RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 FAM161AQ3B820 660 aa24.33■■□□□ 1.48
SMPD3-203ENST00000563226 ARHGAP45Q92619 1136 aa24.33■■□□□ 1.48
SMPD3-203ENST00000563226 KIF1AQ12756 1690 aa24.33■■□□□ 1.48
SMPD3-203ENST00000563226 ZBTB7CA1YPR0 619 aa24.32■■□□□ 1.48
SMPD3-203ENST00000563226 PLEKHG5O94827 1062 aa24.32■■□□□ 1.48
SMPD3-203ENST00000563226 RTF1Q92541 710 aaKnown RBP24.32■■□□□ 1.48
SMPD3-203ENST00000563226 C19orf44Q9H6X5 657 aa24.32■■□□□ 1.48
SMPD3-203ENST00000563226 PDZRN3Q9UPQ7 1066 aa24.31■■□□□ 1.48
SMPD3-203ENST00000563226 SLIT3O75094 1523 aa24.31■■□□□ 1.48
SMPD3-203ENST00000563226 HSPA2P54652 639 aa24.31■■□□□ 1.48
SMPD3-203ENST00000563226 KCNH5Q8NCM2 988 aa24.3■■□□□ 1.48
SMPD3-203ENST00000563226 TMEM94Q12767 1356 aa24.3■■□□□ 1.48
SMPD3-203ENST00000563226 KIAA0232Q92628 1395 aa24.3■■□□□ 1.48
SMPD3-203ENST00000563226 VIRMAQ69YN4 1812 aaKnown RBP24.3■■□□□ 1.48
SMPD3-203ENST00000563226 ABCC4O15439 1325 aa24.3■■□□□ 1.48
SMPD3-203ENST00000563226 IPO9Q96P70 1041 aaKnown RBP24.29■■□□□ 1.48
SMPD3-203ENST00000563226 MSH6P52701 1360 aa24.29■■□□□ 1.48
SMPD3-203ENST00000563226 HDAC1Q13547 482 aaPredicted RBP24.28■■□□□ 1.48
SMPD3-203ENST00000563226 ANP32EQ9BTT0 268 aa24.28■■□□□ 1.48
SMPD3-203ENST00000563226 LMOD2Q6P5Q4 547 aa24.28■■□□□ 1.48
SMPD3-203ENST00000563226 KRT28Q7Z3Y7 464 aa24.28■■□□□ 1.48
SMPD3-203ENST00000563226 GCP02774 474 aa24.27■■□□□ 1.48
SMPD3-203ENST00000563226 NBPF6Q5VWK0 638 aa24.27■■□□□ 1.48
SMPD3-203ENST00000563226 NBPF4Q96M43 638 aa24.27■■□□□ 1.48
SMPD3-203ENST00000563226 MST1RQ04912 1400 aa24.27■■□□□ 1.48
SMPD3-203ENST00000563226 TSPYL4Q9UJ04 414 aa24.26■■□□□ 1.47
SMPD3-203ENST00000563226 GNAT3A8MTJ3 354 aa24.25■■□□□ 1.47
SMPD3-203ENST00000563226 ZBTB7BO15156 539 aaPredicted RBP24.25■■□□□ 1.47
SMPD3-203ENST00000563226 MAP3K5Q99683 1374 aa24.25■■□□□ 1.47
SMPD3-203ENST00000563226 ALS2Q96Q42 1657 aa24.25■■□□□ 1.47
SMPD3-203ENST00000563226 USP19O94966 1318 aa24.24■■□□□ 1.47
SMPD3-203ENST00000563226 HTATSF1O43719 755 aaKnown RBP24.24■■□□□ 1.47
SMPD3-203ENST00000563226 ARHGEF25Q86VW2 580 aa24.24■■□□□ 1.47
SMPD3-203ENST00000563226 LRRC59Q96AG4 307 aaKnown RBP24.23■■□□□ 1.47
SMPD3-203ENST00000563226 API5Q9BZZ5 524 aaKnown RBP24.23■■□□□ 1.47
SMPD3-203ENST00000563226 NOP58Q9Y2X3 529 aaKnown RBP24.23■■□□□ 1.47
SMPD3-203ENST00000563226 RGS12O14924 1447 aa24.23■■□□□ 1.47
SMPD3-203ENST00000563226 IL17REQ8NFR9 667 aa24.23■■□□□ 1.47
SMPD3-203ENST00000563226 ATF3P18847 181 aa24.22■■□□□ 1.47
SMPD3-203ENST00000563226 DDX17Q92841 729 aaKnown RBP24.22■■□□□ 1.47
SMPD3-203ENST00000563226 ERICH6Q7L0X2 663 aa24.22■■□□□ 1.47
SMPD3-203ENST00000563226 C1orf115Q9H7X2 142 aa24.22■■□□□ 1.47
SMPD3-203ENST00000563226 RGPD5Q99666 1765 aa24.2■■□□□ 1.46
SMPD3-203ENST00000563226 HAP1P54257 671 aaPredicted RBP24.2■■□□□ 1.46
SMPD3-203ENST00000563226 SMC5Q8IY18 1101 aa24.2■■□□□ 1.46
SMPD3-203ENST00000563226 DCCP43146 1447 aa24.2■■□□□ 1.46
SMPD3-203ENST00000563226 MED1Q15648 1581 aaPredicted RBP24.19■■□□□ 1.46
SMPD3-203ENST00000563226 XIRP1Q702N8 1843 aaKnown RBP24.19■■□□□ 1.46
SMPD3-203ENST00000563226 NCOA3Q9Y6Q9 1424 aa24.17■■□□□ 1.46
SMPD3-203ENST00000563226 AXIN2Q9Y2T1 843 aa24.17■■□□□ 1.46
SMPD3-203ENST00000563226 SLC4A2P04920 1241 aa24.15■■□□□ 1.46
SMPD3-203ENST00000563226 FAM208AQ9UK61 1670 aaKnown RBP24.15■■□□□ 1.46
SMPD3-203ENST00000563226 STRCQ7RTU9 1775 aa24.15■■□□□ 1.46
SMPD3-203ENST00000563226 NCAPD2Q15021 1401 aa24.15■■□□□ 1.46
SMPD3-203ENST00000563226 CAMTA1Q9Y6Y1 1673 aa24.15■■□□□ 1.46
SMPD3-203ENST00000563226 ANKRD24Q8TF21 1146 aa24.15■■□□□ 1.46
SMPD3-203ENST00000563226 ZBTB47Q9UFB7 747 aaPredicted RBP24.14■■□□□ 1.46
SMPD3-203ENST00000563226 LMTK3Q96Q04 1460 aa24.14■■□□□ 1.46
SMPD3-203ENST00000563226 LMO7Q8WWI1 1683 aa24.14■■□□□ 1.45
SMPD3-203ENST00000563226 KDM4FA0A1W2PPD8 638 aa24.14■■□□□ 1.45
SMPD3-203ENST00000563226 INTS3Q68E01 1043 aaKnown RBP24.14■■□□□ 1.45
SMPD3-203ENST00000563226 G2E3Q7L622 706 aa24.14■■□□□ 1.45
SMPD3-203ENST00000563226 CHMP4BQ9H444 224 aaKnown RBP24.14■■□□□ 1.45
SMPD3-203ENST00000563226 PTPRCP08575 1304 aa24.13■■□□□ 1.45
SMPD3-203ENST00000563226 SIRT2Q8IXJ6 389 aa24.13■■□□□ 1.45
SMPD3-203ENST00000563226 CEMIPQ8WUJ3 1361 aa24.12■■□□□ 1.45
SMPD3-203ENST00000563226 SEC24BO95487 1268 aa24.12■■□□□ 1.45
SMPD3-203ENST00000563226 ZC3H6P61129 1189 aaKnown RBP24.12■■□□□ 1.45
SMPD3-203ENST00000563226 TAF7Q15545 349 aaPredicted RBP24.12■■□□□ 1.45
SMPD3-203ENST00000563226 PXDNQ92626 1479 aa24.11■■□□□ 1.45
SMPD3-203ENST00000563226 CADPS2Q86UW7 1296 aa24.11■■□□□ 1.45
SMPD3-203ENST00000563226 LGR6Q9HBX8 967 aa24.11■■□□□ 1.45
SMPD3-203ENST00000563226 NUCB1Q02818 461 aa24.09■■□□□ 1.45
SMPD3-203ENST00000563226 ZNF530Q6P9A1 599 aaPredicted RBP24.09■■□□□ 1.45
SMPD3-203ENST00000563226 NECTIN2Q92692 538 aa24.08■■□□□ 1.45
SMPD3-203ENST00000563226 KDM3BQ7LBC6 1761 aa24.08■■□□□ 1.44
SMPD3-203ENST00000563226 BABAM1Q9NWV8 329 aa24.07■■□□□ 1.44
SMPD3-203ENST00000563226 LNPKQ9C0E8 428 aa24.07■■□□□ 1.44
SMPD3-203ENST00000563226 ERBB3P21860 1342 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 NPHP3Q7Z494 1330 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 PLEKHO1Q53GL0 409 aaPredicted RBP24.06■■□□□ 1.44
SMPD3-203ENST00000563226 CABLES1Q8TDN4 633 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 COL18A1P39060 1754 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 TNS3Q68CZ2 1445 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 CRYBG1Q9Y4K1 1723 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 F6X3S4 739 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 AKAP4Q5JQC9 854 aa24.06■■□□□ 1.44
SMPD3-203ENST00000563226 ATP10DQ9P241 1426 aa24.05■■□□□ 1.44
SMPD3-203ENST00000563226 MPRIPQ6WCQ1 1025 aa24.04■■□□□ 1.44
SMPD3-203ENST00000563226 CHD1LQ86WJ1 897 aa24.04■■□□□ 1.44
SMPD3-203ENST00000563226 STK31Q9BXU1 1019 aa24.04■■□□□ 1.44
SMPD3-203ENST00000563226 CACNA1FO60840 1977 aa24.04■■□□□ 1.44
SMPD3-203ENST00000563226 CCDC30Q5VVM6 783 aa24.04■■□□□ 1.44
SMPD3-203ENST00000563226 GCC1Q96CN9 775 aa24.04■■□□□ 1.44
SMPD3-203ENST00000563226 MEIS3Q99687 375 aa24.03■■□□□ 1.44
SMPD3-203ENST00000563226 AMOTQ4VCS5 1084 aa24.03■■□□□ 1.44
SMPD3-203ENST00000563226 DDRGK1Q96HY6 314 aa24.03■■□□□ 1.44
SMPD3-203ENST00000563226 ANKRD45Q5TZF3 282 aa24.02■■□□□ 1.44
SMPD3-203ENST00000563226 SLC4A10Q6U841 1118 aa24.02■■□□□ 1.44
SMPD3-203ENST00000563226 KCNQ3O43525 872 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms