RNA–Protein interactions for RNA: ENST00000568108.1

PTPN9-205, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 2

Gene PTPN9, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-205ENST00000568108 NHSQ6T4R5 1651 aa8.94□□□□□ -0.98
PTPN9-205ENST00000568108 POLD1P28340 1107 aa8.93□□□□□ -0.98
PTPN9-205ENST00000568108 PRIM1P49642 420 aaKnown RBP8.93□□□□□ -0.98
PTPN9-205ENST00000568108 KLHL34Q8N239 644 aa8.93□□□□□ -0.98
PTPN9-205ENST00000568108 SYTL4Q96C24 671 aaPredicted RBP8.93□□□□□ -0.98
PTPN9-205ENST00000568108 PUS7Q96PZ0 661 aaKnown RBP8.93□□□□□ -0.98
PTPN9-205ENST00000568108 TFCP2L1Q9NZI6 479 aa8.93□□□□□ -0.98
PTPN9-205ENST00000568108 EDC4Q6P2E9 1401 aaKnown RBP8.93□□□□□ -0.98
PTPN9-205ENST00000568108 MON2Q7Z3U7 1717 aa8.93□□□□□ -0.98
PTPN9-205ENST00000568108 A0A1W2PP64 1363 aa8.92□□□□□ -0.98
PTPN9-205ENST00000568108 MAP3K5Q99683 1374 aa8.92□□□□□ -0.98
PTPN9-205ENST00000568108 KCNQ4P56696 695 aa8.92□□□□□ -0.98
PTPN9-205ENST00000568108 ZCRB1Q8TBF4 217 aaKnown RBP8.92□□□□□ -0.98
PTPN9-205ENST00000568108 COG3Q96JB2 828 aa8.92□□□□□ -0.98
PTPN9-205ENST00000568108 BTAF1O14981 1849 aa8.91□□□□□ -0.98
PTPN9-205ENST00000568108 PNPLA7Q6ZV29 1317 aa8.91□□□□□ -0.98
PTPN9-205ENST00000568108 FBLN1P23142 703 aa8.91□□□□□ -0.98
PTPN9-205ENST00000568108 AMPHP49418 695 aa8.91□□□□□ -0.98
PTPN9-205ENST00000568108 PELP1Q8IZL8 1130 aaKnown RBP8.91□□□□□ -0.98
PTPN9-205ENST00000568108 LTN1O94822 1766 aa8.91□□□□□ -0.98
PTPN9-205ENST00000568108 USP54Q70EL1 1684 aa8.91□□□□□ -0.98
PTPN9-205ENST00000568108 MAP3K19Q56UN5 1328 aa8.9□□□□□ -0.98
PTPN9-205ENST00000568108 HOXC9P31274 260 aa8.9□□□□□ -0.98
PTPN9-205ENST00000568108 C1QTNF8P60827 252 aa8.9□□□□□ -0.98
PTPN9-205ENST00000568108 PAPPAQ13219 1627 aa8.9□□□□□ -0.99
PTPN9-205ENST00000568108 UTRNP46939 3433 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 ANKRD36BQ8N2N9 1353 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 TONSLQ96HA7 1378 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 SENP3-EIF4A1A0A087X0R7 540 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 ST20-MTHFSA0A0A6YYL1 179 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 TESK2Q96S53 571 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 CCNL1Q9UK58 526 aaPredicted RBP8.89□□□□□ -0.99
PTPN9-205ENST00000568108 CHD4Q14839 1912 aa8.89□□□□□ -0.99
PTPN9-205ENST00000568108 NBPF6Q5VWK0 638 aa8.88□□□□□ -0.99
PTPN9-205ENST00000568108 NLGN2Q8NFZ4 835 aa8.88□□□□□ -0.99
PTPN9-205ENST00000568108 NBPF4Q96M43 638 aa8.88□□□□□ -0.99
PTPN9-205ENST00000568108 RRS1Q15050 365 aaKnown RBP8.87□□□□□ -0.99
PTPN9-205ENST00000568108 COL23A1Q86Y22 540 aaPredicted RBP8.87□□□□□ -0.99
PTPN9-205ENST00000568108 RAPGEF4Q8WZA2 1011 aa8.87□□□□□ -0.99
PTPN9-205ENST00000568108 ZNF219Q9P2Y4 722 aaPredicted RBP8.87□□□□□ -0.99
PTPN9-205ENST00000568108 NSD2O96028 1365 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 USP47Q96K76 1375 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 CGNL1Q0VF96 1302 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 FYB1O15117 783 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 GRIN3BO60391 1043 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 GIGYF1O75420 1035 aaPredicted RBP8.86□□□□□ -0.99
PTPN9-205ENST00000568108 USHBP1Q8N6Y0 703 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 GGNBP2Q9H3C7 697 aa8.86□□□□□ -0.99
PTPN9-205ENST00000568108 ZNF316A6NFI3 1004 aaPredicted RBP8.85□□□□□ -0.99
PTPN9-205ENST00000568108 YBX3P16989 372 aaKnown RBP eCLIP8.85□□□□□ -0.99
PTPN9-205ENST00000568108 TATP17735 454 aaPredicted RBP8.85□□□□□ -0.99
PTPN9-205ENST00000568108 HMGB2P26583 209 aaKnown RBP8.85□□□□□ -0.99
PTPN9-205ENST00000568108 MSL1Q68DK7 614 aa8.85□□□□□ -0.99
PTPN9-205ENST00000568108 MEGF6O75095 1541 aa8.85□□□□□ -0.99
PTPN9-205ENST00000568108 FAM208AQ9UK61 1670 aaKnown RBP8.85□□□□□ -0.99
PTPN9-205ENST00000568108 QSER1Q2KHR3 1735 aa8.84□□□□□ -0.99
PTPN9-205ENST00000568108 HSP90AB2PQ58FF8 381 aa8.84□□□□□ -0.99
PTPN9-205ENST00000568108 MPRIPQ6WCQ1 1025 aa8.84□□□□□ -0.99
PTPN9-205ENST00000568108 RTL1A6NKG5 1358 aa8.84□□□□□ -0.99
PTPN9-205ENST00000568108 SMG6Q86US8 1419 aaKnown RBP8.83□□□□□ -1
PTPN9-205ENST00000568108 TMF1P82094 1093 aa8.83□□□□□ -1
PTPN9-205ENST00000568108 FLAD1Q8NFF5 587 aa8.83□□□□□ -1
PTPN9-205ENST00000568108 LY75O60449 1722 aa8.83□□□□□ -1
PTPN9-205ENST00000568108 COL24A1Q17RW2 1714 aa8.83□□□□□ -1
PTPN9-205ENST00000568108 DOT1LQ8TEK3 1739 aa8.83□□□□□ -1
PTPN9-205ENST00000568108 PCDH11XQ9BZA7 1347 aa8.82□□□□□ -1
PTPN9-205ENST00000568108 PCDH11YQ9BZA8 1340 aa8.82□□□□□ -1
PTPN9-205ENST00000568108 RGPD2P0DJD1 1756 aa8.82□□□□□ -1
PTPN9-205ENST00000568108 DIEXFQ68CQ4 756 aaKnown RBP8.82□□□□□ -1
PTPN9-205ENST00000568108 SMARCC1Q92922 1105 aaPredicted RBP8.82□□□□□ -1
PTPN9-205ENST00000568108 CD2APQ9Y5K6 639 aa8.82□□□□□ -1
PTPN9-205ENST00000568108 INSRP06213 1382 aa8.82□□□□□ -1
PTPN9-205ENST00000568108 PALLDQ8WX93 1383 aa8.82□□□□□ -1
PTPN9-205ENST00000568108 CYP27B1O15528 508 aa8.81□□□□□ -1
PTPN9-205ENST00000568108 FBXO3Q9UK99 471 aa8.81□□□□□ -1
PTPN9-205ENST00000568108 TUBGCP6Q96RT7 1819 aa8.81□□□□□ -1
PTPN9-205ENST00000568108 SHANK3Q9BYB0 1731 aa8.8□□□□□ -1
PTPN9-205ENST00000568108 CDCA8Q53HL2 280 aa8.8□□□□□ -1
PTPN9-205ENST00000568108 PIGBQ92521 554 aa8.8□□□□□ -1
PTPN9-205ENST00000568108 AK7Q96M32 723 aa8.8□□□□□ -1
PTPN9-205ENST00000568108 FLT4P35916 1363 aa8.8□□□□□ -1
PTPN9-205ENST00000568108 KIF24Q5T7B8 1368 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.79□□□□□ -1
PTPN9-205ENST00000568108 PPM1GO15355 546 aaPredicted RBP8.79□□□□□ -1
PTPN9-205ENST00000568108 PHF14O94880 888 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 SMIM5Q71RC9 77 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 CARD14Q9BXL6 1004 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 GPBP1L1Q9HC44 474 aaPredicted RBP8.79□□□□□ -1
PTPN9-205ENST00000568108 TIMELESSQ9UNS1 1208 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 SPG7Q9UQ90 795 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 EMILIN1Q9Y6C2 1016 aa8.79□□□□□ -1
PTPN9-205ENST00000568108 LOC102724428A0A0B4J2F2 783 aa8.78□□□□□ -1
PTPN9-205ENST00000568108 SIK1P57059 783 aa8.78□□□□□ -1
PTPN9-205ENST00000568108 NKX1-1Q15270 411 aaPredicted RBP8.78□□□□□ -1
PTPN9-205ENST00000568108 AMIGO3Q86WK7 504 aa8.78□□□□□ -1
PTPN9-205ENST00000568108 ATP10DQ9P241 1426 aa8.78□□□□□ -1
PTPN9-205ENST00000568108 ZNF526Q8TF50 670 aaPredicted RBP8.77□□□□□ -1.01
PTPN9-205ENST00000568108 EYA1Q99502 592 aa8.77□□□□□ -1.01
PTPN9-205ENST00000568108 TMOD3Q9NYL9 352 aa8.77□□□□□ -1.01
PTPN9-205ENST00000568108 WWC3Q9ULE0 1092 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms