RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TATP17735 454 aaPredicted RBP18.24■□□□□ 0.51
CLK3-216ENST00000564468 BCL11BQ9C0K0 894 aaPredicted RBP18.24■□□□□ 0.51
CLK3-216ENST00000564468 RGPD3A6NKT7 1758 aaPredicted RBP18.23■□□□□ 0.51
CLK3-216ENST00000564468 RGPD4Q7Z3J3 1758 aa18.23■□□□□ 0.51
CLK3-216ENST00000564468 ZCRB1Q8TBF4 217 aaKnown RBP18.23■□□□□ 0.51
CLK3-216ENST00000564468 NPC1L1Q9UHC9 1359 aa18.22■□□□□ 0.51
CLK3-216ENST00000564468 USHBP1Q8N6Y0 703 aa18.21■□□□□ 0.51
CLK3-216ENST00000564468 DDX54Q8TDD1 881 aaKnown RBP18.21■□□□□ 0.51
CLK3-216ENST00000564468 NHSQ6T4R5 1651 aa18.21■□□□□ 0.51
CLK3-216ENST00000564468 MEGF6O75095 1541 aa18.2■□□□□ 0.5
CLK3-216ENST00000564468 PLSCR1O15162 318 aa18.2■□□□□ 0.5
CLK3-216ENST00000564468 KCNQ2O43526 872 aa18.2■□□□□ 0.5
CLK3-216ENST00000564468 SHANK3Q9BYB0 1731 aa18.2■□□□□ 0.5
CLK3-216ENST00000564468 RREB1Q92766 1687 aa18.19■□□□□ 0.5
CLK3-216ENST00000564468 NCAPD2Q15021 1401 aa18.18■□□□□ 0.5
CLK3-216ENST00000564468 EIF4A2Q14240 407 aaKnown RBP18.18■□□□□ 0.5
CLK3-216ENST00000564468 CC2D1BQ5T0F9 858 aaKnown RBP18.18■□□□□ 0.5
CLK3-216ENST00000564468 EYA1Q99502 592 aa18.18■□□□□ 0.5
CLK3-216ENST00000564468 BTAF1O14981 1849 aa18.16■□□□□ 0.5
CLK3-216ENST00000564468 PKD1L3Q7Z443 1732 aa18.16■□□□□ 0.5
CLK3-216ENST00000564468 ZEB1P37275 1124 aaPredicted RBP18.16■□□□□ 0.5
CLK3-216ENST00000564468 ACSBG1Q96GR2 724 aa18.16■□□□□ 0.5
CLK3-216ENST00000564468 PCDH11XQ9BZA7 1347 aa18.16■□□□□ 0.5
CLK3-216ENST00000564468 PCDH11YQ9BZA8 1340 aa18.16■□□□□ 0.5
CLK3-216ENST00000564468 NUP188Q5SRE5 1749 aa18.15■□□□□ 0.5
CLK3-216ENST00000564468 SPG7Q9UQ90 795 aa18.15■□□□□ 0.5
CLK3-216ENST00000564468 PLEKHG2Q9H7P9 1386 aa18.15■□□□□ 0.5
CLK3-216ENST00000564468 DOT1LQ8TEK3 1739 aa18.15■□□□□ 0.5
CLK3-216ENST00000564468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.14■□□□□ 0.49
CLK3-216ENST00000564468 IGSF1Q8N6C5 1336 aa18.14■□□□□ 0.49
CLK3-216ENST00000564468 MTHFSP49914 203 aa18.13■□□□□ 0.49
CLK3-216ENST00000564468 PTF1AQ7RTS3 328 aa18.13■□□□□ 0.49
CLK3-216ENST00000564468 CNGB1Q14028 1251 aaPredicted RBP18.1■□□□□ 0.49
CLK3-216ENST00000564468 SYTL4Q96C24 671 aaPredicted RBP18.1■□□□□ 0.49
CLK3-216ENST00000564468 PRIM1P49642 420 aaKnown RBP18.09■□□□□ 0.49
CLK3-216ENST00000564468 ITGB4P16144 1822 aa18.09■□□□□ 0.49
CLK3-216ENST00000564468 CYP27B1O15528 508 aa18.08■□□□□ 0.48
CLK3-216ENST00000564468 IL13P35225 146 aa18.08■□□□□ 0.48
CLK3-216ENST00000564468 TXNRD1Q16881 649 aa18.08■□□□□ 0.48
CLK3-216ENST00000564468 DIAPH1O60610 1272 aaKnown RBP18.07■□□□□ 0.48
CLK3-216ENST00000564468 AMOTQ4VCS5 1084 aa18.07■□□□□ 0.48
CLK3-216ENST00000564468 PLEKHO1Q53GL0 409 aaPredicted RBP18.07■□□□□ 0.48
CLK3-216ENST00000564468 IFNL2Q8IZJ0 200 aa18.07■□□□□ 0.48
CLK3-216ENST00000564468 NKX1-1Q15270 411 aaPredicted RBP18.06■□□□□ 0.48
CLK3-216ENST00000564468 PROM2Q8N271 834 aa18.06■□□□□ 0.48
CLK3-216ENST00000564468 UTRNP46939 3433 aa18.05■□□□□ 0.48
CLK3-216ENST00000564468 HMGB2P26583 209 aaKnown RBP18.05■□□□□ 0.48
CLK3-216ENST00000564468 SULT6B1Q6IMI4 303 aa18.05■□□□□ 0.48
CLK3-216ENST00000564468 CFAP53Q96M91 514 aa18.05■□□□□ 0.48
CLK3-216ENST00000564468 KDRP35968 1356 aa18.04■□□□□ 0.48
CLK3-216ENST00000564468 LY75O60449 1722 aa18.04■□□□□ 0.48
CLK3-216ENST00000564468 HSP90AB1P08238 724 aaKnown RBP18.04■□□□□ 0.48
CLK3-216ENST00000564468 SLC27A3Q5K4L6 730 aa18.04■□□□□ 0.48
CLK3-216ENST00000564468 PHKG2P15735 406 aa18.03■□□□□ 0.48
CLK3-216ENST00000564468 STK32BQ9NY57 414 aa18.02■□□□□ 0.48
CLK3-216ENST00000564468 TOGARAM1Q9Y4F4 1720 aa18.02■□□□□ 0.48
CLK3-216ENST00000564468 ZBTB7AO95365 584 aa18.01■□□□□ 0.47
CLK3-216ENST00000564468 C1orf141Q5JVX7 400 aa18.01■□□□□ 0.47
CLK3-216ENST00000564468 MPRIPQ6WCQ1 1025 aa18.01■□□□□ 0.47
CLK3-216ENST00000564468 AEBP1Q8IUX7 1158 aa18.01■□□□□ 0.47
CLK3-216ENST00000564468 ZNF530Q6P9A1 599 aaPredicted RBP18■□□□□ 0.47
CLK3-216ENST00000564468 SMARCC1Q92922 1105 aaPredicted RBP18■□□□□ 0.47
CLK3-216ENST00000564468 ANO8Q9HCE9 1232 aaPredicted RBP18■□□□□ 0.47
CLK3-216ENST00000564468 PPP2R1AP30153 589 aa17.99■□□□□ 0.47
CLK3-216ENST00000564468 DCAF5Q96JK2 942 aa17.99■□□□□ 0.47
CLK3-216ENST00000564468 NUDCQ9Y266 331 aa17.99■□□□□ 0.47
CLK3-216ENST00000564468 COL3A1P02461 1466 aaPredicted RBP17.99■□□□□ 0.47
CLK3-216ENST00000564468 VIRMAQ69YN4 1812 aaKnown RBP17.98■□□□□ 0.47
CLK3-216ENST00000564468 HMOX1P09601 288 aa17.98■□□□□ 0.47
CLK3-216ENST00000564468 SLC15A2Q16348 729 aa17.98■□□□□ 0.47
CLK3-216ENST00000564468 ZNF784Q8NCA9 323 aaPredicted RBP17.98■□□□□ 0.47
CLK3-216ENST00000564468 TMOD3Q9NYL9 352 aa17.98■□□□□ 0.47
CLK3-216ENST00000564468 ATF5Q9Y2D1 282 aaPredicted RBP17.98■□□□□ 0.47
CLK3-216ENST00000564468 ERVV-2B6SEH9 535 aa17.97■□□□□ 0.47
CLK3-216ENST00000564468 U2SURPO15042 1029 aaKnown RBP17.97■□□□□ 0.47
CLK3-216ENST00000564468 DDX10Q13206 875 aaKnown RBP17.97■□□□□ 0.47
CLK3-216ENST00000564468 PAPPAQ13219 1627 aa17.97■□□□□ 0.47
CLK3-216ENST00000564468 PTGER2P43116 358 aa17.96■□□□□ 0.47
CLK3-216ENST00000564468 PIGBQ92521 554 aa17.96■□□□□ 0.47
CLK3-216ENST00000564468 MTFR1LQ9H019 292 aa17.96■□□□□ 0.47
CLK3-216ENST00000564468 LRRC4BQ9NT99 713 aa17.96■□□□□ 0.47
CLK3-216ENST00000564468 CCNL1Q9UK58 526 aaPredicted RBP17.96■□□□□ 0.47
CLK3-216ENST00000564468 SCN11AQ9UI33 1791 aa17.96■□□□□ 0.47
CLK3-216ENST00000564468 QSER1Q2KHR3 1735 aa17.95■□□□□ 0.46
CLK3-216ENST00000564468 AKAP4Q5JQC9 854 aa17.95■□□□□ 0.46
CLK3-216ENST00000564468 SYT17Q9BSW7 474 aa17.95■□□□□ 0.46
CLK3-216ENST00000564468 PDGFDQ9GZP0 370 aaPredicted RBP17.95■□□□□ 0.46
CLK3-216ENST00000564468 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
CLK3-216ENST00000564468 PALLDQ8WX93 1383 aa17.94■□□□□ 0.46
CLK3-216ENST00000564468 RALBP1Q15311 655 aa17.94■□□□□ 0.46
CLK3-216ENST00000564468 FHDC1Q9C0D6 1143 aaPredicted RBP17.94■□□□□ 0.46
CLK3-216ENST00000564468 CASZ1Q86V15 1759 aa17.94■□□□□ 0.46
CLK3-216ENST00000564468 C5P01031 1676 aa17.93■□□□□ 0.46
CLK3-216ENST00000564468 CABP4P57796 275 aa17.92■□□□□ 0.46
CLK3-216ENST00000564468 KDM6AO15550 1401 aaPredicted RBP17.9■□□□□ 0.46
CLK3-216ENST00000564468 SENP3-EIF4A1A0A087X0R7 540 aa17.9■□□□□ 0.46
CLK3-216ENST00000564468 GAS2L2Q8NHY3 880 aa17.9■□□□□ 0.46
CLK3-216ENST00000564468 AKT1S1Q96B36 256 aa17.9■□□□□ 0.46
CLK3-216ENST00000564468 ARXQ96QS3 562 aa17.9■□□□□ 0.46
CLK3-216ENST00000564468 TUBGCP6Q96RT7 1819 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms