RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 NUTM2DQ5VT03 806 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 RETREG3Q86VR2 466 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 NUTM2AQ8IVF1 878 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 FAM160A2Q8N612 972 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 PIK3R5Q8WYR1 880 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 VTI1AQ96AJ9 217 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 BACH2Q9BYV9 841 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 TANGO6Q9C0B7 1094 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 LARGE2Q8N3Y3 721 aa7.23□□□□□ -1.25
VPS35P1-201ENST00000563400 DHX38Q92620 1227 aaKnown RBP7.23□□□□□ -1.25
VPS35P1-201ENST00000563400 FCF1Q9Y324 198 aaKnown RBP7.23□□□□□ -1.25
VPS35P1-201ENST00000563400 TLDC2A0PJX2 215 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 TPD52L2O43399 206 aaKnown RBP7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 GUCA2AQ02747 115 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 CTDSPL2Q05D32 466 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 HLA-CQ95604 372 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 KLHL42Q9P2K6 505 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 TMA7Q9Y2S6 64 aaKnown RBP7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 MRC2Q9UBG0 1479 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 CD2BP2O95400 341 aaKnown RBP7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 RPIAP49247 311 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 MMP16P51512 607 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 SEMA3FQ13275 785 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 CCDC144BQ3MJ40 725 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 EPS8L1Q8TE68 723 aa7.22□□□□□ -1.25
VPS35P1-201ENST00000563400 RAD51AP2Q09MP3 1159 aa7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 FAM69CQ0P6D2 419 aa7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 MTMR2Q13614 643 aa7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 SPRYD7Q5W111 196 aa7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 EGFLAMQ63HQ2 1017 aa7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 ZNF598Q86UK7 904 aaKnown RBP7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 MYH16Q9H6N6 1097 aa7.21□□□□□ -1.26
VPS35P1-201ENST00000563400 GFRA3O60609 400 aa7.2□□□□□ -1.26
VPS35P1-201ENST00000563400 DXOO77932 396 aaKnown RBP7.2□□□□□ -1.26
VPS35P1-201ENST00000563400 EXOC8Q8IYI6 725 aa7.2□□□□□ -1.26
VPS35P1-201ENST00000563400 PIF1Q9H611 641 aa7.2□□□□□ -1.26
VPS35P1-201ENST00000563400 PRDM9Q9NQV7 894 aa7.2□□□□□ -1.26
VPS35P1-201ENST00000563400 PIK3CDO00329 1044 aa7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 JUNDP17535 347 aa7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 LRRN4Q8WUT4 740 aa7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 SPACA7Q96KW9 195 aa7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 CUEDC1Q9NWM3 386 aaPredicted RBP7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 IQSEC3Q9UPP2 1182 aaPredicted RBP7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 PDZRN3Q9UPQ7 1066 aa7.19□□□□□ -1.26
VPS35P1-201ENST00000563400 NESP48681 1621 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 SOX11P35716 441 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 CRTC2Q53ET0 693 aaPredicted RBP7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 LDLRAD1Q5T700 205 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 ZNF697Q5TEC3 545 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 SDE2Q6IQ49 451 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 LIAT1Q6ZQX7 453 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 CCDC24Q8N4L8 307 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 SYMPKQ92797 1274 aaKnown RBP7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 ZBTB3Q9H5J0 574 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 PRKAG2Q9UGJ0 569 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 PCDHGC3Q9UN70 934 aa7.18□□□□□ -1.26
VPS35P1-201ENST00000563400 NRG2O14511 850 aaPredicted RBP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 MAP4K4O95819 1239 aaPredicted RBP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 ATP2B4P23634 1241 aa7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 GTF2F1P35269 517 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 PRPF38BQ5VTL8 546 aaKnown RBP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 NLGN1Q8N2Q7 840 aa7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 TINF2Q9BSI4 451 aa7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 SCAMP3O14828 347 aaKnown RBP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 PARNO95453 639 aaKnown RBP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 PTPROQ16827 1216 aa7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 CLP1Q92989 425 aaKnown RBP7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 ANO2Q9NQ90 1003 aa7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 TBX22Q9Y458 520 aa7.17□□□□□ -1.26
VPS35P1-201ENST00000563400 PRDM2Q13029 1718 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 WRNQ14191 1432 aaPredicted RBP eCLIP7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 hCG_2014768A0A024R1R8 64 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 MAPK1P28482 360 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 IGBP1P78318 339 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 MRPL58Q14197 206 aaKnown RBP7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 PLA2G2CQ5R387 149 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 GORABQ5T7V8 394 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 DESI1Q6ICB0 168 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 Q6ZNB5 142 aa7.16□□□□□ -1.26
VPS35P1-201ENST00000563400 USP17L3A6NCW0 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L4A6NCW7 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L15C9J2P7 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L10C9JJH3 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L13C9JLJ4 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L12C9JPN9 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L11C9JVI0 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L21D6R901 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L18D6R9N7 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L22D6RA61 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L17D6RBQ6 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L19D6RCP7 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L20D6RJB6 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 PEX14O75381 377 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 ABL1P00519 1130 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L24Q0WX57 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 ZNF211Q13398 564 aaPredicted RBP7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 TCEAL1Q15170 157 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L2Q6R6M4 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L1Q7RTZ2 530 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 NT5DC4Q86YG4 428 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms