RNA–Protein interactions for RNA: ENST00000567909.1

GINS3-209, Transcript of GINS complex subunit 3, humanhuman

TSL 3

Gene GINS3, Length 210 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-209ENST00000567909 NCAPD2Q15021 1401 aa17.15■□□□□ 0.34
GINS3-209ENST00000567909 DIAPH1O60610 1272 aaKnown RBP17.15■□□□□ 0.34
GINS3-209ENST00000567909 CCDC125Q86Z20 511 aa17.15■□□□□ 0.34
GINS3-209ENST00000567909 TNS1Q9HBL0 1735 aaKnown RBP17.14■□□□□ 0.33
GINS3-209ENST00000567909 CFAP53Q96M91 514 aa17.14■□□□□ 0.33
GINS3-209ENST00000567909 PKD1L3Q7Z443 1732 aa17.13■□□□□ 0.33
GINS3-209ENST00000567909 COL3A1P02461 1466 aaPredicted RBP17.13■□□□□ 0.33
GINS3-209ENST00000567909 AEBP1Q8IUX7 1158 aa17.13■□□□□ 0.33
GINS3-209ENST00000567909 SULT6B1Q6IMI4 303 aa17.12■□□□□ 0.33
GINS3-209ENST00000567909 U2SURPO15042 1029 aaKnown RBP17.11■□□□□ 0.33
GINS3-209ENST00000567909 RALBP1Q15311 655 aa17.11■□□□□ 0.33
GINS3-209ENST00000567909 DEFB132Q7Z7B7 95 aa17.11■□□□□ 0.33
GINS3-209ENST00000567909 HMOX1P09601 288 aa17.1■□□□□ 0.33
GINS3-209ENST00000567909 ACSBG1Q96GR2 724 aa17.1■□□□□ 0.33
GINS3-209ENST00000567909 SPG7Q9UQ90 795 aa17.1■□□□□ 0.33
GINS3-209ENST00000567909 PCDH11XQ9BZA7 1347 aa17.09■□□□□ 0.33
GINS3-209ENST00000567909 PCDH11YQ9BZA8 1340 aa17.09■□□□□ 0.33
GINS3-209ENST00000567909 DOT1LQ8TEK3 1739 aa17.09■□□□□ 0.33
GINS3-209ENST00000567909 NHSQ6T4R5 1651 aa17.08■□□□□ 0.32
GINS3-209ENST00000567909 BCL9O00512 1426 aa17.08■□□□□ 0.32
GINS3-209ENST00000567909 APBA3O96018 575 aa17.08■□□□□ 0.32
GINS3-209ENST00000567909 BAG6P46379 1132 aa17.08■□□□□ 0.32
GINS3-209ENST00000567909 PTF1AQ7RTS3 328 aa17.08■□□□□ 0.32
GINS3-209ENST00000567909 KDRP35968 1356 aa17.07■□□□□ 0.32
GINS3-209ENST00000567909 CYP27B1O15528 508 aa17.07■□□□□ 0.32
GINS3-209ENST00000567909 KCNQ2O43526 872 aa17.07■□□□□ 0.32
GINS3-209ENST00000567909 EN1Q05925 392 aaPredicted RBP17.06■□□□□ 0.32
GINS3-209ENST00000567909 PLEKHO1Q53GL0 409 aaPredicted RBP17.06■□□□□ 0.32
GINS3-209ENST00000567909 BCL11BQ9C0K0 894 aaPredicted RBP17.06■□□□□ 0.32
GINS3-209ENST00000567909 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.06■□□□□ 0.32
GINS3-209ENST00000567909 NUDCQ9Y266 331 aa17.06■□□□□ 0.32
GINS3-209ENST00000567909 BTAF1O14981 1849 aa17.05■□□□□ 0.32
GINS3-209ENST00000567909 MYBBP1AQ9BQG0 1328 aaKnown RBP17.05■□□□□ 0.32
GINS3-209ENST00000567909 SYTL4Q96C24 671 aaPredicted RBP17.05■□□□□ 0.32
GINS3-209ENST00000567909 PRKRIP1Q9H875 184 aaPredicted RBP17.05■□□□□ 0.32
GINS3-209ENST00000567909 ZNF530Q6P9A1 599 aaPredicted RBP17.04■□□□□ 0.32
GINS3-209ENST00000567909 ITGB4P16144 1822 aa17.03■□□□□ 0.32
GINS3-209ENST00000567909 U2AF1L5P0DN76 240 aaPredicted RBP17.03■□□□□ 0.32
GINS3-209ENST00000567909 PRIM1P49642 420 aaKnown RBP17.03■□□□□ 0.32
GINS3-209ENST00000567909 U2AF1Q01081 240 aaKnown RBP eCLIP17.03■□□□□ 0.32
GINS3-209ENST00000567909 AMOTQ4VCS5 1084 aa17.03■□□□□ 0.32
GINS3-209ENST00000567909 IFNL2Q8IZJ0 200 aa17.03■□□□□ 0.32
GINS3-209ENST00000567909 PLEKHG2Q9H7P9 1386 aa17.02■□□□□ 0.32
GINS3-209ENST00000567909 TOGARAM1Q9Y4F4 1720 aa17.02■□□□□ 0.32
GINS3-209ENST00000567909 PHKG2P15735 406 aa17.02■□□□□ 0.32
GINS3-209ENST00000567909 EZH2Q15910 746 aaKnown RBP17.02■□□□□ 0.32
GINS3-209ENST00000567909 VIRMAQ69YN4 1812 aaKnown RBP17.01■□□□□ 0.31
GINS3-209ENST00000567909 C1orf141Q5JVX7 400 aa17■□□□□ 0.31
GINS3-209ENST00000567909 CAMKK2Q96RR4 588 aa17■□□□□ 0.31
GINS3-209ENST00000567909 RGPD3A6NKT7 1758 aaPredicted RBP17■□□□□ 0.31
GINS3-209ENST00000567909 RGPD4Q7Z3J3 1758 aa17■□□□□ 0.31
GINS3-209ENST00000567909 PRKAR2BP31323 418 aa16.99■□□□□ 0.31
GINS3-209ENST00000567909 NKX1-1Q15270 411 aaPredicted RBP16.99■□□□□ 0.31
GINS3-209ENST00000567909 RSPH6AQ9H0K4 717 aa16.99■□□□□ 0.31
GINS3-209ENST00000567909 RREB1Q92766 1687 aa16.98■□□□□ 0.31
GINS3-209ENST00000567909 PLSCR1O15162 318 aa16.97■□□□□ 0.31
GINS3-209ENST00000567909 ANP32CO43423 234 aa16.97■□□□□ 0.31
GINS3-209ENST00000567909 HSP90AB1P08238 724 aaKnown RBP16.97■□□□□ 0.31
GINS3-209ENST00000567909 MTHFSDQ2M296 383 aaKnown RBP16.97■□□□□ 0.31
GINS3-209ENST00000567909 MPRIPQ6WCQ1 1025 aa16.97■□□□□ 0.31
GINS3-209ENST00000567909 SCN11AQ9UI33 1791 aa16.97■□□□□ 0.31
GINS3-209ENST00000567909 NUP188Q5SRE5 1749 aa16.96■□□□□ 0.31
GINS3-209ENST00000567909 FCHSD2O94868 740 aa16.95■□□□□ 0.3
GINS3-209ENST00000567909 AKAP4Q5JQC9 854 aa16.95■□□□□ 0.3
GINS3-209ENST00000567909 DCAF5Q96JK2 942 aa16.95■□□□□ 0.3
GINS3-209ENST00000567909 KDM6AO15550 1401 aaPredicted RBP16.95■□□□□ 0.3
GINS3-209ENST00000567909 PHACTR3Q96KR7 559 aa16.94■□□□□ 0.3
GINS3-209ENST00000567909 TMOD3Q9NYL9 352 aa16.94■□□□□ 0.3
GINS3-209ENST00000567909 TXNRD1Q16881 649 aa16.93■□□□□ 0.3
GINS3-209ENST00000567909 GAS2L2Q8NHY3 880 aa16.93■□□□□ 0.3
GINS3-209ENST00000567909 NEFMP07197 916 aa16.92■□□□□ 0.3
GINS3-209ENST00000567909 WDR43Q15061 677 aaKnown RBP eCLIP16.92■□□□□ 0.3
GINS3-209ENST00000567909 PROM2Q8N271 834 aa16.92■□□□□ 0.3
GINS3-209ENST00000567909 PIGBQ92521 554 aa16.92■□□□□ 0.3
GINS3-209ENST00000567909 LY75O60449 1722 aa16.92■□□□□ 0.3
GINS3-209ENST00000567909 ERVV-2B6SEH9 535 aa16.91■□□□□ 0.3
GINS3-209ENST00000567909 CABP4P57796 275 aa16.91■□□□□ 0.3
GINS3-209ENST00000567909 DLG5Q8TDM6 1919 aa16.91■□□□□ 0.3
GINS3-209ENST00000567909 LGR6Q9HBX8 967 aa16.9■□□□□ 0.3
GINS3-209ENST00000567909 MAP3K5Q99683 1374 aa16.89■□□□□ 0.3
GINS3-209ENST00000567909 GNAT3A8MTJ3 354 aa16.89■□□□□ 0.29
GINS3-209ENST00000567909 RNMTO43148 476 aaKnown RBP16.89■□□□□ 0.29
GINS3-209ENST00000567909 PNNQ9H307 717 aaKnown RBP16.89■□□□□ 0.29
GINS3-209ENST00000567909 MAPK8IP3Q9UPT6 1336 aa16.89■□□□□ 0.29
GINS3-209ENST00000567909 PSDA5PKW4 1024 aaPredicted RBP16.88■□□□□ 0.29
GINS3-209ENST00000567909 KCNQ4P56696 695 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 CCDC184Q52MB2 194 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 NBPF14Q5TI25 921 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 NFATC2IPQ8NCF5 419 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 SMARCC1Q92922 1105 aaPredicted RBP16.88■□□□□ 0.29
GINS3-209ENST00000567909 ASAP1Q9ULH1 1129 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 PALLDQ8WX93 1383 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 ADAMTS7Q9UKP4 1686 aa16.88■□□□□ 0.29
GINS3-209ENST00000567909 PLEKHF1Q96S99 279 aa16.87■□□□□ 0.29
GINS3-209ENST00000567909 LRRC4BQ9NT99 713 aa16.87■□□□□ 0.29
GINS3-209ENST00000567909 CCNL1Q9UK58 526 aaPredicted RBP16.87■□□□□ 0.29
GINS3-209ENST00000567909 R3HDM1Q15032 1099 aaKnown RBP16.86■□□□□ 0.29
GINS3-209ENST00000567909 CCDC146Q8IYE0 955 aa16.86■□□□□ 0.29
GINS3-209ENST00000567909 SLC52A2Q9HAB3 445 aa16.86■□□□□ 0.29
GINS3-209ENST00000567909 MRS2Q9HD23 443 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms