RNA–Protein interactions for RNA: ENST00000566370.1

LINC00563-201, long intergenic non-protein coding RNA 563, humanhuman

BASIC

Gene LINC00563, Length 1,400 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00563-201ENST00000566370 ELL2O00472 640 aaPredicted RBP16.82■□□□□ 0.28
LINC00563-201ENST00000566370 HOXC9P31274 260 aa16.82■□□□□ 0.28
LINC00563-201ENST00000566370 TSPYL6Q8N831 410 aa16.82■□□□□ 0.28
LINC00563-201ENST00000566370 C8orf58Q8NAV2 365 aa16.82■□□□□ 0.28
LINC00563-201ENST00000566370 NWD1Q149M9 1564 aa16.82■□□□□ 0.28
LINC00563-201ENST00000566370 PSME1Q06323 249 aa16.81■□□□□ 0.28
LINC00563-201ENST00000566370 DCTN1Q14203 1278 aa16.81■□□□□ 0.28
LINC00563-201ENST00000566370 BABAM1Q9NWV8 329 aa16.81■□□□□ 0.28
LINC00563-201ENST00000566370 MARF1Q9Y4F3 1742 aaKnown RBP16.8■□□□□ 0.28
LINC00563-201ENST00000566370 EYA1Q99502 592 aa16.8■□□□□ 0.28
LINC00563-201ENST00000566370 USP35Q9P2H5 1018 aa16.8■□□□□ 0.28
LINC00563-201ENST00000566370 TSPYL4Q9UJ04 414 aa16.8■□□□□ 0.28
LINC00563-201ENST00000566370 CRB1P82279 1406 aa16.8■□□□□ 0.28
LINC00563-201ENST00000566370 KIF1AQ12756 1690 aa16.8■□□□□ 0.28
LINC00563-201ENST00000566370 ZBTB7BO15156 539 aaPredicted RBP16.79■□□□□ 0.28
LINC00563-201ENST00000566370 MCM10Q7L590 875 aa16.79■□□□□ 0.28
LINC00563-201ENST00000566370 LTN1O94822 1766 aa16.79■□□□□ 0.28
LINC00563-201ENST00000566370 GNAT3A8MTJ3 354 aa16.79■□□□□ 0.28
LINC00563-201ENST00000566370 MTHFSDQ2M296 383 aaKnown RBP16.79■□□□□ 0.28
LINC00563-201ENST00000566370 ESCO1Q5FWF5 840 aa16.79■□□□□ 0.28
LINC00563-201ENST00000566370 STK31Q9BXU1 1019 aa16.79■□□□□ 0.28
LINC00563-201ENST00000566370 LRRC37A3O60309 1634 aa16.78■□□□□ 0.28
LINC00563-201ENST00000566370 NUCB1Q02818 461 aa16.78■□□□□ 0.28
LINC00563-201ENST00000566370 MAP3K5Q99683 1374 aa16.78■□□□□ 0.28
LINC00563-201ENST00000566370 PHRF1Q9P1Y6 1649 aaKnown RBP16.77■□□□□ 0.28
LINC00563-201ENST00000566370 INTS3Q68E01 1043 aaKnown RBP16.77■□□□□ 0.27
LINC00563-201ENST00000566370 CHD1LQ86WJ1 897 aa16.76■□□□□ 0.27
LINC00563-201ENST00000566370 IP6K1Q92551 441 aa16.76■□□□□ 0.27
LINC00563-201ENST00000566370 NBR1Q14596 966 aa16.75■□□□□ 0.27
LINC00563-201ENST00000566370 NUTM2GQ5VZR2 741 aa16.75■□□□□ 0.27
LINC00563-201ENST00000566370 RPAP2Q8IXW5 612 aaPredicted RBP16.74■□□□□ 0.27
LINC00563-201ENST00000566370 NFAT5O94916 1531 aa16.73■□□□□ 0.27
LINC00563-201ENST00000566370 CCT4P50991 539 aaKnown RBP16.73■□□□□ 0.27
LINC00563-201ENST00000566370 CCDC30Q5VVM6 783 aa16.73■□□□□ 0.27
LINC00563-201ENST00000566370 HMMRO75330 724 aa16.72■□□□□ 0.27
LINC00563-201ENST00000566370 PROSER2Q86WR7 435 aaPredicted RBP16.72■□□□□ 0.27
LINC00563-201ENST00000566370 CACNA1FO60840 1977 aa16.72■□□□□ 0.27
LINC00563-201ENST00000566370 ANKRD45Q5TZF3 282 aa16.71■□□□□ 0.27
LINC00563-201ENST00000566370 LTV1Q96GA3 475 aaPredicted RBP16.71■□□□□ 0.27
LINC00563-201ENST00000566370 SLC4A2P04920 1241 aa16.7■□□□□ 0.26
LINC00563-201ENST00000566370 TAF7Q15545 349 aaPredicted RBP16.7■□□□□ 0.26
LINC00563-201ENST00000566370 TBC1D32Q96NH3 1257 aa16.7■□□□□ 0.26
LINC00563-201ENST00000566370 SLIT3O75094 1523 aa16.7■□□□□ 0.26
LINC00563-201ENST00000566370 BMP2KLQ5H9B9 411 aa16.7■□□□□ 0.26
LINC00563-201ENST00000566370 LNPKQ9C0E8 428 aa16.7■□□□□ 0.26
LINC00563-201ENST00000566370 FOXO3O43524 673 aa16.69■□□□□ 0.26
LINC00563-201ENST00000566370 AMOTQ4VCS5 1084 aa16.69■□□□□ 0.26
LINC00563-201ENST00000566370 PLEKHO1Q53GL0 409 aaPredicted RBP16.69■□□□□ 0.26
LINC00563-201ENST00000566370 NCAPD2Q15021 1401 aa16.68■□□□□ 0.26
LINC00563-201ENST00000566370 NCOA3Q9Y6Q9 1424 aa16.68■□□□□ 0.26
LINC00563-201ENST00000566370 FAM208AQ9UK61 1670 aaKnown RBP16.68■□□□□ 0.26
LINC00563-201ENST00000566370 ANKRD44Q8N8A2 993 aa16.68■□□□□ 0.26
LINC00563-201ENST00000566370 C19orf44Q9H6X5 657 aa16.68■□□□□ 0.26
LINC00563-201ENST00000566370 ZBTB7CA1YPR0 619 aa16.67■□□□□ 0.26
LINC00563-201ENST00000566370 C1orf115Q9H7X2 142 aa16.67■□□□□ 0.26
LINC00563-201ENST00000566370 DCCP43146 1447 aa16.67■□□□□ 0.26
LINC00563-201ENST00000566370 ATF3P18847 181 aa16.66■□□□□ 0.26
LINC00563-201ENST00000566370 C22orf23Q9BZE7 217 aa16.66■□□□□ 0.26
LINC00563-201ENST00000566370 USP19O94966 1318 aa16.66■□□□□ 0.26
LINC00563-201ENST00000566370 MSH6P52701 1360 aa16.66■□□□□ 0.26
LINC00563-201ENST00000566370 RGS12O14924 1447 aa16.66■□□□□ 0.26
LINC00563-201ENST00000566370 PXDNLA1KZ92 1463 aa16.66■□□□□ 0.26
LINC00563-201ENST00000566370 LMO7Q8WWI1 1683 aa16.65■□□□□ 0.26
LINC00563-201ENST00000566370 OVOS2A0A0G2JMS6 1433 aa16.65■□□□□ 0.26
LINC00563-201ENST00000566370 GNAI3P08754 354 aa16.65■□□□□ 0.26
LINC00563-201ENST00000566370 HOXB7P09629 217 aa16.65■□□□□ 0.26
LINC00563-201ENST00000566370 MFAP1P55081 439 aaKnown RBP16.65■□□□□ 0.26
LINC00563-201ENST00000566370 C1orf141Q5JVX7 400 aa16.65■□□□□ 0.26
LINC00563-201ENST00000566370 DCTPP1Q9H773 170 aa16.65■□□□□ 0.26
LINC00563-201ENST00000566370 TRPM3Q9HCF6 1732 aaPredicted RBP16.65■□□□□ 0.26
LINC00563-201ENST00000566370 C1orf167Q5SNV9 1468 aa16.64■□□□□ 0.25
LINC00563-201ENST00000566370 KRT24Q2M2I5 525 aa16.64■□□□□ 0.25
LINC00563-201ENST00000566370 AKAP4Q5JQC9 854 aa16.64■□□□□ 0.25
LINC00563-201ENST00000566370 LMOD2Q6P5Q4 547 aa16.64■□□□□ 0.25
LINC00563-201ENST00000566370 KRT28Q7Z3Y7 464 aa16.64■□□□□ 0.25
LINC00563-201ENST00000566370 MST1RQ04912 1400 aa16.64■□□□□ 0.25
LINC00563-201ENST00000566370 SEC24BO95487 1268 aa16.63■□□□□ 0.25
LINC00563-201ENST00000566370 GCP02774 474 aa16.63■□□□□ 0.25
LINC00563-201ENST00000566370 TEFQ10587 303 aa16.63■□□□□ 0.25
LINC00563-201ENST00000566370 CASC1Q6TDU7 716 aa16.63■□□□□ 0.25
LINC00563-201ENST00000566370 MIS18AQ9NYP9 233 aa16.63■□□□□ 0.25
LINC00563-201ENST00000566370 N4BP2Q86UW6 1770 aaPredicted RBP16.63■□□□□ 0.25
LINC00563-201ENST00000566370 FKBP5Q13451 457 aaPredicted RBP16.62■□□□□ 0.25
LINC00563-201ENST00000566370 SLC4A10Q6U841 1118 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 CEMIPQ8WUJ3 1361 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 GNAI2P04899 355 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 FLIIQ13045 1269 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 CEP85Q6P2H3 762 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 ZNF530Q6P9A1 599 aaPredicted RBP16.62■□□□□ 0.25
LINC00563-201ENST00000566370 ARHGEF25Q86VW2 580 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 RBM33Q96EV2 1170 aaKnown RBP16.62■□□□□ 0.25
LINC00563-201ENST00000566370 ORAI2Q96SN7 254 aa16.62■□□□□ 0.25
LINC00563-201ENST00000566370 MED1Q15648 1581 aaPredicted RBP16.61■□□□□ 0.25
LINC00563-201ENST00000566370 CDC45O75419 566 aa16.61■□□□□ 0.25
LINC00563-201ENST00000566370 HDGFL1Q5TGJ6 251 aa16.61■□□□□ 0.25
LINC00563-201ENST00000566370 NBPF6Q5VWK0 638 aa16.61■□□□□ 0.25
LINC00563-201ENST00000566370 SIRT2Q8IXJ6 389 aa16.61■□□□□ 0.25
LINC00563-201ENST00000566370 USHBP1Q8N6Y0 703 aa16.61■□□□□ 0.25
LINC00563-201ENST00000566370 IL17REQ8NFR9 667 aa16.61■□□□□ 0.25
LINC00563-201ENST00000566370 NBPF4Q96M43 638 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms