RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 PROM2Q8N271 834 aa21.85■■□□□ 1.09
SF3B3-203ENST00000562874 TXNRD1Q16881 649 aa21.84■■□□□ 1.09
SF3B3-203ENST00000562874 DDX54Q8TDD1 881 aaKnown RBP21.84■■□□□ 1.09
SF3B3-203ENST00000562874 EIF4G2P78344 907 aaKnown RBP eCLIP21.83■■□□□ 1.09
SF3B3-203ENST00000562874 HSP90AB2PQ58FF8 381 aa21.83■■□□□ 1.09
SF3B3-203ENST00000562874 EMILIN1Q9Y6C2 1016 aa21.83■■□□□ 1.09
SF3B3-203ENST00000562874 INSRP06213 1382 aa21.83■■□□□ 1.08
SF3B3-203ENST00000562874 NBPF6Q5VWK0 638 aa21.82■■□□□ 1.08
SF3B3-203ENST00000562874 NBPF4Q96M43 638 aa21.82■■□□□ 1.08
SF3B3-203ENST00000562874 TAF1LQ8IZX4 1826 aa21.82■■□□□ 1.08
SF3B3-203ENST00000562874 PDGFDQ9GZP0 370 aaPredicted RBP21.8■■□□□ 1.08
SF3B3-203ENST00000562874 C5P01031 1676 aa21.79■■□□□ 1.08
SF3B3-203ENST00000562874 CGNL1Q0VF96 1302 aa21.79■■□□□ 1.08
SF3B3-203ENST00000562874 KIF24Q5T7B8 1368 aa21.78■■□□□ 1.08
SF3B3-203ENST00000562874 PPM1GO15355 546 aaPredicted RBP21.77■■□□□ 1.08
SF3B3-203ENST00000562874 NSD2O96028 1365 aa21.76■■□□□ 1.07
SF3B3-203ENST00000562874 ZCRB1Q8TBF4 217 aaKnown RBP21.76■■□□□ 1.07
SF3B3-203ENST00000562874 SYTL4Q96C24 671 aaPredicted RBP21.76■■□□□ 1.07
SF3B3-203ENST00000562874 STK32BQ9NY57 414 aa21.76■■□□□ 1.07
SF3B3-203ENST00000562874 VIRMAQ69YN4 1812 aaKnown RBP21.76■■□□□ 1.07
SF3B3-203ENST00000562874 RAPGEF4Q8WZA2 1011 aa21.74■■□□□ 1.07
SF3B3-203ENST00000562874 SPON1Q9HCB6 807 aa21.74■■□□□ 1.07
SF3B3-203ENST00000562874 NCAPD2Q15021 1401 aa21.73■■□□□ 1.07
SF3B3-203ENST00000562874 TNNT2P45379 298 aaPredicted RBP21.73■■□□□ 1.07
SF3B3-203ENST00000562874 SLC15A2Q16348 729 aa21.73■■□□□ 1.07
SF3B3-203ENST00000562874 ZBTB7AO95365 584 aa21.72■■□□□ 1.07
SF3B3-203ENST00000562874 TATP17735 454 aaPredicted RBP21.72■■□□□ 1.07
SF3B3-203ENST00000562874 PPP1R1BQ9UD71 204 aaPredicted RBP21.72■■□□□ 1.07
SF3B3-203ENST00000562874 COL24A1Q17RW2 1714 aa21.72■■□□□ 1.07
SF3B3-203ENST00000562874 PRIM1P49642 420 aaKnown RBP21.71■■□□□ 1.07
SF3B3-203ENST00000562874 ZNF827Q17R98 1081 aa21.71■■□□□ 1.07
SF3B3-203ENST00000562874 LRRC4BQ9NT99 713 aa21.71■■□□□ 1.07
SF3B3-203ENST00000562874 PANK3Q9H999 370 aa21.7■■□□□ 1.06
SF3B3-203ENST00000562874 KCNQ4P56696 695 aa21.69■■□□□ 1.06
SF3B3-203ENST00000562874 PCDH11XQ9BZA7 1347 aa21.69■■□□□ 1.06
SF3B3-203ENST00000562874 PCDH11YQ9BZA8 1340 aa21.69■■□□□ 1.06
SF3B3-203ENST00000562874 POLKQ9UBT6 870 aa21.68■■□□□ 1.06
SF3B3-203ENST00000562874 WASHC2AQ641Q2 1341 aa21.67■■□□□ 1.06
SF3B3-203ENST00000562874 ATF5Q9Y2D1 282 aaPredicted RBP21.67■■□□□ 1.06
SF3B3-203ENST00000562874 UBR3Q6ZT12 1888 aa21.65■■□□□ 1.06
SF3B3-203ENST00000562874 CYP27B1O15528 508 aa21.64■■□□□ 1.05
SF3B3-203ENST00000562874 EYA1Q99502 592 aa21.64■■□□□ 1.05
SF3B3-203ENST00000562874 C4BP0C0L5 1744 aa21.63■■□□□ 1.05
SF3B3-203ENST00000562874 PTGER2P43116 358 aa21.63■■□□□ 1.05
SF3B3-203ENST00000562874 KIF7Q2M1P5 1343 aa21.62■■□□□ 1.05
SF3B3-203ENST00000562874 EIF4A2Q14240 407 aaKnown RBP21.62■■□□□ 1.05
SF3B3-203ENST00000562874 SLC27A3Q5K4L6 730 aa21.61■■□□□ 1.05
SF3B3-203ENST00000562874 AKT1S1Q96B36 256 aa21.61■■□□□ 1.05
SF3B3-203ENST00000562874 CCNL1Q9UK58 526 aaPredicted RBP21.6■■□□□ 1.05
SF3B3-203ENST00000562874 CHD4Q14839 1912 aa21.59■■□□□ 1.05
SF3B3-203ENST00000562874 MTFR1LQ9H019 292 aa21.59■■□□□ 1.05
SF3B3-203ENST00000562874 PALLDQ8WX93 1383 aa21.59■■□□□ 1.05
SF3B3-203ENST00000562874 SCN11AQ9UI33 1791 aa21.59■■□□□ 1.05
SF3B3-203ENST00000562874 PNPLA7Q6ZV29 1317 aa21.58■■□□□ 1.05
SF3B3-203ENST00000562874 MPRIPQ6WCQ1 1025 aa21.58■■□□□ 1.05
SF3B3-203ENST00000562874 MORC1Q86VD1 984 aa21.57■■□□□ 1.04
SF3B3-203ENST00000562874 COL5A3P25940 1745 aaPredicted RBP21.56■■□□□ 1.04
SF3B3-203ENST00000562874 SGIP1Q9BQI5 828 aa21.56■■□□□ 1.04
SF3B3-203ENST00000562874 IGSF1Q8N6C5 1336 aa21.55■■□□□ 1.04
SF3B3-203ENST00000562874 SPG7Q9UQ90 795 aa21.55■■□□□ 1.04
SF3B3-203ENST00000562874 KNSTRNQ9Y448 316 aa21.55■■□□□ 1.04
SF3B3-203ENST00000562874 TFCP2L1Q9NZI6 479 aa21.54■■□□□ 1.04
SF3B3-203ENST00000562874 FHDC1Q9C0D6 1143 aaPredicted RBP21.53■■□□□ 1.04
SF3B3-203ENST00000562874 PHKG2P15735 406 aa21.51■■□□□ 1.03
SF3B3-203ENST00000562874 AMER1Q5JTC6 1135 aaPredicted RBP21.51■■□□□ 1.03
SF3B3-203ENST00000562874 NKX1-1Q15270 411 aaPredicted RBP21.5■■□□□ 1.03
SF3B3-203ENST00000562874 AEBP1Q8IUX7 1158 aa21.5■■□□□ 1.03
SF3B3-203ENST00000562874 PIGBQ92521 554 aa21.5■■□□□ 1.03
SF3B3-203ENST00000562874 ZNF831Q5JPB2 1677 aa21.5■■□□□ 1.03
SF3B3-203ENST00000562874 IFNL2Q8IZJ0 200 aa21.49■■□□□ 1.03
SF3B3-203ENST00000562874 ARXQ96QS3 562 aa21.49■■□□□ 1.03
SF3B3-203ENST00000562874 C4AP0C0L4 1744 aa21.49■■□□□ 1.03
SF3B3-203ENST00000562874 KDM6AO15550 1401 aaPredicted RBP21.48■■□□□ 1.03
SF3B3-203ENST00000562874 KLHL34Q8N239 644 aa21.48■■□□□ 1.03
SF3B3-203ENST00000562874 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.48■■□□□ 1.03
SF3B3-203ENST00000562874 TJP1Q07157 1748 aa21.47■■□□□ 1.03
SF3B3-203ENST00000562874 MSH5O43196 834 aa21.47■■□□□ 1.03
SF3B3-203ENST00000562874 CNGB1Q14028 1251 aaPredicted RBP21.47■■□□□ 1.03
SF3B3-203ENST00000562874 SYT17Q9BSW7 474 aa21.47■■□□□ 1.03
SF3B3-203ENST00000562874 TMOD3Q9NYL9 352 aa21.47■■□□□ 1.03
SF3B3-203ENST00000562874 MYH14Q7Z406 1995 aaKnown RBP21.47■■□□□ 1.03
SF3B3-203ENST00000562874 CC2D1BQ5T0F9 858 aaKnown RBP21.46■■□□□ 1.03
SF3B3-203ENST00000562874 COL23A1Q86Y22 540 aaPredicted RBP21.46■■□□□ 1.03
SF3B3-203ENST00000562874 PLEKHG2Q9H7P9 1386 aa21.46■■□□□ 1.03
SF3B3-203ENST00000562874 MSL1Q68DK7 614 aa21.45■■□□□ 1.02
SF3B3-203ENST00000562874 SMARCC1Q92922 1105 aaPredicted RBP21.45■■□□□ 1.02
SF3B3-203ENST00000562874 ZNF530Q6P9A1 599 aaPredicted RBP21.44■■□□□ 1.02
SF3B3-203ENST00000562874 SLC16A10Q8TF71 515 aa21.44■■□□□ 1.02
SF3B3-203ENST00000562874 ASAP1Q9ULH1 1129 aa21.44■■□□□ 1.02
SF3B3-203ENST00000562874 DCAF8L1A6NGE4 600 aa21.43■■□□□ 1.02
SF3B3-203ENST00000562874 SULT6B1Q6IMI4 303 aa21.43■■□□□ 1.02
SF3B3-203ENST00000562874 SMIM5Q71RC9 77 aa21.43■■□□□ 1.02
SF3B3-203ENST00000562874 AMIGO3Q86WK7 504 aa21.43■■□□□ 1.02
SF3B3-203ENST00000562874 KDRP35968 1356 aa21.43■■□□□ 1.02
SF3B3-203ENST00000562874 COL3A1P02461 1466 aaPredicted RBP21.42■■□□□ 1.02
SF3B3-203ENST00000562874 POLD1P28340 1107 aa21.42■■□□□ 1.02
SF3B3-203ENST00000562874 MAP3K5Q99683 1374 aa21.42■■□□□ 1.02
SF3B3-203ENST00000562874 CICQ96RK0 1608 aaPredicted RBP21.41■■□□□ 1.02
SF3B3-203ENST00000562874 LOC102724428A0A0B4J2F2 783 aa21.41■■□□□ 1.02
SF3B3-203ENST00000562874 PER1O15534 1290 aaPredicted RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms