RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 QSER1Q2KHR3 1735 aa21.1■□□□□ 0.97
SMPD3-208ENST00000566723 NBPF6Q5VWK0 638 aa21.1■□□□□ 0.97
SMPD3-208ENST00000566723 NBPF4Q96M43 638 aa21.1■□□□□ 0.97
SMPD3-208ENST00000566723 PDGFDQ9GZP0 370 aaPredicted RBP21.1■□□□□ 0.97
SMPD3-208ENST00000566723 ZCRB1Q8TBF4 217 aaKnown RBP21.09■□□□□ 0.97
SMPD3-208ENST00000566723 CGNL1Q0VF96 1302 aa21.08■□□□□ 0.97
SMPD3-208ENST00000566723 HSP90AB2PQ58FF8 381 aa21.08■□□□□ 0.97
SMPD3-208ENST00000566723 TUBGCP6Q96RT7 1819 aa21.08■□□□□ 0.96
SMPD3-208ENST00000566723 PKD1L3Q7Z443 1732 aa21.07■□□□□ 0.96
SMPD3-208ENST00000566723 USHBP1Q8N6Y0 703 aa21.07■□□□□ 0.96
SMPD3-208ENST00000566723 ZBTB7AO95365 584 aa21.06■□□□□ 0.96
SMPD3-208ENST00000566723 RAPGEF4Q8WZA2 1011 aa21.06■□□□□ 0.96
SMPD3-208ENST00000566723 NSD2O96028 1365 aa21.06■□□□□ 0.96
SMPD3-208ENST00000566723 CCER1Q8TC90 406 aaPredicted RBP21.05■□□□□ 0.96
SMPD3-208ENST00000566723 EMILIN1Q9Y6C2 1016 aa21.05■□□□□ 0.96
SMPD3-208ENST00000566723 SYTL4Q96C24 671 aaPredicted RBP21.04■□□□□ 0.96
SMPD3-208ENST00000566723 LRRC4BQ9NT99 713 aa21.04■□□□□ 0.96
SMPD3-208ENST00000566723 NCAPD2Q15021 1401 aa21.04■□□□□ 0.96
SMPD3-208ENST00000566723 TATP17735 454 aaPredicted RBP21.03■□□□□ 0.96
SMPD3-208ENST00000566723 PRIM1P49642 420 aaKnown RBP21.03■□□□□ 0.96
SMPD3-208ENST00000566723 EIF4G2P78344 907 aaKnown RBP eCLIP21.03■□□□□ 0.96
SMPD3-208ENST00000566723 SLC27A3Q5K4L6 730 aa21.03■□□□□ 0.96
SMPD3-208ENST00000566723 POLR3GLQ9BT43 218 aa21.03■□□□□ 0.96
SMPD3-208ENST00000566723 PTGER2P43116 358 aa21.02■□□□□ 0.96
SMPD3-208ENST00000566723 ZNF827Q17R98 1081 aa21.02■□□□□ 0.96
SMPD3-208ENST00000566723 MTFR1LQ9H019 292 aa21.02■□□□□ 0.96
SMPD3-208ENST00000566723 PCDH11XQ9BZA7 1347 aa21.02■□□□□ 0.95
SMPD3-208ENST00000566723 PCDH11YQ9BZA8 1340 aa21.02■□□□□ 0.95
SMPD3-208ENST00000566723 ITGB4P16144 1822 aa21.01■□□□□ 0.95
SMPD3-208ENST00000566723 TOGARAM1Q9Y4F4 1720 aa21.01■□□□□ 0.95
SMPD3-208ENST00000566723 HSPA5P11021 654 aaKnown RBP21.01■□□□□ 0.95
SMPD3-208ENST00000566723 ATF5Q9Y2D1 282 aaPredicted RBP21■□□□□ 0.95
SMPD3-208ENST00000566723 PPM1GO15355 546 aaPredicted RBP20.99■□□□□ 0.95
SMPD3-208ENST00000566723 COL24A1Q17RW2 1714 aa20.98■□□□□ 0.95
SMPD3-208ENST00000566723 AKT1S1Q96B36 256 aa20.98■□□□□ 0.95
SMPD3-208ENST00000566723 WASHC2AQ641Q2 1341 aa20.98■□□□□ 0.95
SMPD3-208ENST00000566723 TAF1LQ8IZX4 1826 aa20.97■□□□□ 0.95
SMPD3-208ENST00000566723 C5P01031 1676 aa20.97■□□□□ 0.95
SMPD3-208ENST00000566723 SGIP1Q9BQI5 828 aa20.97■□□□□ 0.95
SMPD3-208ENST00000566723 POLKQ9UBT6 870 aa20.95■□□□□ 0.94
SMPD3-208ENST00000566723 KCNQ4P56696 695 aa20.94■□□□□ 0.94
SMPD3-208ENST00000566723 DCAF8L1A6NGE4 600 aa20.93■□□□□ 0.94
SMPD3-208ENST00000566723 CYP27B1O15528 508 aa20.93■□□□□ 0.94
SMPD3-208ENST00000566723 CCNL1Q9UK58 526 aaPredicted RBP20.93■□□□□ 0.94
SMPD3-208ENST00000566723 PANK3Q9H999 370 aa20.92■□□□□ 0.94
SMPD3-208ENST00000566723 PNPLA7Q6ZV29 1317 aa20.92■□□□□ 0.94
SMPD3-208ENST00000566723 EYA1Q99502 592 aa20.91■□□□□ 0.94
SMPD3-208ENST00000566723 FHDC1Q9C0D6 1143 aaPredicted RBP20.91■□□□□ 0.94
SMPD3-208ENST00000566723 TNNT2P45379 298 aaPredicted RBP20.9■□□□□ 0.94
SMPD3-208ENST00000566723 SLC16A10Q8TF71 515 aa20.9■□□□□ 0.94
SMPD3-208ENST00000566723 TFCP2L1Q9NZI6 479 aa20.9■□□□□ 0.94
SMPD3-208ENST00000566723 UTRNP46939 3433 aa20.9■□□□□ 0.94
SMPD3-208ENST00000566723 PALLDQ8WX93 1383 aa20.89■□□□□ 0.93
SMPD3-208ENST00000566723 MAP3K5Q99683 1374 aa20.89■□□□□ 0.93
SMPD3-208ENST00000566723 ARXQ96QS3 562 aa20.89■□□□□ 0.93
SMPD3-208ENST00000566723 SPG7Q9UQ90 795 aa20.89■□□□□ 0.93
SMPD3-208ENST00000566723 PLEKHG2Q9H7P9 1386 aa20.88■□□□□ 0.93
SMPD3-208ENST00000566723 EIF4A2Q14240 407 aaKnown RBP20.88■□□□□ 0.93
SMPD3-208ENST00000566723 SYT17Q9BSW7 474 aa20.88■□□□□ 0.93
SMPD3-208ENST00000566723 CHD4Q14839 1912 aa20.87■□□□□ 0.93
SMPD3-208ENST00000566723 MPRIPQ6WCQ1 1025 aa20.87■□□□□ 0.93
SMPD3-208ENST00000566723 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.87■□□□□ 0.93
SMPD3-208ENST00000566723 C4BP0C0L5 1744 aa20.87■□□□□ 0.93
SMPD3-208ENST00000566723 YY1P25490 414 aa20.86■□□□□ 0.93
SMPD3-208ENST00000566723 NKX1-1Q15270 411 aaPredicted RBP20.86■□□□□ 0.93
SMPD3-208ENST00000566723 UBR3Q6ZT12 1888 aa20.85■□□□□ 0.93
SMPD3-208ENST00000566723 IGSF1Q8N6C5 1336 aa20.84■□□□□ 0.93
SMPD3-208ENST00000566723 SMARCC1Q92922 1105 aaPredicted RBP20.84■□□□□ 0.93
SMPD3-208ENST00000566723 HMGB2P26583 209 aaKnown RBP20.83■□□□□ 0.93
SMPD3-208ENST00000566723 POLD1P28340 1107 aa20.83■□□□□ 0.93
SMPD3-208ENST00000566723 PIGBQ92521 554 aa20.82■□□□□ 0.92
SMPD3-208ENST00000566723 PHKG2P15735 406 aa20.81■□□□□ 0.92
SMPD3-208ENST00000566723 MORC1Q86VD1 984 aa20.81■□□□□ 0.92
SMPD3-208ENST00000566723 IFNL2Q8IZJ0 200 aa20.81■□□□□ 0.92
SMPD3-208ENST00000566723 KNSTRNQ9Y448 316 aa20.81■□□□□ 0.92
SMPD3-208ENST00000566723 COL23A1Q86Y22 540 aaPredicted RBP20.8■□□□□ 0.92
SMPD3-208ENST00000566723 KIF7Q2M1P5 1343 aa20.79■□□□□ 0.92
SMPD3-208ENST00000566723 GOLGB1Q14789 3259 aaKnown RBP20.79■□□□□ 0.92
SMPD3-208ENST00000566723 TMOD3Q9NYL9 352 aa20.79■□□□□ 0.92
SMPD3-208ENST00000566723 MSH5O43196 834 aa20.78■□□□□ 0.92
SMPD3-208ENST00000566723 ZNF831Q5JPB2 1677 aa20.77■□□□□ 0.91
SMPD3-208ENST00000566723 AMER1Q5JTC6 1135 aaPredicted RBP20.76■□□□□ 0.91
SMPD3-208ENST00000566723 KLHL34Q8N239 644 aa20.76■□□□□ 0.91
SMPD3-208ENST00000566723 FLAD1Q8NFF5 587 aa20.76■□□□□ 0.91
SMPD3-208ENST00000566723 LOC102724428A0A0B4J2F2 783 aa20.75■□□□□ 0.91
SMPD3-208ENST00000566723 SIK1P57059 783 aa20.75■□□□□ 0.91
SMPD3-208ENST00000566723 AK7Q96M32 723 aa20.75■□□□□ 0.91
SMPD3-208ENST00000566723 MSL1Q68DK7 614 aa20.74■□□□□ 0.91
SMPD3-208ENST00000566723 COL5A3P25940 1745 aaPredicted RBP20.73■□□□□ 0.91
SMPD3-208ENST00000566723 KDM6AO15550 1401 aaPredicted RBP20.73■□□□□ 0.91
SMPD3-208ENST00000566723 HSP90AB1P08238 724 aaKnown RBP20.73■□□□□ 0.91
SMPD3-208ENST00000566723 PLEKHO1Q53GL0 409 aaPredicted RBP20.73■□□□□ 0.91
SMPD3-208ENST00000566723 ASAP1Q9ULH1 1129 aa20.73■□□□□ 0.91
SMPD3-208ENST00000566723 VIRMAQ69YN4 1812 aaKnown RBP20.73■□□□□ 0.91
SMPD3-208ENST00000566723 KDRP35968 1356 aa20.72■□□□□ 0.91
SMPD3-208ENST00000566723 SCN11AQ9UI33 1791 aa20.72■□□□□ 0.91
SMPD3-208ENST00000566723 AEBP1Q8IUX7 1158 aa20.72■□□□□ 0.91
SMPD3-208ENST00000566723 ERVV-2B6SEH9 535 aa20.71■□□□□ 0.91
SMPD3-208ENST00000566723 AMOTQ4VCS5 1084 aa20.71■□□□□ 0.91
SMPD3-208ENST00000566723 ZNF530Q6P9A1 599 aaPredicted RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms