RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 KIAA1551Q9HCM1 1747 aa14.97□□□□□ -0.01
SF3B3-204ENST00000563739 UBR3Q6ZT12 1888 aa14.97□□□□□ -0.01
SF3B3-204ENST00000563739 SLC27A3Q5K4L6 730 aa14.96□□□□□ -0.01
SF3B3-204ENST00000563739 MAP2P11137 1827 aaKnown RBP14.95□□□□□ -0.02
SF3B3-204ENST00000563739 SIN3AQ96ST3 1273 aa14.95□□□□□ -0.02
SF3B3-204ENST00000563739 CICQ96RK0 1608 aaPredicted RBP14.95□□□□□ -0.02
SF3B3-204ENST00000563739 ITGB4P16144 1822 aa14.94□□□□□ -0.02
SF3B3-204ENST00000563739 SLC34A2O95436 690 aa14.94□□□□□ -0.02
SF3B3-204ENST00000563739 KLHL34Q8N239 644 aa14.94□□□□□ -0.02
SF3B3-204ENST00000563739 C4BP0C0L5 1744 aa14.93□□□□□ -0.02
SF3B3-204ENST00000563739 AMIGO3Q86WK7 504 aa14.93□□□□□ -0.02
SF3B3-204ENST00000563739 COL23A1Q86Y22 540 aaPredicted RBP14.93□□□□□ -0.02
SF3B3-204ENST00000563739 PKD1L3Q7Z443 1732 aa14.92□□□□□ -0.02
SF3B3-204ENST00000563739 FBLN1P23142 703 aa14.92□□□□□ -0.02
SF3B3-204ENST00000563739 PRIM1P49642 420 aaKnown RBP14.92□□□□□ -0.02
SF3B3-204ENST00000563739 IP6K1Q92551 441 aa14.92□□□□□ -0.02
SF3B3-204ENST00000563739 SLC12A5Q9H2X9 1139 aa14.92□□□□□ -0.02
SF3B3-204ENST00000563739 MAP3K19Q56UN5 1328 aa14.92□□□□□ -0.02
SF3B3-204ENST00000563739 POLD1P28340 1107 aa14.91□□□□□ -0.02
SF3B3-204ENST00000563739 PELP1Q8IZL8 1130 aaKnown RBP14.91□□□□□ -0.02
SF3B3-204ENST00000563739 DDX54Q8TDD1 881 aaKnown RBP14.91□□□□□ -0.02
SF3B3-204ENST00000563739 MSL1Q68DK7 614 aa14.9□□□□□ -0.02
SF3B3-204ENST00000563739 TFCP2L1Q9NZI6 479 aa14.9□□□□□ -0.02
SF3B3-204ENST00000563739 KIF13BQ9NQT8 1826 aa14.89□□□□□ -0.03
SF3B3-204ENST00000563739 HOXC9P31274 260 aa14.88□□□□□ -0.03
SF3B3-204ENST00000563739 PIAS4Q8N2W9 510 aaPredicted RBP14.87□□□□□ -0.03
SF3B3-204ENST00000563739 LTV1Q96GA3 475 aaPredicted RBP14.87□□□□□ -0.03
SF3B3-204ENST00000563739 CCNL1Q9UK58 526 aaPredicted RBP14.87□□□□□ -0.03
SF3B3-204ENST00000563739 ANKRD26Q9UPS8 1709 aa14.86□□□□□ -0.03
SF3B3-204ENST00000563739 RTL1A6NKG5 1358 aa14.85□□□□□ -0.03
SF3B3-204ENST00000563739 KIF20BQ96Q89 1820 aa14.85□□□□□ -0.03
SF3B3-204ENST00000563739 NCAPD2Q15021 1401 aa14.85□□□□□ -0.03
SF3B3-204ENST00000563739 BRCA1P38398 1863 aaKnown RBP14.85□□□□□ -0.03
SF3B3-204ENST00000563739 SMIM5Q71RC9 77 aa14.85□□□□□ -0.03
SF3B3-204ENST00000563739 SYTL4Q96C24 671 aaPredicted RBP14.85□□□□□ -0.03
SF3B3-204ENST00000563739 GRIN3BO60391 1043 aa14.84□□□□□ -0.03
SF3B3-204ENST00000563739 NBPF6Q5VWK0 638 aa14.84□□□□□ -0.03
SF3B3-204ENST00000563739 USHBP1Q8N6Y0 703 aa14.84□□□□□ -0.03
SF3B3-204ENST00000563739 ZCRB1Q8TBF4 217 aaKnown RBP14.84□□□□□ -0.03
SF3B3-204ENST00000563739 NBPF4Q96M43 638 aa14.84□□□□□ -0.03
SF3B3-204ENST00000563739 TESK2Q96S53 571 aa14.84□□□□□ -0.03
SF3B3-204ENST00000563739 TMC1Q8TDI8 760 aa14.83□□□□□ -0.04
SF3B3-204ENST00000563739 PALLDQ8WX93 1383 aa14.83□□□□□ -0.04
SF3B3-204ENST00000563739 USP47Q96K76 1375 aa14.83□□□□□ -0.04
SF3B3-204ENST00000563739 N4BP2Q86UW6 1770 aaPredicted RBP14.83□□□□□ -0.04
SF3B3-204ENST00000563739 KIF3CO14782 793 aa14.82□□□□□ -0.04
SF3B3-204ENST00000563739 HSPA6P17066 643 aa14.82□□□□□ -0.04
SF3B3-204ENST00000563739 HDGFL2Q7Z4V5 671 aaPredicted RBP14.82□□□□□ -0.04
SF3B3-204ENST00000563739 CD2APQ9Y5K6 639 aa14.82□□□□□ -0.04
SF3B3-204ENST00000563739 CAPN15O75808 1086 aa14.81□□□□□ -0.04
SF3B3-204ENST00000563739 CYP27B1O15528 508 aa14.8□□□□□ -0.04
SF3B3-204ENST00000563739 PUS7Q96PZ0 661 aaKnown RBP14.8□□□□□ -0.04
SF3B3-204ENST00000563739 PXDNLA1KZ92 1463 aa14.8□□□□□ -0.04
SF3B3-204ENST00000563739 RRS1Q15050 365 aaKnown RBP14.79□□□□□ -0.04
SF3B3-204ENST00000563739 IGSF1Q8N6C5 1336 aa14.79□□□□□ -0.04
SF3B3-204ENST00000563739 WDR90Q96KV7 1748 aa14.79□□□□□ -0.04
SF3B3-204ENST00000563739 CARD11Q9BXL7 1154 aa14.79□□□□□ -0.04
SF3B3-204ENST00000563739 COL5A3P25940 1745 aaPredicted RBP14.78□□□□□ -0.04
SF3B3-204ENST00000563739 NEUROD1Q13562 356 aa14.78□□□□□ -0.04
SF3B3-204ENST00000563739 ZNF526Q8TF50 670 aaPredicted RBP14.78□□□□□ -0.04
SF3B3-204ENST00000563739 GPBP1L1Q9HC44 474 aaPredicted RBP14.78□□□□□ -0.04
SF3B3-204ENST00000563739 TERF2IPQ9NYB0 399 aa14.78□□□□□ -0.04
SF3B3-204ENST00000563739 WWC3Q9ULE0 1092 aa14.78□□□□□ -0.04
SF3B3-204ENST00000563739 C4AP0C0L4 1744 aa14.78□□□□□ -0.04
SF3B3-204ENST00000563739 MSH5O43196 834 aa14.77□□□□□ -0.05
SF3B3-204ENST00000563739 INSRP06213 1382 aa14.76□□□□□ -0.05
SF3B3-204ENST00000563739 ZNF831Q5JPB2 1677 aa14.76□□□□□ -0.05
SF3B3-204ENST00000563739 CGNL1Q0VF96 1302 aa14.75□□□□□ -0.05
SF3B3-204ENST00000563739 AMPHP49418 695 aa14.75□□□□□ -0.05
SF3B3-204ENST00000563739 LINC00116Q8NCU8 138 aa14.75□□□□□ -0.05
SF3B3-204ENST00000563739 COG3Q96JB2 828 aa14.75□□□□□ -0.05
SF3B3-204ENST00000563739 KDRP35968 1356 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 PCDH11XQ9BZA7 1347 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 PCDH11YQ9BZA8 1340 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 ARFGEF1Q9Y6D6 1849 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 FYB1O15117 783 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 HSP90AB2PQ58FF8 381 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 DNAJC5GQ8N7S2 189 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 C10orf71Q711Q0 1435 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 NSD3Q9BZ95 1437 aa14.74□□□□□ -0.05
SF3B3-204ENST00000563739 PIGBQ92521 554 aa14.73□□□□□ -0.05
SF3B3-204ENST00000563739 GGNBP2Q9H3C7 697 aa14.73□□□□□ -0.05
SF3B3-204ENST00000563739 MYH14Q7Z406 1995 aaKnown RBP14.73□□□□□ -0.05
SF3B3-204ENST00000563739 ADAMTS7Q9UKP4 1686 aa14.72□□□□□ -0.05
SF3B3-204ENST00000563739 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.72□□□□□ -0.05
SF3B3-204ENST00000563739 ITPK1Q13572 414 aa14.72□□□□□ -0.05
SF3B3-204ENST00000563739 FLT4P35916 1363 aa14.72□□□□□ -0.05
SF3B3-204ENST00000563739 ST20-MTHFSA0A0A6YYL1 179 aa14.71□□□□□ -0.05
SF3B3-204ENST00000563739 PHF14O94880 888 aa14.71□□□□□ -0.05
SF3B3-204ENST00000563739 NKX1-1Q15270 411 aaPredicted RBP14.71□□□□□ -0.05
SF3B3-204ENST00000563739 MPRIPQ6WCQ1 1025 aa14.71□□□□□ -0.05
SF3B3-204ENST00000563739 FLAD1Q8NFF5 587 aa14.71□□□□□ -0.05
SF3B3-204ENST00000563739 PCNTO95613 3336 aa14.71□□□□□ -0.06
SF3B3-204ENST00000563739 SMG6Q86US8 1419 aaKnown RBP14.7□□□□□ -0.06
SF3B3-204ENST00000563739 TATP17735 454 aaPredicted RBP14.7□□□□□ -0.06
SF3B3-204ENST00000563739 COL13A1Q5TAT6 717 aaPredicted RBP14.7□□□□□ -0.06
SF3B3-204ENST00000563739 RAPGEF4Q8WZA2 1011 aa14.7□□□□□ -0.06
SF3B3-204ENST00000563739 SSFA2P28290 1259 aa14.69□□□□□ -0.06
SF3B3-204ENST00000563739 AK7Q96M32 723 aa14.69□□□□□ -0.06
SF3B3-204ENST00000563739 SLC4A9Q96Q91 983 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms