RNA–Protein interactions for RNA: ENST00000564664.5

GTF3C1-204, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-204ENST00000564664 NSD3Q9BZ95 1437 aa16.84■□□□□ 0.29
GTF3C1-204ENST00000564664 CCER1Q8TC90 406 aaPredicted RBP16.83■□□□□ 0.28
GTF3C1-204ENST00000564664 BTAF1O14981 1849 aa16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 CASZ1Q86V15 1759 aa16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 ZBTB7AO95365 584 aa16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 SYTL4Q96C24 671 aaPredicted RBP16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 PDGFDQ9GZP0 370 aaPredicted RBP16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 LRRC4BQ9NT99 713 aa16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 KIF20BQ96Q89 1820 aa16.82■□□□□ 0.28
GTF3C1-204ENST00000564664 WASHC2AQ641Q2 1341 aa16.81■□□□□ 0.28
GTF3C1-204ENST00000564664 PTGER2P43116 358 aa16.81■□□□□ 0.28
GTF3C1-204ENST00000564664 SLC16A10Q8TF71 515 aa16.81■□□□□ 0.28
GTF3C1-204ENST00000564664 MEGF6O75095 1541 aa16.8■□□□□ 0.28
GTF3C1-204ENST00000564664 PCDH11XQ9BZA7 1347 aa16.8■□□□□ 0.28
GTF3C1-204ENST00000564664 PCDH11YQ9BZA8 1340 aa16.8■□□□□ 0.28
GTF3C1-204ENST00000564664 AKT1S1Q96B36 256 aa16.8■□□□□ 0.28
GTF3C1-204ENST00000564664 ATF5Q9Y2D1 282 aaPredicted RBP16.8■□□□□ 0.28
GTF3C1-204ENST00000564664 USHBP1Q8N6Y0 703 aa16.79■□□□□ 0.28
GTF3C1-204ENST00000564664 EMILIN1Q9Y6C2 1016 aa16.79■□□□□ 0.28
GTF3C1-204ENST00000564664 RGPD2P0DJD1 1756 aa16.79■□□□□ 0.28
GTF3C1-204ENST00000564664 MYOM1P52179 1685 aa16.78■□□□□ 0.28
GTF3C1-204ENST00000564664 NSD2O96028 1365 aa16.78■□□□□ 0.28
GTF3C1-204ENST00000564664 PPM1GO15355 546 aaPredicted RBP16.78■□□□□ 0.28
GTF3C1-204ENST00000564664 HSPA5P11021 654 aaKnown RBP16.78■□□□□ 0.28
GTF3C1-204ENST00000564664 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.78■□□□□ 0.285e-8■■■□□ 16
GTF3C1-204ENST00000564664 ZNF827Q17R98 1081 aa16.77■□□□□ 0.28
GTF3C1-204ENST00000564664 SGIP1Q9BQI5 828 aa16.77■□□□□ 0.28
GTF3C1-204ENST00000564664 POLR3GLQ9BT43 218 aa16.77■□□□□ 0.28
GTF3C1-204ENST00000564664 POLKQ9UBT6 870 aa16.77■□□□□ 0.28
GTF3C1-204ENST00000564664 PANK3Q9H999 370 aa16.76■□□□□ 0.27
GTF3C1-204ENST00000564664 TFCP2L1Q9NZI6 479 aa16.76■□□□□ 0.27
GTF3C1-204ENST00000564664 SPG7Q9UQ90 795 aa16.76■□□□□ 0.27
GTF3C1-204ENST00000564664 PAPPAQ13219 1627 aa16.76■□□□□ 0.27
GTF3C1-204ENST00000564664 NKX1-1Q15270 411 aaPredicted RBP16.75■□□□□ 0.27
GTF3C1-204ENST00000564664 ARXQ96QS3 562 aa16.75■□□□□ 0.27
GTF3C1-204ENST00000564664 CCNL1Q9UK58 526 aaPredicted RBP16.75■□□□□ 0.27
GTF3C1-204ENST00000564664 NCAPD2Q15021 1401 aa16.75■□□□□ 0.27
GTF3C1-204ENST00000564664 CYP27B1O15528 508 aa16.74■□□□□ 0.27
GTF3C1-204ENST00000564664 SMARCC1Q92922 1105 aaPredicted RBP16.74■□□□□ 0.27
GTF3C1-204ENST00000564664 EYA1Q99502 592 aa16.74■□□□□ 0.27
GTF3C1-204ENST00000564664 SYT17Q9BSW7 474 aa16.74■□□□□ 0.27
GTF3C1-204ENST00000564664 PLEKHG2Q9H7P9 1386 aa16.74■□□□□ 0.27
GTF3C1-204ENST00000564664 SHANK3Q9BYB0 1731 aa16.73■□□□□ 0.27
GTF3C1-204ENST00000564664 MAP2P11137 1827 aaKnown RBP16.73■□□□□ 0.27
GTF3C1-204ENST00000564664 POLD1P28340 1107 aa16.72■□□□□ 0.27
GTF3C1-204ENST00000564664 FHDC1Q9C0D6 1143 aaPredicted RBP16.72■□□□□ 0.27
GTF3C1-204ENST00000564664 LY75O60449 1722 aa16.71■□□□□ 0.27
GTF3C1-204ENST00000564664 DOT1LQ8TEK3 1739 aa16.71■□□□□ 0.27
GTF3C1-204ENST00000564664 YY1P25490 414 aa16.71■□□□□ 0.27
GTF3C1-204ENST00000564664 MPRIPQ6WCQ1 1025 aa16.71■□□□□ 0.27
GTF3C1-204ENST00000564664 FLAD1Q8NFF5 587 aa16.71■□□□□ 0.27
GTF3C1-204ENST00000564664 MAP3K5Q99683 1374 aa16.71■□□□□ 0.27
GTF3C1-204ENST00000564664 PNPLA7Q6ZV29 1317 aa16.7■□□□□ 0.26
GTF3C1-204ENST00000564664 ANKRD26Q9UPS8 1709 aa16.7■□□□□ 0.26
GTF3C1-204ENST00000564664 IFNL2Q8IZJ0 200 aa16.7■□□□□ 0.26
GTF3C1-204ENST00000564664 QSER1Q2KHR3 1735 aa16.7■□□□□ 0.26
GTF3C1-204ENST00000564664 KCNQ4P56696 695 aa16.69■□□□□ 0.26
GTF3C1-204ENST00000564664 EIF4A2Q14240 407 aaKnown RBP16.69■□□□□ 0.26
GTF3C1-204ENST00000564664 KNSTRNQ9Y448 316 aa16.69■□□□□ 0.26
GTF3C1-204ENST00000564664 TNNT2P45379 298 aaPredicted RBP16.68■□□□□ 0.26
GTF3C1-204ENST00000564664 MORC1Q86VD1 984 aa16.68■□□□□ 0.26
GTF3C1-204ENST00000564664 PALLDQ8WX93 1383 aa16.67■□□□□ 0.26
GTF3C1-204ENST00000564664 PIGBQ92521 554 aa16.67■□□□□ 0.26
GTF3C1-204ENST00000564664 HSP90AB1P08238 724 aaKnown RBP16.66■□□□□ 0.26
GTF3C1-204ENST00000564664 PHKG2P15735 406 aa16.66■□□□□ 0.26
GTF3C1-204ENST00000564664 PKD1L3Q7Z443 1732 aa16.66■□□□□ 0.26
GTF3C1-204ENST00000564664 IGSF1Q8N6C5 1336 aa16.66■□□□□ 0.26
GTF3C1-204ENST00000564664 AMOTQ4VCS5 1084 aa16.65■□□□□ 0.26
GTF3C1-204ENST00000564664 COL23A1Q86Y22 540 aaPredicted RBP16.65■□□□□ 0.26
GTF3C1-204ENST00000564664 TMOD3Q9NYL9 352 aa16.65■□□□□ 0.26
GTF3C1-204ENST00000564664 MSH5O43196 834 aa16.64■□□□□ 0.25
GTF3C1-204ENST00000564664 PLEKHO1Q53GL0 409 aaPredicted RBP16.64■□□□□ 0.25
GTF3C1-204ENST00000564664 COL24A1Q17RW2 1714 aa16.63■□□□□ 0.25
GTF3C1-204ENST00000564664 ERVV-2B6SEH9 535 aa16.63■□□□□ 0.25
GTF3C1-204ENST00000564664 LOC102724428A0A0B4J2F2 783 aa16.62■□□□□ 0.25
GTF3C1-204ENST00000564664 SIK1P57059 783 aa16.62■□□□□ 0.25
GTF3C1-204ENST00000564664 DCAF5Q96JK2 942 aa16.61■□□□□ 0.25
GTF3C1-204ENST00000564664 AK7Q96M32 723 aa16.61■□□□□ 0.25
GTF3C1-204ENST00000564664 ITGB4P16144 1822 aa16.61■□□□□ 0.25
GTF3C1-204ENST00000564664 AMER1Q5JTC6 1135 aaPredicted RBP16.6■□□□□ 0.25
GTF3C1-204ENST00000564664 GPR162Q16538 588 aa16.59■□□□□ 0.25
GTF3C1-204ENST00000564664 ASAP1Q9ULH1 1129 aa16.59■□□□□ 0.25
GTF3C1-204ENST00000564664 KIF7Q2M1P5 1343 aa16.59■□□□□ 0.25
GTF3C1-204ENST00000564664 SSFA2P28290 1259 aa16.58■□□□□ 0.24
GTF3C1-204ENST00000564664 ATG3Q9NT62 314 aa16.58■□□□□ 0.24
GTF3C1-204ENST00000564664 C5P01031 1676 aa16.58■□□□□ 0.24
GTF3C1-204ENST00000564664 TUBGCP6Q96RT7 1819 aa16.58■□□□□ 0.24
GTF3C1-204ENST00000564664 TOGARAM1Q9Y4F4 1720 aa16.57■□□□□ 0.24
GTF3C1-204ENST00000564664 PER1O15534 1290 aaPredicted RBP16.57■□□□□ 0.24
GTF3C1-204ENST00000564664 IL13P35225 146 aa16.57■□□□□ 0.24
GTF3C1-204ENST00000564664 ATP6V1AP38606 617 aa16.57■□□□□ 0.24
GTF3C1-204ENST00000564664 CD2APQ9Y5K6 639 aa16.57■□□□□ 0.24
GTF3C1-204ENST00000564664 TAF1LQ8IZX4 1826 aa16.56■□□□□ 0.24
GTF3C1-204ENST00000564664 MTHFSP49914 203 aa16.56■□□□□ 0.24
GTF3C1-204ENST00000564664 C1orf141Q5JVX7 400 aa16.56■□□□□ 0.24
GTF3C1-204ENST00000564664 SULT6B1Q6IMI4 303 aa16.56■□□□□ 0.24
GTF3C1-204ENST00000564664 ZNF530Q6P9A1 599 aaPredicted RBP16.56■□□□□ 0.24
GTF3C1-204ENST00000564664 KLHL34Q8N239 644 aa16.56■□□□□ 0.24
GTF3C1-204ENST00000564664 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.55■□□□□ 0.24
GTF3C1-204ENST00000564664 GRIN3BO60391 1043 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms