RNA–Protein interactions for RNA: ENST00000566279.5

TCF4-231, Transcript of transcription factor 4, human

TSL 5 BASIC

Gene TCF4, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-231	ENST00000566279	NCBP3	Q53F19	620 aa	Known RBP	13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	GJD4	Q96KN9	370 aa	Predicted RBP	13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	NEUROD2	Q15784	382 aa		13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	NLRP2	Q9NX02	1062 aa		13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	CRB1	P82279	1406 aa		13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	SPATA31A5	Q5VU36	1347 aa		13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	SPATA31A7	Q8IWB4	1347 aa		13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	EIF4A2	Q14240	407 aa	Known RBP	13.21	□□□□□ -0.29
TCF4-231	ENST00000566279	FAM98C	Q17RN3	349 aa	Known RBP	13.21	□□□□□ -0.29
TCF4-231	ENST00000566279	PLEKHF1	Q96S99	279 aa		13.21	□□□□□ -0.29
TCF4-231	ENST00000566279	SPATA31A1	Q5TZJ5	1347 aa		13.21	□□□□□ -0.29
TCF4-231	ENST00000566279	U2SURP	O15042	1029 aa	Known RBP	13.21	□□□□□ -0.3
TCF4-231	ENST00000566279	DIAPH1	O60610	1272 aa	Known RBP	13.21	□□□□□ -0.3
TCF4-231	ENST00000566279	NBPF6	Q5VWK0	638 aa		13.21	□□□□□ -0.3
TCF4-231	ENST00000566279	NBPF4	Q96M43	638 aa		13.21	□□□□□ -0.3
TCF4-231	ENST00000566279	WNK3	Q9BYP7	1800 aa		13.2	□□□□□ -0.3
TCF4-231	ENST00000566279	FAM208A	Q9UK61	1670 aa	Known RBP	13.2	□□□□□ -0.3
TCF4-231	ENST00000566279	WDR63	Q8IWG1	891 aa		13.2	□□□□□ -0.3
TCF4-231	ENST00000566279		A0A0G2JS52	829 aa		13.19	□□□□□ -0.3
TCF4-231	ENST00000566279	CRBN	Q96SW2	442 aa		13.19	□□□□□ -0.3
TCF4-231	ENST00000566279	KIF24	Q5T7B8	1368 aa		13.19	□□□□□ -0.3
TCF4-231	ENST00000566279	RXRB	P28702	533 aa		13.19	□□□□□ -0.3
TCF4-231	ENST00000566279	C20orf194	Q5TEA3	1177 aa		13.19	□□□□□ -0.3
TCF4-231	ENST00000566279	RGS12	O14924	1447 aa		13.18	□□□□□ -0.3
TCF4-231	ENST00000566279	RBM6	P78332	1123 aa	Known RBP	13.18	□□□□□ -0.3
TCF4-231	ENST00000566279	BRWD3	Q6RI45	1802 aa		13.18	□□□□□ -0.3
TCF4-231	ENST00000566279	ILDR2	Q71H61	639 aa		13.18	□□□□□ -0.3
TCF4-231	ENST00000566279	EYA1	Q99502	592 aa		13.18	□□□□□ -0.3
TCF4-231	ENST00000566279	RGPD1	P0DJD0	1748 aa		13.17	□□□□□ -0.3
TCF4-231	ENST00000566279	IL13	P35225	146 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	CARD10	Q9BWT7	1032 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	RBM19	Q9Y4C8	960 aa	Known RBP	13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	EP400	Q96L91	3159 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	THSD7A	Q9UPZ6	1657 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	LRRC37A3	O60309	1634 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	MEGF6	O75095	1541 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	TMPO	P42166	694 aa	Known RBP	13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	AEBP1	Q8IUX7	1158 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	MAPK8IP3	Q9UPT6	1336 aa		13.16	□□□□□ -0.3
TCF4-231	ENST00000566279	BCAR3	O75815	825 aa		13.15	□□□□□ -0.3
TCF4-231	ENST00000566279	FAM182B	Q5T319	152 aa		13.15	□□□□□ -0.3
TCF4-231	ENST00000566279	HMOX1	P09601	288 aa		13.15	□□□□□ -0.3
TCF4-231	ENST00000566279	SEPT12	Q8IYM1	358 aa		13.15	□□□□□ -0.3
TCF4-231	ENST00000566279	TRIM35	Q9UPQ4	493 aa		13.15	□□□□□ -0.3
TCF4-231	ENST00000566279	FCHSD2	O94868	740 aa		13.14	□□□□□ -0.31
TCF4-231	ENST00000566279	RSPH6A	Q9H0K4	717 aa		13.14	□□□□□ -0.31
TCF4-231	ENST00000566279	PNN	Q9H307	717 aa	Known RBP	13.14	□□□□□ -0.31
TCF4-231	ENST00000566279	PARP4	Q9UKK3	1724 aa	Known RBP	13.13	□□□□□ -0.31
TCF4-231	ENST00000566279	DISP2	A7MBM2	1401 aa		13.13	□□□□□ -0.31
TCF4-231	ENST00000566279	IGSF1	Q8N6C5	1336 aa		13.13	□□□□□ -0.31
TCF4-231	ENST00000566279	SHANK3	Q9BYB0	1731 aa		13.12	□□□□□ -0.31
TCF4-231	ENST00000566279	SULT6B1	Q6IMI4	303 aa		13.12	□□□□□ -0.31
TCF4-231	ENST00000566279	BARGIN	Q6ZT62	677 aa		13.12	□□□□□ -0.31
TCF4-231	ENST00000566279	MYH16	Q9H6N6	1097 aa		13.12	□□□□□ -0.31
TCF4-231	ENST00000566279	IL2RB	P14784	551 aa		13.12	□□□□□ -0.31
TCF4-231	ENST00000566279	PRKAR2B	P31323	418 aa		13.12	□□□□□ -0.31
TCF4-231	ENST00000566279	THRAP3	Q9Y2W1	955 aa	Known RBP	13.11	□□□□□ -0.31
TCF4-231	ENST00000566279	NCAPD2	Q15021	1401 aa		13.11	□□□□□ -0.31
TCF4-231	ENST00000566279	ONECUT3	O60422	494 aa	Predicted RBP	13.1	□□□□□ -0.31
TCF4-231	ENST00000566279	RARS	P54136	660 aa	Known RBP	13.1	□□□□□ -0.31
TCF4-231	ENST00000566279	RIPK4	P57078	832 aa		13.1	□□□□□ -0.31
TCF4-231	ENST00000566279	FANCI	Q9NVI1	1328 aa		13.1	□□□□□ -0.31
TCF4-231	ENST00000566279	IL16	Q14005	1332 aa		13.09	□□□□□ -0.31
TCF4-231	ENST00000566279	DDB1	Q16531	1140 aa		13.09	□□□□□ -0.31
TCF4-231	ENST00000566279	RAPGEF4	Q8WZA2	1011 aa		13.09	□□□□□ -0.31
TCF4-231	ENST00000566279	OVOS2	A0A0G2JMS6	1433 aa		13.08	□□□□□ -0.32
TCF4-231	ENST00000566279	TSR2	Q969E8	191 aa	Known RBP	13.08	□□□□□ -0.32
TCF4-231	ENST00000566279	PHACTR3	Q96KR7	559 aa		13.08	□□□□□ -0.32
TCF4-231	ENST00000566279	TNS2	Q63HR2	1409 aa		13.08	□□□□□ -0.32
TCF4-231	ENST00000566279	DLG5	Q8TDM6	1919 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	PDE3A	Q14432	1141 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	DDX54	Q8TDD1	881 aa	Known RBP	13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	PKD1L3	Q7Z443	1732 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	KDR	P35968	1356 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	TAT	P17735	454 aa	Predicted RBP	13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	NFE2L2	Q16236	605 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	KRT27	Q7Z3Y8	459 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	KDM2B	Q8NHM5	1336 aa		13.07	□□□□□ -0.32
TCF4-231	ENST00000566279	CT47B1	P0C2W7	299 aa	Predicted RBP	13.06	□□□□□ -0.32
TCF4-231	ENST00000566279	MARCH10	Q8NA82	808 aa	Predicted RBP	13.06	□□□□□ -0.32
TCF4-231	ENST00000566279	EXOC5	O00471	708 aa		13.06	□□□□□ -0.32
TCF4-231	ENST00000566279	NEFM	P07197	916 aa		13.06	□□□□□ -0.32
TCF4-231	ENST00000566279	EXOSC9	Q06265	439 aa	Known RBP	13.05	□□□□□ -0.32
TCF4-231	ENST00000566279	CANX	P27824	592 aa	Known RBP	13.04	□□□□□ -0.32
TCF4-231	ENST00000566279	ZCRB1	Q8TBF4	217 aa	Known RBP	13.04	□□□□□ -0.32
TCF4-231	ENST00000566279	PANK1	Q8TE04	598 aa		13.04	□□□□□ -0.32
TCF4-231	ENST00000566279	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.04	□□□□□ -0.32
TCF4-231	ENST00000566279	BCL2L13	Q9BXK5	485 aa		13.04	□□□□□ -0.32
TCF4-231	ENST00000566279	CYP27B1	O15528	508 aa		13.03	□□□□□ -0.32
TCF4-231	ENST00000566279	FRAT1	Q92837	279 aa	Predicted RBP	13.03	□□□□□ -0.32
TCF4-231	ENST00000566279	DOT1L	Q8TEK3	1739 aa		13.03	□□□□□ -0.32
TCF4-231	ENST00000566279	PTF1A	Q7RTS3	328 aa		13.03	□□□□□ -0.32
TCF4-231	ENST00000566279	TOGARAM1	Q9Y4F4	1720 aa		13.03	□□□□□ -0.32
TCF4-231	ENST00000566279	MTHFSD	Q2M296	383 aa	Known RBP	13.02	□□□□□ -0.33
TCF4-231	ENST00000566279	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.02	□□□□□ -0.33
TCF4-231	ENST00000566279	ACSBG1	Q96GR2	724 aa		13.02	□□□□□ -0.33
TCF4-231	ENST00000566279	TCERG1	O14776	1098 aa	Known RBP	13.01	□□□□□ -0.33
TCF4-231	ENST00000566279	TNN	Q9UQP3	1299 aa		13.01	□□□□□ -0.33
TCF4-231	ENST00000566279	COG6	Q9Y2V7	657 aa		13.01	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms