RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TATP17735 454 aaPredicted RBP26.35■■□□□ 1.81
CLN3-225ENST00000566824 SULT6B1Q6IMI4 303 aa26.34■■□□□ 1.81
CLN3-225ENST00000566824 ZCRB1Q8TBF4 217 aaKnown RBP26.33■■□□□ 1.81
CLN3-225ENST00000566824 DDX54Q8TDD1 881 aaKnown RBP26.33■■□□□ 1.81
CLN3-225ENST00000566824 HMOX1P09601 288 aa26.32■■□□□ 1.8
CLN3-225ENST00000566824 CFAP53Q96M91 514 aa26.31■■□□□ 1.8
CLN3-225ENST00000566824 MYBBP1AQ9BQG0 1328 aaKnown RBP26.31■■□□□ 1.8
CLN3-225ENST00000566824 KDRP35968 1356 aa26.3■■□□□ 1.8
CLN3-225ENST00000566824 U2SURPO15042 1029 aaKnown RBP26.3■■□□□ 1.8
CLN3-225ENST00000566824 FAM196AQ6ZSG2 479 aa26.3■■□□□ 1.8
CLN3-225ENST00000566824 PTF1AQ7RTS3 328 aa26.29■■□□□ 1.8
CLN3-225ENST00000566824 TNS1Q9HBL0 1735 aaKnown RBP26.29■■□□□ 1.8
CLN3-225ENST00000566824 CYP27B1O15528 508 aa26.27■■□□□ 1.8
CLN3-225ENST00000566824 KAT6BQ8WYB5 2073 aa26.26■■□□□ 1.8
CLN3-225ENST00000566824 TRIM37O94972 964 aa26.26■■□□□ 1.79
CLN3-225ENST00000566824 DOT1LQ8TEK3 1739 aa26.24■■□□□ 1.79
CLN3-225ENST00000566824 BCL9O00512 1426 aa26.23■■□□□ 1.79
CLN3-225ENST00000566824 ACSBG1Q96GR2 724 aa26.23■■□□□ 1.79
CLN3-225ENST00000566824 KCNQ2O43526 872 aa26.22■■□□□ 1.79
CLN3-225ENST00000566824 TOGARAM1Q9Y4F4 1720 aa26.22■■□□□ 1.79
CLN3-225ENST00000566824 PCDH11XQ9BZA7 1347 aa26.21■■□□□ 1.79
CLN3-225ENST00000566824 PCDH11YQ9BZA8 1340 aa26.21■■□□□ 1.79
CLN3-225ENST00000566824 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.21■■□□□ 1.79
CLN3-225ENST00000566824 SPG7Q9UQ90 795 aa26.21■■□□□ 1.79
CLN3-225ENST00000566824 NHSQ6T4R5 1651 aa26.21■■□□□ 1.79
CLN3-225ENST00000566824 U2AF1L5P0DN76 240 aaPredicted RBP26.2■■□□□ 1.79
CLN3-225ENST00000566824 U2AF1Q01081 240 aaKnown RBP eCLIP26.2■■□□□ 1.79
CLN3-225ENST00000566824 CCDC184Q52MB2 194 aa26.2■■□□□ 1.79
CLN3-225ENST00000566824 DEFB132Q7Z7B7 95 aa26.19■■□□□ 1.78
CLN3-225ENST00000566824 RSPH6AQ9H0K4 717 aa26.19■■□□□ 1.78
CLN3-225ENST00000566824 NUDCQ9Y266 331 aa26.19■■□□□ 1.78
CLN3-225ENST00000566824 PHKG2P15735 406 aa26.17■■□□□ 1.78
CLN3-225ENST00000566824 PLEKHO1Q53GL0 409 aaPredicted RBP26.17■■□□□ 1.78
CLN3-225ENST00000566824 ANP32CO43423 234 aa26.16■■□□□ 1.78
CLN3-225ENST00000566824 ZNF530Q6P9A1 599 aaPredicted RBP26.16■■□□□ 1.78
CLN3-225ENST00000566824 CCDC125Q86Z20 511 aa26.16■■□□□ 1.78
CLN3-225ENST00000566824 PHACTR3Q96KR7 559 aa26.16■■□□□ 1.78
CLN3-225ENST00000566824 PLEKHG2Q9H7P9 1386 aa26.16■■□□□ 1.78
CLN3-225ENST00000566824 BTAF1O14981 1849 aa26.16■■□□□ 1.78
CLN3-225ENST00000566824 ITGB4P16144 1822 aa26.16■■□□□ 1.78
CLN3-225ENST00000566824 PRKAR2BP31323 418 aa26.15■■□□□ 1.78
CLN3-225ENST00000566824 MTHFSDQ2M296 383 aaKnown RBP26.14■■□□□ 1.78
CLN3-225ENST00000566824 BCL11BQ9C0K0 894 aaPredicted RBP26.14■■□□□ 1.78
CLN3-225ENST00000566824 PRIM1P49642 420 aaKnown RBP26.14■■□□□ 1.77
CLN3-225ENST00000566824 NKX1-1Q15270 411 aaPredicted RBP26.14■■□□□ 1.77
CLN3-225ENST00000566824 AMOTQ4VCS5 1084 aa26.14■■□□□ 1.77
CLN3-225ENST00000566824 IFNL2Q8IZJ0 200 aa26.14■■□□□ 1.77
CLN3-225ENST00000566824 APBA3O96018 575 aa26.13■■□□□ 1.77
CLN3-225ENST00000566824 VIRMAQ69YN4 1812 aaKnown RBP26.12■■□□□ 1.77
CLN3-225ENST00000566824 EN1Q05925 392 aaPredicted RBP26.12■■□□□ 1.77
CLN3-225ENST00000566824 SF3B2Q13435 895 aaKnown RBP26.12■■□□□ 1.77
CLN3-225ENST00000566824 KDM6AO15550 1401 aaPredicted RBP26.1■■□□□ 1.77
CLN3-225ENST00000566824 FCHSD2O94868 740 aa26.1■■□□□ 1.77
CLN3-225ENST00000566824 SYTL4Q96C24 671 aaPredicted RBP26.09■■□□□ 1.77
CLN3-225ENST00000566824 SCN11AQ9UI33 1791 aa26.08■■□□□ 1.77
CLN3-225ENST00000566824 PLEKHF1Q96S99 279 aa26.08■■□□□ 1.77
CLN3-225ENST00000566824 EZH2Q15910 746 aaKnown RBP26.07■■□□□ 1.76
CLN3-225ENST00000566824 MPRIPQ6WCQ1 1025 aa26.07■■□□□ 1.76
CLN3-225ENST00000566824 CAMKK2Q96RR4 588 aa26.07■■□□□ 1.76
CLN3-225ENST00000566824 BAG6P46379 1132 aa26.06■■□□□ 1.76
CLN3-225ENST00000566824 C1orf141Q5JVX7 400 aa26.06■■□□□ 1.76
CLN3-225ENST00000566824 AKAP4Q5JQC9 854 aa26.05■■□□□ 1.76
CLN3-225ENST00000566824 ADAMTS7Q9UKP4 1686 aa26.04■■□□□ 1.76
CLN3-225ENST00000566824 LGR6Q9HBX8 967 aa26.04■■□□□ 1.76
CLN3-225ENST00000566824 ADAMTS8Q9UP79 889 aa26.04■■□□□ 1.76
CLN3-225ENST00000566824 DLG5Q8TDM6 1919 aa26.04■■□□□ 1.76
CLN3-225ENST00000566824 RREB1Q92766 1687 aa26.03■■□□□ 1.76
CLN3-225ENST00000566824 DCAF5Q96JK2 942 aa26.03■■□□□ 1.76
CLN3-225ENST00000566824 RGPD3A6NKT7 1758 aaPredicted RBP26.02■■□□□ 1.76
CLN3-225ENST00000566824 RGPD4Q7Z3J3 1758 aa26.02■■□□□ 1.76
CLN3-225ENST00000566824 PROM2Q8N271 834 aa26.02■■□□□ 1.76
CLN3-225ENST00000566824 PIGBQ92521 554 aa26.02■■□□□ 1.76
CLN3-225ENST00000566824 CCDC146Q8IYE0 955 aa26.01■■□□□ 1.75
CLN3-225ENST00000566824 NUP188Q5SRE5 1749 aa26■■□□□ 1.75
CLN3-225ENST00000566824 PLSCR1O15162 318 aa26■■□□□ 1.75
CLN3-225ENST00000566824 HSP90AB1P08238 724 aaKnown RBP26■■□□□ 1.75
CLN3-225ENST00000566824 WDR43Q15061 677 aaKnown RBP eCLIP26■■□□□ 1.75
CLN3-225ENST00000566824 GAS2L2Q8NHY3 880 aa26■■□□□ 1.75
CLN3-225ENST00000566824 MRS2Q9HD23 443 aa26■■□□□ 1.75
CLN3-225ENST00000566824 MAP3K5Q99683 1374 aa25.99■■□□□ 1.75
CLN3-225ENST00000566824 LY75O60449 1722 aa25.98■■□□□ 1.75
CLN3-225ENST00000566824 RNMTO43148 476 aaKnown RBP25.98■■□□□ 1.75
CLN3-225ENST00000566824 ERVV-2B6SEH9 535 aa25.97■■□□□ 1.75
CLN3-225ENST00000566824 DIEXFQ68CQ4 756 aaKnown RBP25.97■■□□□ 1.75
CLN3-225ENST00000566824 IL17REQ8NFR9 667 aa25.97■■□□□ 1.75
CLN3-225ENST00000566824 GNAT3A8MTJ3 354 aa25.96■■□□□ 1.75
CLN3-225ENST00000566824 PNISRQ8TF01 805 aaKnown RBP25.96■■□□□ 1.75
CLN3-225ENST00000566824 TMOD3Q9NYL9 352 aa25.96■■□□□ 1.75
CLN3-225ENST00000566824 MRC1P22897 1456 aa25.94■■□□□ 1.74
CLN3-225ENST00000566824 KCNQ4P56696 695 aa25.94■■□□□ 1.74
CLN3-225ENST00000566824 CABP4P57796 275 aa25.94■■□□□ 1.74
CLN3-225ENST00000566824 TXNRD1Q16881 649 aa25.94■■□□□ 1.74
CLN3-225ENST00000566824 NFATC2IPQ8NCF5 419 aa25.94■■□□□ 1.74
CLN3-225ENST00000566824 ASAP1Q9ULH1 1129 aa25.94■■□□□ 1.74
CLN3-225ENST00000566824 SIPA1L3O60292 1781 aaPredicted RBP25.94■■□□□ 1.74
CLN3-225ENST00000566824 DCTN1Q14203 1278 aa25.93■■□□□ 1.74
CLN3-225ENST00000566824 NFE2L2Q16236 605 aa25.92■■□□□ 1.74
CLN3-225ENST00000566824 LRRC4BQ9NT99 713 aa25.92■■□□□ 1.74
CLN3-225ENST00000566824 MAPK8IP3Q9UPT6 1336 aa25.92■■□□□ 1.74
CLN3-225ENST00000566824 MCM10Q7L590 875 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms