RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 PLSCR1O15162 318 aa18.71■□□□□ 0.59
VPS9D1-204ENST00000565023 ZCRB1Q8TBF4 217 aaKnown RBP18.71■□□□□ 0.59
VPS9D1-204ENST00000565023 RAPGEF4Q8WZA2 1011 aa18.71■□□□□ 0.59
VPS9D1-204ENST00000565023 KIF7Q2M1P5 1343 aa18.71■□□□□ 0.59
VPS9D1-204ENST00000565023 TATP17735 454 aaPredicted RBP18.7■□□□□ 0.58
VPS9D1-204ENST00000565023 DOT1LQ8TEK3 1739 aa18.7■□□□□ 0.58
VPS9D1-204ENST00000565023 SYTL4Q96C24 671 aaPredicted RBP18.7■□□□□ 0.58
VPS9D1-204ENST00000565023 KIF24Q5T7B8 1368 aa18.69■□□□□ 0.58
VPS9D1-204ENST00000565023 POLKQ9UBT6 870 aa18.69■□□□□ 0.58
VPS9D1-204ENST00000565023 KNSTRNQ9Y448 316 aa18.68■□□□□ 0.58
VPS9D1-204ENST00000565023 CNGB1Q14028 1251 aaPredicted RBP18.67■□□□□ 0.58
VPS9D1-204ENST00000565023 TXNRD1Q16881 649 aa18.67■□□□□ 0.58
VPS9D1-204ENST00000565023 MORC1Q86VD1 984 aa18.67■□□□□ 0.58
VPS9D1-204ENST00000565023 PROM2Q8N271 834 aa18.67■□□□□ 0.58
VPS9D1-204ENST00000565023 ANO8Q9HCE9 1232 aaPredicted RBP18.67■□□□□ 0.58
VPS9D1-204ENST00000565023 WASHC2AQ641Q2 1341 aa18.66■□□□□ 0.58
VPS9D1-204ENST00000565023 PRIM1P49642 420 aaKnown RBP18.64■□□□□ 0.57
VPS9D1-204ENST00000565023 EYA1Q99502 592 aa18.63■□□□□ 0.57
VPS9D1-204ENST00000565023 NSD2O96028 1365 aa18.63■□□□□ 0.57
VPS9D1-204ENST00000565023 EIF4A2Q14240 407 aaKnown RBP18.62■□□□□ 0.57
VPS9D1-204ENST00000565023 STK32BQ9NY57 414 aa18.62■□□□□ 0.57
VPS9D1-204ENST00000565023 PCDH11XQ9BZA7 1347 aa18.6■□□□□ 0.57
VPS9D1-204ENST00000565023 PCDH11YQ9BZA8 1340 aa18.6■□□□□ 0.57
VPS9D1-204ENST00000565023 YY1P25490 414 aa18.6■□□□□ 0.57
VPS9D1-204ENST00000565023 PKD1L3Q7Z443 1732 aa18.6■□□□□ 0.57
VPS9D1-204ENST00000565023 KCNQ4P56696 695 aa18.59■□□□□ 0.57
VPS9D1-204ENST00000565023 CC2D1BQ5T0F9 858 aaKnown RBP18.59■□□□□ 0.57
VPS9D1-204ENST00000565023 PDGFDQ9GZP0 370 aaPredicted RBP18.59■□□□□ 0.57
VPS9D1-204ENST00000565023 CYP27B1O15528 508 aa18.57■□□□□ 0.56
VPS9D1-204ENST00000565023 SLC15A2Q16348 729 aa18.57■□□□□ 0.56
VPS9D1-204ENST00000565023 AMER1Q5JTC6 1135 aaPredicted RBP18.57■□□□□ 0.56
VPS9D1-204ENST00000565023 ITGB4P16144 1822 aa18.56■□□□□ 0.56
VPS9D1-204ENST00000565023 CASZ1Q86V15 1759 aa18.56■□□□□ 0.56
VPS9D1-204ENST00000565023 LRRC4BQ9NT99 713 aa18.56■□□□□ 0.56
VPS9D1-204ENST00000565023 SPG7Q9UQ90 795 aa18.56■□□□□ 0.56
VPS9D1-204ENST00000565023 TOGARAM1Q9Y4F4 1720 aa18.56■□□□□ 0.56
VPS9D1-204ENST00000565023 NCAPD2Q15021 1401 aa18.56■□□□□ 0.56
VPS9D1-204ENST00000565023 ZBTB7AO95365 584 aa18.55■□□□□ 0.56
VPS9D1-204ENST00000565023 ZEB1P37275 1124 aaPredicted RBP18.55■□□□□ 0.56
VPS9D1-204ENST00000565023 MPRIPQ6WCQ1 1025 aa18.55■□□□□ 0.56
VPS9D1-204ENST00000565023 SPON1Q9HCB6 807 aa18.55■□□□□ 0.56
VPS9D1-204ENST00000565023 PPP1R1BQ9UD71 204 aaPredicted RBP18.54■□□□□ 0.56
VPS9D1-204ENST00000565023 UTRNP46939 3433 aa18.54■□□□□ 0.56
VPS9D1-204ENST00000565023 LY75O60449 1722 aa18.54■□□□□ 0.56
VPS9D1-204ENST00000565023 PAPPAQ13219 1627 aa18.53■□□□□ 0.56
VPS9D1-204ENST00000565023 ZNF827Q17R98 1081 aa18.53■□□□□ 0.56
VPS9D1-204ENST00000565023 ATF5Q9Y2D1 282 aaPredicted RBP18.53■□□□□ 0.56
VPS9D1-204ENST00000565023 IGSF1Q8N6C5 1336 aa18.52■□□□□ 0.56
VPS9D1-204ENST00000565023 PER1O15534 1290 aaPredicted RBP18.52■□□□□ 0.56
VPS9D1-204ENST00000565023 AEBP1Q8IUX7 1158 aa18.51■□□□□ 0.55
VPS9D1-204ENST00000565023 CCNL1Q9UK58 526 aaPredicted RBP18.51■□□□□ 0.55
VPS9D1-204ENST00000565023 MTHFSP49914 203 aa18.5■□□□□ 0.55
VPS9D1-204ENST00000565023 SLC27A3Q5K4L6 730 aa18.5■□□□□ 0.55
VPS9D1-204ENST00000565023 TUBGCP6Q96RT7 1819 aa18.49■□□□□ 0.55
VPS9D1-204ENST00000565023 PHKG2P15735 406 aa18.49■□□□□ 0.55
VPS9D1-204ENST00000565023 SULT6B1Q6IMI4 303 aa18.49■□□□□ 0.55
VPS9D1-204ENST00000565023 IFNL2Q8IZJ0 200 aa18.49■□□□□ 0.55
VPS9D1-204ENST00000565023 PALLDQ8WX93 1383 aa18.47■□□□□ 0.55
VPS9D1-204ENST00000565023 PLEKHO1Q53GL0 409 aaPredicted RBP18.47■□□□□ 0.55
VPS9D1-204ENST00000565023 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.47■□□□□ 0.55
VPS9D1-204ENST00000565023 IL13P35225 146 aa18.46■□□□□ 0.55
VPS9D1-204ENST00000565023 ZNF530Q6P9A1 599 aaPredicted RBP18.46■□□□□ 0.55
VPS9D1-204ENST00000565023 PIGBQ92521 554 aa18.46■□□□□ 0.55
VPS9D1-204ENST00000565023 AKT1S1Q96B36 256 aa18.46■□□□□ 0.55
VPS9D1-204ENST00000565023 TMOD3Q9NYL9 352 aa18.46■□□□□ 0.55
VPS9D1-204ENST00000565023 TFCP2L1Q9NZI6 479 aa18.46■□□□□ 0.55
VPS9D1-204ENST00000565023 C5P01031 1676 aa18.45■□□□□ 0.54
VPS9D1-204ENST00000565023 HMOX1P09601 288 aa18.45■□□□□ 0.54
VPS9D1-204ENST00000565023 NKX1-1Q15270 411 aaPredicted RBP18.45■□□□□ 0.54
VPS9D1-204ENST00000565023 TAF1LQ8IZX4 1826 aa18.44■□□□□ 0.54
VPS9D1-204ENST00000565023 MSH5O43196 834 aa18.44■□□□□ 0.54
VPS9D1-204ENST00000565023 SMARCC1Q92922 1105 aaPredicted RBP18.43■□□□□ 0.54
VPS9D1-204ENST00000565023 MTFR1LQ9H019 292 aa18.43■□□□□ 0.54
VPS9D1-204ENST00000565023 PNPLA7Q6ZV29 1317 aa18.43■□□□□ 0.54
VPS9D1-204ENST00000565023 QSER1Q2KHR3 1735 aa18.43■□□□□ 0.54
VPS9D1-204ENST00000565023 DIAPH1O60610 1272 aaKnown RBP18.42■□□□□ 0.54
VPS9D1-204ENST00000565023 C1orf141Q5JVX7 400 aa18.42■□□□□ 0.54
VPS9D1-204ENST00000565023 CEP350Q5VT06 3117 aa18.42■□□□□ 0.54
VPS9D1-204ENST00000565023 PTGER2P43116 358 aa18.41■□□□□ 0.54
VPS9D1-204ENST00000565023 AMOTQ4VCS5 1084 aa18.41■□□□□ 0.54
VPS9D1-204ENST00000565023 IFFO2Q5TF58 517 aa18.41■□□□□ 0.54
VPS9D1-204ENST00000565023 ASAP1Q9ULH1 1129 aa18.41■□□□□ 0.54
VPS9D1-204ENST00000565023 U2SURPO15042 1029 aaKnown RBP18.4■□□□□ 0.54
VPS9D1-204ENST00000565023 NPC1L1Q9UHC9 1359 aa18.4■□□□□ 0.54
VPS9D1-204ENST00000565023 HSP90AB1P08238 724 aaKnown RBP18.39■□□□□ 0.53
VPS9D1-204ENST00000565023 KLHL34Q8N239 644 aa18.39■□□□□ 0.53
VPS9D1-204ENST00000565023 KDM6AO15550 1401 aaPredicted RBP18.39■□□□□ 0.53
VPS9D1-204ENST00000565023 CABP4P57796 275 aa18.38■□□□□ 0.53
VPS9D1-204ENST00000565023 DCAF5Q96JK2 942 aa18.38■□□□□ 0.53
VPS9D1-204ENST00000565023 KDRP35968 1356 aa18.38■□□□□ 0.53
VPS9D1-204ENST00000565023 C4BP0C0L5 1744 aa18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 VIRMAQ69YN4 1812 aaKnown RBP18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 LOC102724428A0A0B4J2F2 783 aa18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 SIK1P57059 783 aa18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 SMIM5Q71RC9 77 aa18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 COL23A1Q86Y22 540 aaPredicted RBP18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 AK7Q96M32 723 aa18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 RBM42Q9BTD8 480 aaKnown RBP18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 ATG3Q9NT62 314 aa18.37■□□□□ 0.53
VPS9D1-204ENST00000565023 PHF14O94880 888 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms