RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 ZCRB1Q8TBF4 217 aaKnown RBP26.26■■□□□ 1.79
NME3-204ENST00000563498 SYTL4Q96C24 671 aaPredicted RBP26.26■■□□□ 1.79
NME3-204ENST00000563498 LY75O60449 1722 aa26.25■■□□□ 1.79
NME3-204ENST00000563498 NSD2O96028 1365 aa26.25■■□□□ 1.79
NME3-204ENST00000563498 PNPLA7Q6ZV29 1317 aa26.25■■□□□ 1.79
NME3-204ENST00000563498 MEGF6O75095 1541 aa26.24■■□□□ 1.79
NME3-204ENST00000563498 RGPD2P0DJD1 1756 aa26.23■■□□□ 1.79
NME3-204ENST00000563498 CGNL1Q0VF96 1302 aa26.23■■□□□ 1.79
NME3-204ENST00000563498 FBLN1P23142 703 aa26.23■■□□□ 1.79
NME3-204ENST00000563498 POLD1P28340 1107 aa26.23■■□□□ 1.79
NME3-204ENST00000563498 TFCP2L1Q9NZI6 479 aa26.23■■□□□ 1.79
NME3-204ENST00000563498 TUBGCP6Q96RT7 1819 aa26.21■■□□□ 1.79
NME3-204ENST00000563498 FYB1O15117 783 aa26.2■■□□□ 1.78
NME3-204ENST00000563498 NBPF6Q5VWK0 638 aa26.19■■□□□ 1.78
NME3-204ENST00000563498 NBPF4Q96M43 638 aa26.19■■□□□ 1.78
NME3-204ENST00000563498 SMG6Q86US8 1419 aaKnown RBP26.19■■□□□ 1.78
NME3-204ENST00000563498 KCNQ4P56696 695 aa26.18■■□□□ 1.78
NME3-204ENST00000563498 TMF1P82094 1093 aa26.18■■□□□ 1.78
NME3-204ENST00000563498 RRS1Q15050 365 aaKnown RBP26.18■■□□□ 1.78
NME3-204ENST00000563498 GPR162Q16538 588 aa26.17■■□□□ 1.78
NME3-204ENST00000563498 CCNL1Q9UK58 526 aaPredicted RBP26.17■■□□□ 1.78
NME3-204ENST00000563498 USP47Q96K76 1375 aa26.17■■□□□ 1.78
NME3-204ENST00000563498 RAPGEF4Q8WZA2 1011 aa26.16■■□□□ 1.78
NME3-204ENST00000563498 GGNBP2Q9H3C7 697 aa26.15■■□□□ 1.78
NME3-204ENST00000563498 KIF24Q5T7B8 1368 aa26.15■■□□□ 1.78
NME3-204ENST00000563498 INSRP06213 1382 aa26.14■■□□□ 1.78
NME3-204ENST00000563498 HMGB2P26583 209 aaKnown RBP26.13■■□□□ 1.77
NME3-204ENST00000563498 KLHL34Q8N239 644 aa26.13■■□□□ 1.77
NME3-204ENST00000563498 USHBP1Q8N6Y0 703 aa26.12■■□□□ 1.77
NME3-204ENST00000563498 FLT4P35916 1363 aa26.11■■□□□ 1.77
NME3-204ENST00000563498 TATP17735 454 aaPredicted RBP26.11■■□□□ 1.77
NME3-204ENST00000563498 CDCA8Q53HL2 280 aa26.11■■□□□ 1.77
NME3-204ENST00000563498 PCDH11XQ9BZA7 1347 aa26.11■■□□□ 1.77
NME3-204ENST00000563498 PCDH11YQ9BZA8 1340 aa26.11■■□□□ 1.77
NME3-204ENST00000563498 KIF20BQ96Q89 1820 aa26.1■■□□□ 1.77
NME3-204ENST00000563498 HSP90AB2PQ58FF8 381 aa26.1■■□□□ 1.77
NME3-204ENST00000563498 COL23A1Q86Y22 540 aaPredicted RBP26.09■■□□□ 1.77
NME3-204ENST00000563498 NLGN2Q8NFZ4 835 aa26.08■■□□□ 1.77
NME3-204ENST00000563498 C5P01031 1676 aa26.07■■□□□ 1.76
NME3-204ENST00000563498 MSH5O43196 834 aa26.06■■□□□ 1.76
NME3-204ENST00000563498 C1QTNF8P60827 252 aa26.06■■□□□ 1.76
NME3-204ENST00000563498 PELP1Q8IZL8 1130 aaKnown RBP26.05■■□□□ 1.76
NME3-204ENST00000563498 FLAD1Q8NFF5 587 aa26.04■■□□□ 1.76
NME3-204ENST00000563498 PALLDQ8WX93 1383 aa26.04■■□□□ 1.76
NME3-204ENST00000563498 CYP27B1O15528 508 aa26.02■■□□□ 1.76
NME3-204ENST00000563498 GRIN3BO60391 1043 aa26.02■■□□□ 1.76
NME3-204ENST00000563498 GOLGB1Q14789 3259 aaKnown RBP26.02■■□□□ 1.76
NME3-204ENST00000563498 PKD1L3Q7Z443 1732 aa26.02■■□□□ 1.76
NME3-204ENST00000563498 NCAPD2Q15021 1401 aa26.01■■□□□ 1.75
NME3-204ENST00000563498 MPRIPQ6WCQ1 1025 aa26.01■■□□□ 1.75
NME3-204ENST00000563498 TAF1LQ8IZX4 1826 aa26.01■■□□□ 1.75
NME3-204ENST00000563498 SMARCC1Q92922 1105 aaPredicted RBP26■■□□□ 1.75
NME3-204ENST00000563498 CARD14Q9BXL6 1004 aa26■■□□□ 1.75
NME3-204ENST00000563498 TOGARAM1Q9Y4F4 1720 aa26■■□□□ 1.75
NME3-204ENST00000563498 SENP3-EIF4A1A0A087X0R7 540 aa25.99■■□□□ 1.75
NME3-204ENST00000563498 NSD3Q9BZ95 1437 aa25.98■■□□□ 1.75
NME3-204ENST00000563498 ANKRD26Q9UPS8 1709 aa25.98■■□□□ 1.75
NME3-204ENST00000563498 YBX3P16989 372 aaKnown RBP eCLIP25.98■■□□□ 1.75
NME3-204ENST00000563498 MSL1Q68DK7 614 aa25.98■■□□□ 1.75
NME3-204ENST00000563498 CD2APQ9Y5K6 639 aa25.98■■□□□ 1.75
NME3-204ENST00000563498 EMILIN1Q9Y6C2 1016 aa25.98■■□□□ 1.75
NME3-204ENST00000563498 NKX1-1Q15270 411 aaPredicted RBP25.97■■□□□ 1.75
NME3-204ENST00000563498 ITGB4P16144 1822 aa25.97■■□□□ 1.75
NME3-204ENST00000563498 C4BP0C0L5 1744 aa25.97■■□□□ 1.75
NME3-204ENST00000563498 GIGYF1O75420 1035 aaPredicted RBP25.96■■□□□ 1.75
NME3-204ENST00000563498 SPG7Q9UQ90 795 aa25.94■■□□□ 1.74
NME3-204ENST00000563498 WASHC2AQ641Q2 1341 aa25.93■■□□□ 1.74
NME3-204ENST00000563498 PIGBQ92521 554 aa25.93■■□□□ 1.74
NME3-204ENST00000563498 AK7Q96M32 723 aa25.93■■□□□ 1.74
NME3-204ENST00000563498 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.93■■□□□ 1.74
NME3-204ENST00000563498 PPM1GO15355 546 aaPredicted RBP25.91■■□□□ 1.74
NME3-204ENST00000563498 UBR3Q6ZT12 1888 aa25.9■■□□□ 1.74
NME3-204ENST00000563498 TIMELESSQ9UNS1 1208 aa25.9■■□□□ 1.74
NME3-204ENST00000563498 MAP2P11137 1827 aaKnown RBP25.89■■□□□ 1.74
NME3-204ENST00000563498 TRIM26Q12899 539 aaPredicted RBP25.89■■□□□ 1.74
NME3-204ENST00000563498 SSFA2P28290 1259 aa25.88■■□□□ 1.73
NME3-204ENST00000563498 AMIGO3Q86WK7 504 aa25.88■■□□□ 1.73
NME3-204ENST00000563498 EYA1Q99502 592 aa25.88■■□□□ 1.73
NME3-204ENST00000563498 PLEKHG2Q9H7P9 1386 aa25.87■■□□□ 1.73
NME3-204ENST00000563498 LOC102724428A0A0B4J2F2 783 aa25.87■■□□□ 1.73
NME3-204ENST00000563498 SIK1P57059 783 aa25.87■■□□□ 1.73
NME3-204ENST00000563498 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.86■■□□□ 1.73
NME3-204ENST00000563498 TMOD3Q9NYL9 352 aa25.86■■□□□ 1.73
NME3-204ENST00000563498 POLKQ9UBT6 870 aa25.85■■□□□ 1.73
NME3-204ENST00000563498 PHF14O94880 888 aa25.84■■□□□ 1.73
NME3-204ENST00000563498 IFNL2Q8IZJ0 200 aa25.84■■□□□ 1.73
NME3-204ENST00000563498 ATP10DQ9P241 1426 aa25.84■■□□□ 1.73
NME3-204ENST00000563498 PHKG2P15735 406 aa25.83■■□□□ 1.73
NME3-204ENST00000563498 LINC00116Q8NCU8 138 aa25.83■■□□□ 1.73
NME3-204ENST00000563498 ASAP1Q9ULH1 1129 aa25.81■■□□□ 1.72
NME3-204ENST00000563498 ADCY9O60503 1353 aa25.81■■□□□ 1.72
NME3-204ENST00000563498 ATP6V1AP38606 617 aa25.79■■□□□ 1.72
NME3-204ENST00000563498 ITPK1Q13572 414 aa25.79■■□□□ 1.72
NME3-204ENST00000563498 SMIM5Q71RC9 77 aa25.79■■□□□ 1.72
NME3-204ENST00000563498 IGSF1Q8N6C5 1336 aa25.79■■□□□ 1.72
NME3-204ENST00000563498 GNPATO15228 680 aa25.78■■□□□ 1.72
NME3-204ENST00000563498 EIF4A2Q14240 407 aaKnown RBP25.78■■□□□ 1.72
NME3-204ENST00000563498 ATG3Q9NT62 314 aa25.77■■□□□ 1.72
NME3-204ENST00000563498 GPBP1L1Q9HC44 474 aaPredicted RBP25.76■■□□□ 1.71
NME3-204ENST00000563498 CLSPNQ9HAW4 1339 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms