RNA–Protein interactions for RNA: ENST00000563835.1

PTPN9-203, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-203ENST00000563835 KIF7Q2M1P5 1343 aa12.75□□□□□ -0.37
PTPN9-203ENST00000563835 KIF24Q5T7B8 1368 aa12.75□□□□□ -0.37
PTPN9-203ENST00000563835 PANK3Q9H999 370 aa12.75□□□□□ -0.37
PTPN9-203ENST00000563835 ANO8Q9HCE9 1232 aaPredicted RBP12.75□□□□□ -0.37
PTPN9-203ENST00000563835 NCAPD2Q15021 1401 aa12.74□□□□□ -0.37
PTPN9-203ENST00000563835 PPM1GO15355 546 aaPredicted RBP12.74□□□□□ -0.37
PTPN9-203ENST00000563835 TNNT2P45379 298 aaPredicted RBP12.74□□□□□ -0.37
PTPN9-203ENST00000563835 DDX54Q8TDD1 881 aaKnown RBP12.74□□□□□ -0.37
PTPN9-203ENST00000563835 TUBGCP6Q96RT7 1819 aa12.74□□□□□ -0.37
PTPN9-203ENST00000563835 LY75O60449 1722 aa12.74□□□□□ -0.37
PTPN9-203ENST00000563835 PLSCR1O15162 318 aa12.73□□□□□ -0.37
PTPN9-203ENST00000563835 PROM2Q8N271 834 aa12.73□□□□□ -0.37
PTPN9-203ENST00000563835 NSD2O96028 1365 aa12.72□□□□□ -0.37
PTPN9-203ENST00000563835 ITGB4P16144 1822 aa12.72□□□□□ -0.37
PTPN9-203ENST00000563835 TXNRD1Q16881 649 aa12.71□□□□□ -0.37
PTPN9-203ENST00000563835 POLKQ9UBT6 870 aa12.71□□□□□ -0.37
PTPN9-203ENST00000563835 ZCRB1Q8TBF4 217 aaKnown RBP12.7□□□□□ -0.38
PTPN9-203ENST00000563835 WASHC2AQ641Q2 1341 aa12.69□□□□□ -0.38
PTPN9-203ENST00000563835 NBPF14Q5TI25 921 aa12.69□□□□□ -0.38
PTPN9-203ENST00000563835 RAPGEF4Q8WZA2 1011 aa12.69□□□□□ -0.38
PTPN9-203ENST00000563835 PDGFDQ9GZP0 370 aaPredicted RBP12.69□□□□□ -0.38
PTPN9-203ENST00000563835 TATP17735 454 aaPredicted RBP12.68□□□□□ -0.38
PTPN9-203ENST00000563835 QSER1Q2KHR3 1735 aa12.68□□□□□ -0.38
PTPN9-203ENST00000563835 EIF4A2Q14240 407 aaKnown RBP12.67□□□□□ -0.38
PTPN9-203ENST00000563835 SYTL4Q96C24 671 aaPredicted RBP12.67□□□□□ -0.38
PTPN9-203ENST00000563835 EYA1Q99502 592 aa12.67□□□□□ -0.38
PTPN9-203ENST00000563835 C5P01031 1676 aa12.67□□□□□ -0.38
PTPN9-203ENST00000563835 TAF1LQ8IZX4 1826 aa12.67□□□□□ -0.38
PTPN9-203ENST00000563835 PCDH11XQ9BZA7 1347 aa12.66□□□□□ -0.38
PTPN9-203ENST00000563835 PCDH11YQ9BZA8 1340 aa12.66□□□□□ -0.38
PTPN9-203ENST00000563835 PRIM1P49642 420 aaKnown RBP12.66□□□□□ -0.38
PTPN9-203ENST00000563835 LRRC4BQ9NT99 713 aa12.66□□□□□ -0.38
PTPN9-203ENST00000563835 CYP27B1O15528 508 aa12.65□□□□□ -0.38
PTPN9-203ENST00000563835 KCNQ4P56696 695 aa12.65□□□□□ -0.38
PTPN9-203ENST00000563835 ZNF827Q17R98 1081 aa12.65□□□□□ -0.38
PTPN9-203ENST00000563835 AMER1Q5JTC6 1135 aaPredicted RBP12.65□□□□□ -0.38
PTPN9-203ENST00000563835 MORC1Q86VD1 984 aa12.64□□□□□ -0.39
PTPN9-203ENST00000563835 KNSTRNQ9Y448 316 aa12.64□□□□□ -0.39
PTPN9-203ENST00000563835 IGSF1Q8N6C5 1336 aa12.63□□□□□ -0.39
PTPN9-203ENST00000563835 SLC15A2Q16348 729 aa12.63□□□□□ -0.39
PTPN9-203ENST00000563835 STK32BQ9NY57 414 aa12.63□□□□□ -0.39
PTPN9-203ENST00000563835 VIRMAQ69YN4 1812 aaKnown RBP12.62□□□□□ -0.39
PTPN9-203ENST00000563835 ZBTB7AO95365 584 aa12.62□□□□□ -0.39
PTPN9-203ENST00000563835 PER1O15534 1290 aaPredicted RBP12.61□□□□□ -0.39
PTPN9-203ENST00000563835 CNGB1Q14028 1251 aaPredicted RBP12.61□□□□□ -0.39
PTPN9-203ENST00000563835 CC2D1BQ5T0F9 858 aaKnown RBP12.61□□□□□ -0.39
PTPN9-203ENST00000563835 AEBP1Q8IUX7 1158 aa12.61□□□□□ -0.39
PTPN9-203ENST00000563835 COL24A1Q17RW2 1714 aa12.61□□□□□ -0.39
PTPN9-203ENST00000563835 C4BP0C0L5 1744 aa12.6□□□□□ -0.39
PTPN9-203ENST00000563835 SPON1Q9HCB6 807 aa12.6□□□□□ -0.39
PTPN9-203ENST00000563835 COL3A1P02461 1466 aaPredicted RBP12.59□□□□□ -0.39
PTPN9-203ENST00000563835 PALLDQ8WX93 1383 aa12.59□□□□□ -0.39
PTPN9-203ENST00000563835 AKT1S1Q96B36 256 aa12.59□□□□□ -0.39
PTPN9-203ENST00000563835 SPG7Q9UQ90 795 aa12.59□□□□□ -0.39
PTPN9-203ENST00000563835 KDM6AO15550 1401 aaPredicted RBP12.58□□□□□ -0.4
PTPN9-203ENST00000563835 PHKG2P15735 406 aa12.58□□□□□ -0.4
PTPN9-203ENST00000563835 SLC27A3Q5K4L6 730 aa12.58□□□□□ -0.4
PTPN9-203ENST00000563835 MPRIPQ6WCQ1 1025 aa12.58□□□□□ -0.4
PTPN9-203ENST00000563835 UBR3Q6ZT12 1888 aa12.58□□□□□ -0.4
PTPN9-203ENST00000563835 CCNL1Q9UK58 526 aaPredicted RBP12.58□□□□□ -0.4
PTPN9-203ENST00000563835 ATF5Q9Y2D1 282 aaPredicted RBP12.58□□□□□ -0.4
PTPN9-203ENST00000563835 SCN11AQ9UI33 1791 aa12.58□□□□□ -0.4
PTPN9-203ENST00000563835 IL13P35225 146 aa12.57□□□□□ -0.4
PTPN9-203ENST00000563835 PTGER2P43116 358 aa12.57□□□□□ -0.4
PTPN9-203ENST00000563835 NKX1-1Q15270 411 aaPredicted RBP12.57□□□□□ -0.4
PTPN9-203ENST00000563835 PNPLA7Q6ZV29 1317 aa12.57□□□□□ -0.4
PTPN9-203ENST00000563835 KDRP35968 1356 aa12.56□□□□□ -0.4
PTPN9-203ENST00000563835 PLEKHG2Q9H7P9 1386 aa12.56□□□□□ -0.4
PTPN9-203ENST00000563835 MTHFSP49914 203 aa12.56□□□□□ -0.4
PTPN9-203ENST00000563835 PIGBQ92521 554 aa12.56□□□□□ -0.4
PTPN9-203ENST00000563835 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.56□□□□□ -0.4
PTPN9-203ENST00000563835 PPP1R1BQ9UD71 204 aaPredicted RBP12.56□□□□□ -0.4
PTPN9-203ENST00000563835 COL5A3P25940 1745 aaPredicted RBP12.56□□□□□ -0.4
PTPN9-203ENST00000563835 SULT6B1Q6IMI4 303 aa12.55□□□□□ -0.4
PTPN9-203ENST00000563835 IFNL2Q8IZJ0 200 aa12.55□□□□□ -0.4
PTPN9-203ENST00000563835 NPC1L1Q9UHC9 1359 aa12.55□□□□□ -0.4
PTPN9-203ENST00000563835 ZNF530Q6P9A1 599 aaPredicted RBP12.54□□□□□ -0.4
PTPN9-203ENST00000563835 SGIP1Q9BQI5 828 aa12.54□□□□□ -0.4
PTPN9-203ENST00000563835 MTFR1LQ9H019 292 aa12.54□□□□□ -0.4
PTPN9-203ENST00000563835 TMOD3Q9NYL9 352 aa12.53□□□□□ -0.4
PTPN9-203ENST00000563835 TFCP2L1Q9NZI6 479 aa12.53□□□□□ -0.4
PTPN9-203ENST00000563835 ZNF831Q5JPB2 1677 aa12.53□□□□□ -0.4
PTPN9-203ENST00000563835 ADAMTS7Q9UKP4 1686 aa12.53□□□□□ -0.4
PTPN9-203ENST00000563835 TJP1Q07157 1748 aa12.53□□□□□ -0.4
PTPN9-203ENST00000563835 HMOX1P09601 288 aa12.52□□□□□ -0.41
PTPN9-203ENST00000563835 AMIGO3Q86WK7 504 aa12.52□□□□□ -0.41
PTPN9-203ENST00000563835 ASAP1Q9ULH1 1129 aa12.52□□□□□ -0.41
PTPN9-203ENST00000563835 PLEKHO1Q53GL0 409 aaPredicted RBP12.51□□□□□ -0.41
PTPN9-203ENST00000563835 SMIM5Q71RC9 77 aa12.51□□□□□ -0.41
PTPN9-203ENST00000563835 MRC1P22897 1456 aa12.51□□□□□ -0.41
PTPN9-203ENST00000563835 C4AP0C0L4 1744 aa12.51□□□□□ -0.41
PTPN9-203ENST00000563835 LINC00116Q8NCU8 138 aa12.5□□□□□ -0.41
PTPN9-203ENST00000563835 SMARCC1Q92922 1105 aaPredicted RBP12.5□□□□□ -0.41
PTPN9-203ENST00000563835 FHDC1Q9C0D6 1143 aaPredicted RBP12.5□□□□□ -0.41
PTPN9-203ENST00000563835 ATG3Q9NT62 314 aa12.5□□□□□ -0.41
PTPN9-203ENST00000563835 CICQ96RK0 1608 aaPredicted RBP12.5□□□□□ -0.41
PTPN9-203ENST00000563835 LOC102724428A0A0B4J2F2 783 aa12.49□□□□□ -0.41
PTPN9-203ENST00000563835 DIAPH1O60610 1272 aaKnown RBP12.49□□□□□ -0.41
PTPN9-203ENST00000563835 SIK1P57059 783 aa12.49□□□□□ -0.41
PTPN9-203ENST00000563835 ITPK1Q13572 414 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms