS35-207ENST00000568191 GDF10P55107 478 aa6.3□□□□□ -1.4
VPS35-207ENST00000568191 MAP3K10Q02779 954 aa6.3□□□□□ -1.4
VPS35-207ENST00000568191 PSME1Q06323 249 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms