RNA–Protein interactions for RNA: ENST00000567720.5

COMMD4-220, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-220ENST00000567720 BCL9O00512 1426 aa23.27■■□□□ 1.32
COMMD4-220ENST00000567720 RGPD3A6NKT7 1758 aaPredicted RBP23.26■■□□□ 1.31
COMMD4-220ENST00000567720 RGPD4Q7Z3J3 1758 aa23.26■■□□□ 1.31
COMMD4-220ENST00000567720 BTAF1O14981 1849 aa23.25■■□□□ 1.31
COMMD4-220ENST00000567720 EXOC5O00471 708 aa23.25■■□□□ 1.31
COMMD4-220ENST00000567720 RAPGEF4Q8WZA2 1011 aa23.25■■□□□ 1.31
COMMD4-220ENST00000567720 AEBP1Q8IUX7 1158 aa23.24■■□□□ 1.31
COMMD4-220ENST00000567720 PLEKHG2Q9H7P9 1386 aa23.24■■□□□ 1.31
COMMD4-220ENST00000567720 KAT6BQ8WYB5 2073 aa23.23■■□□□ 1.31
COMMD4-220ENST00000567720 TATP17735 454 aaPredicted RBP23.23■■□□□ 1.31
COMMD4-220ENST00000567720 FAM196AQ6ZSG2 479 aa23.23■■□□□ 1.31
COMMD4-220ENST00000567720 ITGB4P16144 1822 aa23.23■■□□□ 1.31
COMMD4-220ENST00000567720 RREB1Q92766 1687 aa23.22■■□□□ 1.31
COMMD4-220ENST00000567720 DIAPH1O60610 1272 aaKnown RBP23.22■■□□□ 1.31
COMMD4-220ENST00000567720 RALBP1Q15311 655 aa23.21■■□□□ 1.31
COMMD4-220ENST00000567720 ZCRB1Q8TBF4 217 aaKnown RBP23.2■■□□□ 1.3
COMMD4-220ENST00000567720 PCDH11XQ9BZA7 1347 aa23.18■■□□□ 1.3
COMMD4-220ENST00000567720 PCDH11YQ9BZA8 1340 aa23.18■■□□□ 1.3
COMMD4-220ENST00000567720 SULT6B1Q6IMI4 303 aa23.18■■□□□ 1.3
COMMD4-220ENST00000567720 CFAP53Q96M91 514 aa23.18■■□□□ 1.3
COMMD4-220ENST00000567720 NUP188Q5SRE5 1749 aa23.17■■□□□ 1.3
COMMD4-220ENST00000567720 MYBBP1AQ9BQG0 1328 aaKnown RBP23.17■■□□□ 1.3
COMMD4-220ENST00000567720 TRIM37O94972 964 aa23.17■■□□□ 1.3
COMMD4-220ENST00000567720 DDX54Q8TDD1 881 aaKnown RBP23.17■■□□□ 1.3
COMMD4-220ENST00000567720 PRKRIP1Q9H875 184 aaPredicted RBP23.17■■□□□ 1.3
COMMD4-220ENST00000567720 SCN11AQ9UI33 1791 aa23.17■■□□□ 1.3
COMMD4-220ENST00000567720 CYP27B1O15528 508 aa23.15■■□□□ 1.3
COMMD4-220ENST00000567720 HMOX1P09601 288 aa23.15■■□□□ 1.3
COMMD4-220ENST00000567720 CCDC125Q86Z20 511 aa23.15■■□□□ 1.3
COMMD4-220ENST00000567720 ADAMTS7Q9UKP4 1686 aa23.13■■□□□ 1.29
COMMD4-220ENST00000567720 U2SURPO15042 1029 aaKnown RBP23.13■■□□□ 1.29
COMMD4-220ENST00000567720 PTF1AQ7RTS3 328 aa23.13■■□□□ 1.29
COMMD4-220ENST00000567720 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.13■■□□□ 1.29
COMMD4-220ENST00000567720 LY75O60449 1722 aa23.12■■□□□ 1.29
COMMD4-220ENST00000567720 DEFB132Q7Z7B7 95 aa23.11■■□□□ 1.29
COMMD4-220ENST00000567720 ACSBG1Q96GR2 724 aa23.11■■□□□ 1.29
COMMD4-220ENST00000567720 SPG7Q9UQ90 795 aa23.11■■□□□ 1.29
COMMD4-220ENST00000567720 DLG5Q8TDM6 1919 aa23.1■■□□□ 1.29
COMMD4-220ENST00000567720 SF3B2Q13435 895 aaKnown RBP23.1■■□□□ 1.29
COMMD4-220ENST00000567720 KCNQ2O43526 872 aa23.09■■□□□ 1.29
COMMD4-220ENST00000567720 KDM6AO15550 1401 aaPredicted RBP23.08■■□□□ 1.29
COMMD4-220ENST00000567720 BCL11BQ9C0K0 894 aaPredicted RBP23.08■■□□□ 1.29
COMMD4-220ENST00000567720 PHKG2P15735 406 aa23.07■■□□□ 1.28
COMMD4-220ENST00000567720 RSPH6AQ9H0K4 717 aa23.07■■□□□ 1.28
COMMD4-220ENST00000567720 BAG6P46379 1132 aa23.06■■□□□ 1.28
COMMD4-220ENST00000567720 NUDCQ9Y266 331 aa23.06■■□□□ 1.28
COMMD4-220ENST00000567720 SIPA1L3O60292 1781 aaPredicted RBP23.05■■□□□ 1.28
COMMD4-220ENST00000567720 APBA3O96018 575 aa23.05■■□□□ 1.28
COMMD4-220ENST00000567720 AMOTQ4VCS5 1084 aa23.05■■□□□ 1.28
COMMD4-220ENST00000567720 PLEKHO1Q53GL0 409 aaPredicted RBP23.05■■□□□ 1.28
COMMD4-220ENST00000567720 ZNF530Q6P9A1 599 aaPredicted RBP23.05■■□□□ 1.28
COMMD4-220ENST00000567720 U2AF1L5P0DN76 240 aaPredicted RBP23.04■■□□□ 1.28
COMMD4-220ENST00000567720 U2AF1Q01081 240 aaKnown RBP eCLIP23.04■■□□□ 1.28
COMMD4-220ENST00000567720 EN1Q05925 392 aaPredicted RBP23.04■■□□□ 1.28
COMMD4-220ENST00000567720 NKX1-1Q15270 411 aaPredicted RBP23.04■■□□□ 1.28
COMMD4-220ENST00000567720 IFNL2Q8IZJ0 200 aa23.04■■□□□ 1.28
COMMD4-220ENST00000567720 MRC1P22897 1456 aa23.04■■□□□ 1.28
COMMD4-220ENST00000567720 PAPPAQ13219 1627 aa23.04■■□□□ 1.28
COMMD4-220ENST00000567720 PRKAR2BP31323 418 aa23.02■■□□□ 1.28
COMMD4-220ENST00000567720 PRIM1P49642 420 aaKnown RBP23.01■■□□□ 1.27
COMMD4-220ENST00000567720 TAF1LQ8IZX4 1826 aa23.01■■□□□ 1.27
COMMD4-220ENST00000567720 EZH2Q15910 746 aaKnown RBP23■■□□□ 1.27
COMMD4-220ENST00000567720 MTHFSDQ2M296 383 aaKnown RBP23■■□□□ 1.27
COMMD4-220ENST00000567720 SYTL4Q96C24 671 aaPredicted RBP23■■□□□ 1.27
COMMD4-220ENST00000567720 CAMKK2Q96RR4 588 aa23■■□□□ 1.27
COMMD4-220ENST00000567720 C5P01031 1676 aa22.99■■□□□ 1.27
COMMD4-220ENST00000567720 ANP32CO43423 234 aa22.98■■□□□ 1.27
COMMD4-220ENST00000567720 C1orf141Q5JVX7 400 aa22.98■■□□□ 1.27
COMMD4-220ENST00000567720 TUBGCP6Q96RT7 1819 aa22.98■■□□□ 1.27
COMMD4-220ENST00000567720 FCHSD2O94868 740 aa22.97■■□□□ 1.27
COMMD4-220ENST00000567720 PHACTR3Q96KR7 559 aa22.97■■□□□ 1.27
COMMD4-220ENST00000567720 PLSCR1O15162 318 aa22.96■■□□□ 1.27
COMMD4-220ENST00000567720 HSP90AB1P08238 724 aaKnown RBP22.96■■□□□ 1.27
COMMD4-220ENST00000567720 AKAP4Q5JQC9 854 aa22.96■■□□□ 1.27
COMMD4-220ENST00000567720 DCAF5Q96JK2 942 aa22.96■■□□□ 1.27
COMMD4-220ENST00000567720 MAP3K5Q99683 1374 aa22.96■■□□□ 1.27
COMMD4-220ENST00000567720 UBR2Q8IWV8 1755 aa22.95■■□□□ 1.26
COMMD4-220ENST00000567720 CCDC184Q52MB2 194 aa22.94■■□□□ 1.26
COMMD4-220ENST00000567720 MPRIPQ6WCQ1 1025 aa22.94■■□□□ 1.26
COMMD4-220ENST00000567720 ZNF831Q5JPB2 1677 aa22.93■■□□□ 1.26
COMMD4-220ENST00000567720 CICQ96RK0 1608 aaPredicted RBP22.93■■□□□ 1.26
COMMD4-220ENST00000567720 GAS2L2Q8NHY3 880 aa22.93■■□□□ 1.26
COMMD4-220ENST00000567720 PLEKHF1Q96S99 279 aa22.93■■□□□ 1.26
COMMD4-220ENST00000567720 COL5A3P25940 1745 aaPredicted RBP22.92■■□□□ 1.26
COMMD4-220ENST00000567720 QSER1Q2KHR3 1735 aa22.91■■□□□ 1.26
COMMD4-220ENST00000567720 PROM2Q8N271 834 aa22.91■■□□□ 1.26
COMMD4-220ENST00000567720 PIGBQ92521 554 aa22.91■■□□□ 1.26
COMMD4-220ENST00000567720 TMOD3Q9NYL9 352 aa22.91■■□□□ 1.26
COMMD4-220ENST00000567720 TJP1Q07157 1748 aa22.91■■□□□ 1.26
COMMD4-220ENST00000567720 PALLDQ8WX93 1383 aa22.9■■□□□ 1.26
COMMD4-220ENST00000567720 ERVV-2B6SEH9 535 aa22.89■■□□□ 1.25
COMMD4-220ENST00000567720 WDR43Q15061 677 aaKnown RBP eCLIP22.89■■□□□ 1.25
COMMD4-220ENST00000567720 TXNRD1Q16881 649 aa22.89■■□□□ 1.25
COMMD4-220ENST00000567720 RNMTO43148 476 aaKnown RBP22.88■■□□□ 1.25
COMMD4-220ENST00000567720 LGR6Q9HBX8 967 aa22.88■■□□□ 1.25
COMMD4-220ENST00000567720 CASZ1Q86V15 1759 aa22.88■■□□□ 1.25
COMMD4-220ENST00000567720 CEMIPQ8WUJ3 1361 aa22.88■■□□□ 1.25
COMMD4-220ENST00000567720 C4BP0C0L5 1744 aa22.87■■□□□ 1.25
COMMD4-220ENST00000567720 KDM3BQ7LBC6 1761 aa22.86■■□□□ 1.25
COMMD4-220ENST00000567720 MAPK8IP3Q9UPT6 1336 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms