RNA–Protein interactions for RNA: ENST00000567944.1

HERPUD1-212, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 435 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-212ENST00000567944 DOLKQ9UPQ8 538 aa7.86□□□□□ -1.15
HERPUD1-212ENST00000567944 USP17L3A6NCW0 530 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 USP17L4A6NCW7 530 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 WIPF1O43516 503 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 INSM1Q01101 510 aaPredicted RBP7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 NCOA4Q13772 614 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 LCE2CQ5TA81 110 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 USP17L2Q6R6M4 530 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 USP17L1Q7RTZ2 530 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 OSBPL3Q9H4L5 887 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 SERPINA10Q9UK55 444 aa7.85□□□□□ -1.15
HERPUD1-212ENST00000567944 KANK4Q5T7N3 995 aaPredicted RBP7.84□□□□□ -1.15
HERPUD1-212ENST00000567944 PGPEP1Q9NXJ5 209 aa7.84□□□□□ -1.15
HERPUD1-212ENST00000567944 CAPN5O15484 640 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-212ENST00000567944 LMOD1P29536 600 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-212ENST00000567944 OXLD1Q5BKU9 147 aa7.83□□□□□ -1.16
HERPUD1-212ENST00000567944 CC2D2BQ6DHV5 1058 aa7.83□□□□□ -1.16
HERPUD1-212ENST00000567944 LZTS3O60299 673 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-212ENST00000567944 CTC1Q2NKJ3 1217 aa7.82□□□□□ -1.16
HERPUD1-212ENST00000567944 MEIOBQ8N635 442 aa7.82□□□□□ -1.16
HERPUD1-212ENST00000567944 CCDC97Q96F63 343 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-212ENST00000567944 PCDHGA11Q9Y5H2 935 aa7.82□□□□□ -1.16
HERPUD1-212ENST00000567944 USP4Q13107 963 aa7.81□□□□□ -1.16
HERPUD1-212ENST00000567944 TRIM46Q7Z4K8 759 aa7.81□□□□□ -1.16
HERPUD1-212ENST00000567944 AGBL1Q96MI9 1066 aa7.81□□□□□ -1.16
HERPUD1-212ENST00000567944 ZBTB7BO15156 539 aaPredicted RBP7.8□□□□□ -1.16
HERPUD1-212ENST00000567944 DKK1O94907 266 aa7.8□□□□□ -1.16
HERPUD1-212ENST00000567944 STAU1O95793 577 aaKnown RBP7.8□□□□□ -1.16
HERPUD1-212ENST00000567944 ADH1AP07327 375 aa7.8□□□□□ -1.16
HERPUD1-212ENST00000567944 CLDN10P78369 228 aa7.8□□□□□ -1.16
HERPUD1-212ENST00000567944 EML3Q32P44 896 aa7.8□□□□□ -1.16
HERPUD1-212ENST00000567944 BMP1P13497 986 aa7.79□□□□□ -1.16
HERPUD1-212ENST00000567944 RFX1P22670 979 aa7.79□□□□□ -1.16
HERPUD1-212ENST00000567944 MKRN1Q9UHC7 482 aaKnown RBP7.79□□□□□ -1.16
HERPUD1-212ENST00000567944 KIAA1024Q9UPX6 916 aa7.79□□□□□ -1.16
HERPUD1-212ENST00000567944 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.78□□□□□ -1.16
HERPUD1-212ENST00000567944 SNRPBP14678 240 aaKnown RBP7.78□□□□□ -1.16
HERPUD1-212ENST00000567944 ARID3AQ99856 593 aa7.78□□□□□ -1.16
HERPUD1-212ENST00000567944 NOD1Q9Y239 953 aa7.78□□□□□ -1.16
HERPUD1-212ENST00000567944 TERTO14746 1132 aaKnown RBP7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 MYCP01106 439 aaPredicted RBP7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 PTGIRP43119 386 aa7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 SCNN1DP51172 638 aa7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 GTF2IP78347 998 aa7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 CRTC2Q53ET0 693 aaPredicted RBP7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 CDCA8Q53HL2 280 aa7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 MRPL14Q6P1L8 145 aaKnown RBP7.77□□□□□ -1.17
HERPUD1-212ENST00000567944 LOC100996750A0A140TA64 210 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 ATP5J2-PTCD1G3V325 749 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 RELBQ01201 579 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 LINC00528Q8N1L1 170 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 SIRT1Q96EB6 747 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 KRTAP4-6Q9BYQ5 205 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 ZNF395Q9H8N7 513 aaPredicted RBP7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 ATP13A2Q9NQ11 1180 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 HRH3Q9Y5N1 445 aa7.76□□□□□ -1.17
HERPUD1-212ENST00000567944 A0A1W2PRU2 124 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 TMEM229AB2RXF0 380 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 IL2RAP01589 272 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 PTK7Q13308 1070 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 CYP2U1Q7Z449 544 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 OGFOD1Q8N543 542 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 TSEN34Q9BSV6 310 aaKnown RBP7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 VRTNQ9H8Y1 702 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 ETNK1Q9HBU6 452 aa7.75□□□□□ -1.17
HERPUD1-212ENST00000567944 SPINT1O43278 529 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 GNRH1P01148 92 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 PBXIP1Q96AQ6 731 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 ZFP42Q96MM3 310 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 PURBQ96QR8 312 aaKnown RBP7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 ARXQ96QS3 562 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 ARHGEF10LQ9HCE6 1279 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 RAB6BQ9NRW1 208 aa7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 DNAAF2Q9NVR5 837 aaKnown RBP7.74□□□□□ -1.17
HERPUD1-212ENST00000567944 FAM196BA6NMK8 535 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 RASA1P20936 1047 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 TRIM50Q86XT4 487 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 SIX5Q8N196 739 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 LARGE2Q8N3Y3 721 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 TRIM52Q96A61 297 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 XAGE2Q96GT9 111 aa7.73□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L15C9J2P7 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L10C9JJH3 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L13C9JLJ4 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L12C9JPN9 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L11C9JVI0 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L21D6R901 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L18D6R9N7 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L22D6RA61 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L17D6RBQ6 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L19D6RCP7 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L20D6RJB6 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 WASLO00401 505 aaPredicted RBP7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 CTSOP43234 321 aaPredicted RBP7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 USP17L24Q0WX57 530 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 CLN3Q13286 438 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 C6orf118Q5T5N4 469 aa7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 ZNF594Q96JF6 807 aaPredicted RBP7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 INSM2Q96T92 566 aaPredicted RBP7.72□□□□□ -1.17
HERPUD1-212ENST00000567944 ATG7O95352 703 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms