RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 EYA1Q99502 592 aa25.52■■□□□ 1.68
CLN3-227ENST00000567495 NCAPD2Q15021 1401 aa25.52■■□□□ 1.68
CLN3-227ENST00000567495 TXNRD1Q16881 649 aa25.51■■□□□ 1.67
CLN3-227ENST00000567495 PROM2Q8N271 834 aa25.51■■□□□ 1.67
CLN3-227ENST00000567495 PCDH11XQ9BZA7 1347 aa25.51■■□□□ 1.67
CLN3-227ENST00000567495 PCDH11YQ9BZA8 1340 aa25.51■■□□□ 1.67
CLN3-227ENST00000567495 ANKRD26Q9UPS8 1709 aa25.51■■□□□ 1.67
CLN3-227ENST00000567495 RGPD3A6NKT7 1758 aaPredicted RBP25.51■■□□□ 1.67
CLN3-227ENST00000567495 RGPD4Q7Z3J3 1758 aa25.51■■□□□ 1.67
CLN3-227ENST00000567495 PER1O15534 1290 aaPredicted RBP25.5■■□□□ 1.67
CLN3-227ENST00000567495 EIF4A2Q14240 407 aaKnown RBP25.5■■□□□ 1.67
CLN3-227ENST00000567495 RREB1Q92766 1687 aa25.49■■□□□ 1.67
CLN3-227ENST00000567495 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.49■■□□□ 1.67
CLN3-227ENST00000567495 PRIM1P49642 420 aaKnown RBP25.48■■□□□ 1.67
CLN3-227ENST00000567495 SPG7Q9UQ90 795 aa25.48■■□□□ 1.67
CLN3-227ENST00000567495 NHSQ6T4R5 1651 aa25.48■■□□□ 1.67
CLN3-227ENST00000567495 PLEKHG2Q9H7P9 1386 aa25.46■■□□□ 1.67
CLN3-227ENST00000567495 SYTL4Q96C24 671 aaPredicted RBP25.46■■□□□ 1.67
CLN3-227ENST00000567495 MAP2P11137 1827 aaKnown RBP25.46■■□□□ 1.67
CLN3-227ENST00000567495 RGPD2P0DJD1 1756 aa25.46■■□□□ 1.67
CLN3-227ENST00000567495 NPC1L1Q9UHC9 1359 aa25.45■■□□□ 1.67
CLN3-227ENST00000567495 NUP188Q5SRE5 1749 aa25.43■■□□□ 1.66
CLN3-227ENST00000567495 SLC27A3Q5K4L6 730 aa25.43■■□□□ 1.66
CLN3-227ENST00000567495 IGSF1Q8N6C5 1336 aa25.42■■□□□ 1.66
CLN3-227ENST00000567495 CYP27B1O15528 508 aa25.42■■□□□ 1.66
CLN3-227ENST00000567495 STK32BQ9NY57 414 aa25.42■■□□□ 1.66
CLN3-227ENST00000567495 ANO8Q9HCE9 1232 aaPredicted RBP25.41■■□□□ 1.66
CLN3-227ENST00000567495 NKX1-1Q15270 411 aaPredicted RBP25.4■■□□□ 1.66
CLN3-227ENST00000567495 CC2D1BQ5T0F9 858 aaKnown RBP25.4■■□□□ 1.66
CLN3-227ENST00000567495 HMGB2P26583 209 aaKnown RBP25.38■■□□□ 1.65
CLN3-227ENST00000567495 MTHFSP49914 203 aa25.38■■□□□ 1.65
CLN3-227ENST00000567495 SLC15A2Q16348 729 aa25.38■■□□□ 1.65
CLN3-227ENST00000567495 LRP5O75197 1615 aa25.37■■□□□ 1.65
CLN3-227ENST00000567495 IFNL2Q8IZJ0 200 aa25.36■■□□□ 1.65
CLN3-227ENST00000567495 KAT6BQ8WYB5 2073 aa25.36■■□□□ 1.65
CLN3-227ENST00000567495 IL13P35225 146 aa25.35■■□□□ 1.65
CLN3-227ENST00000567495 SPON1Q9HCB6 807 aa25.35■■□□□ 1.65
CLN3-227ENST00000567495 SHANK3Q9BYB0 1731 aa25.34■■□□□ 1.65
CLN3-227ENST00000567495 AMOTQ4VCS5 1084 aa25.34■■□□□ 1.65
CLN3-227ENST00000567495 PLEKHO1Q53GL0 409 aaPredicted RBP25.34■■□□□ 1.65
CLN3-227ENST00000567495 BTAF1O14981 1849 aa25.34■■□□□ 1.65
CLN3-227ENST00000567495 PHKG2P15735 406 aa25.33■■□□□ 1.65
CLN3-227ENST00000567495 LRRC4BQ9NT99 713 aa25.33■■□□□ 1.65
CLN3-227ENST00000567495 HSP90AB1P08238 724 aaKnown RBP25.32■■□□□ 1.64
CLN3-227ENST00000567495 MPRIPQ6WCQ1 1025 aa25.32■■□□□ 1.64
CLN3-227ENST00000567495 PKD1L3Q7Z443 1732 aa25.32■■□□□ 1.64
CLN3-227ENST00000567495 SMARCC1Q92922 1105 aaPredicted RBP25.31■■□□□ 1.64
CLN3-227ENST00000567495 SULT6B1Q6IMI4 303 aa25.3■■□□□ 1.64
CLN3-227ENST00000567495 KDRP35968 1356 aa25.3■■□□□ 1.64
CLN3-227ENST00000567495 CCNL1Q9UK58 526 aaPredicted RBP25.29■■□□□ 1.64
CLN3-227ENST00000567495 DOT1LQ8TEK3 1739 aa25.29■■□□□ 1.64
CLN3-227ENST00000567495 AEBP1Q8IUX7 1158 aa25.28■■□□□ 1.64
CLN3-227ENST00000567495 DIAPH1O60610 1272 aaKnown RBP25.27■■□□□ 1.64
CLN3-227ENST00000567495 TMOD3Q9NYL9 352 aa25.27■■□□□ 1.64
CLN3-227ENST00000567495 PIGBQ92521 554 aa25.26■■□□□ 1.63
CLN3-227ENST00000567495 AKT1S1Q96B36 256 aa25.26■■□□□ 1.63
CLN3-227ENST00000567495 DCAF5Q96JK2 942 aa25.26■■□□□ 1.63
CLN3-227ENST00000567495 ERVV-2B6SEH9 535 aa25.25■■□□□ 1.63
CLN3-227ENST00000567495 ZNF530Q6P9A1 599 aaPredicted RBP25.25■■□□□ 1.63
CLN3-227ENST00000567495 PALLDQ8WX93 1383 aa25.25■■□□□ 1.63
CLN3-227ENST00000567495 CNGB1Q14028 1251 aaPredicted RBP25.24■■□□□ 1.63
CLN3-227ENST00000567495 ZNF827Q17R98 1081 aa25.24■■□□□ 1.63
CLN3-227ENST00000567495 C1orf141Q5JVX7 400 aa25.24■■□□□ 1.63
CLN3-227ENST00000567495 PDGFDQ9GZP0 370 aaPredicted RBP25.23■■□□□ 1.63
CLN3-227ENST00000567495 MTFR1LQ9H019 292 aa25.23■■□□□ 1.63
CLN3-227ENST00000567495 TFCP2L1Q9NZI6 479 aa25.23■■□□□ 1.63
CLN3-227ENST00000567495 PPP1R1BQ9UD71 204 aaPredicted RBP25.23■■□□□ 1.63
CLN3-227ENST00000567495 PAPPAQ13219 1627 aa25.23■■□□□ 1.63
CLN3-227ENST00000567495 ZBTB7AO95365 584 aa25.21■■□□□ 1.63
CLN3-227ENST00000567495 KCNQ4P56696 695 aa25.21■■□□□ 1.63
CLN3-227ENST00000567495 SLC16A10Q8TF71 515 aa25.21■■□□□ 1.63
CLN3-227ENST00000567495 CFAP53Q96M91 514 aa25.21■■□□□ 1.63
CLN3-227ENST00000567495 LY75O60449 1722 aa25.17■■□□□ 1.62
CLN3-227ENST00000567495 CASZ1Q86V15 1759 aa25.17■■□□□ 1.62
CLN3-227ENST00000567495 LOC102724428A0A0B4J2F2 783 aa25.16■■□□□ 1.62
CLN3-227ENST00000567495 HMOX1P09601 288 aa25.16■■□□□ 1.62
CLN3-227ENST00000567495 SIK1P57059 783 aa25.16■■□□□ 1.62
CLN3-227ENST00000567495 CABP4P57796 275 aa25.16■■□□□ 1.62
CLN3-227ENST00000567495 ATF5Q9Y2D1 282 aaPredicted RBP25.16■■□□□ 1.62
CLN3-227ENST00000567495 AKAP4Q5JQC9 854 aa25.15■■□□□ 1.62
CLN3-227ENST00000567495 ASAP1Q9ULH1 1129 aa25.15■■□□□ 1.62
CLN3-227ENST00000567495 TOGARAM1Q9Y4F4 1720 aa25.15■■□□□ 1.62
CLN3-227ENST00000567495 PNPLA7Q6ZV29 1317 aa25.14■■□□□ 1.62
CLN3-227ENST00000567495 U2SURPO15042 1029 aaKnown RBP25.14■■□□□ 1.62
CLN3-227ENST00000567495 PPP2R1AP30153 589 aa25.14■■□□□ 1.62
CLN3-227ENST00000567495 PTGER2P43116 358 aa25.14■■□□□ 1.62
CLN3-227ENST00000567495 FLAD1Q8NFF5 587 aa25.14■■□□□ 1.62
CLN3-227ENST00000567495 ATG3Q9NT62 314 aa25.14■■□□□ 1.62
CLN3-227ENST00000567495 NUDCQ9Y266 331 aa25.14■■□□□ 1.62
CLN3-227ENST00000567495 COL3A1P02461 1466 aaPredicted RBP25.13■■□□□ 1.61
CLN3-227ENST00000567495 KDM6AO15550 1401 aaPredicted RBP25.12■■□□□ 1.61
CLN3-227ENST00000567495 SGIP1Q9BQI5 828 aa25.1■■□□□ 1.61
CLN3-227ENST00000567495 ITGB4P16144 1822 aa25.09■■□□□ 1.61
CLN3-227ENST00000567495 AK7Q96M32 723 aa25.09■■□□□ 1.61
CLN3-227ENST00000567495 ATP6V1AP38606 617 aa25.08■■□□□ 1.61
CLN3-227ENST00000567495 MTHFSDQ2M296 383 aaKnown RBP25.08■■□□□ 1.61
CLN3-227ENST00000567495 NFATC2IPQ8NCF5 419 aa25.08■■□□□ 1.61
CLN3-227ENST00000567495 POLD1P28340 1107 aa25.07■■□□□ 1.6
CLN3-227ENST00000567495 ZEB1P37275 1124 aaPredicted RBP25.07■■□□□ 1.6
CLN3-227ENST00000567495 COL23A1Q86Y22 540 aaPredicted RBP25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms