RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 IL16Q14005 1332 aa17.76■□□□□ 0.43
VPS39-206ENST00000562662 SPATA31A6Q5VVP1 1343 aa17.76■□□□□ 0.43
VPS39-206ENST00000562662 CRB1P82279 1406 aa17.76■□□□□ 0.43
VPS39-206ENST00000562662 SHANK3Q9BYB0 1731 aa17.75■□□□□ 0.43
VPS39-206ENST00000562662 LARP1Q6PKG0 1096 aaKnown RBP17.75■□□□□ 0.43
VPS39-206ENST00000562662 TOM1L2Q6ZVM7 507 aa17.75■□□□□ 0.43
VPS39-206ENST00000562662 CARD10Q9BWT7 1032 aa17.75■□□□□ 0.43
VPS39-206ENST00000562662 STRN4Q9NRL3 753 aa17.75■□□□□ 0.43
VPS39-206ENST00000562662 ADAMTS7Q9UKP4 1686 aa17.74■□□□□ 0.43
VPS39-206ENST00000562662 EVA1CP58658 441 aa17.74■□□□□ 0.43
VPS39-206ENST00000562662 MAP3K5Q99683 1374 aa17.74■□□□□ 0.43
VPS39-206ENST00000562662 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.73■□□□□ 0.43
VPS39-206ENST00000562662 AMOTQ4VCS5 1084 aa17.73■□□□□ 0.43
VPS39-206ENST00000562662 PLEKHO1Q53GL0 409 aaPredicted RBP17.73■□□□□ 0.43
VPS39-206ENST00000562662 THUMPD2Q9BTF0 503 aaKnown RBP17.73■□□□□ 0.43
VPS39-206ENST00000562662 OVOS2A0A0G2JMS6 1433 aa17.72■□□□□ 0.43
VPS39-206ENST00000562662 SCN11AQ9UI33 1791 aa17.72■□□□□ 0.43
VPS39-206ENST00000562662 HTATSF1O43719 755 aaKnown RBP17.72■□□□□ 0.43
VPS39-206ENST00000562662 TATP17735 454 aaPredicted RBP17.72■□□□□ 0.43
VPS39-206ENST00000562662 DCTN1Q14203 1278 aa17.72■□□□□ 0.43
VPS39-206ENST00000562662 RAPGEF4Q8WZA2 1011 aa17.72■□□□□ 0.43
VPS39-206ENST00000562662 GNAT3A8MTJ3 354 aa17.71■□□□□ 0.43
VPS39-206ENST00000562662 SIPA1L3O60292 1781 aaPredicted RBP17.71■□□□□ 0.43
VPS39-206ENST00000562662 CALD1Q05682 793 aaKnown RBP17.7■□□□□ 0.42
VPS39-206ENST00000562662 ZNF530Q6P9A1 599 aaPredicted RBP17.7■□□□□ 0.42
VPS39-206ENST00000562662 MCM10Q7L590 875 aa17.7■□□□□ 0.42
VPS39-206ENST00000562662 MYH16Q9H6N6 1097 aa17.7■□□□□ 0.42
VPS39-206ENST00000562662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.7■□□□□ 0.42
VPS39-206ENST00000562662 ZNF853P0CG23 659 aa17.69■□□□□ 0.42
VPS39-206ENST00000562662 AKAP4Q5JQC9 854 aa17.69■□□□□ 0.42
VPS39-206ENST00000562662 DISP2A7MBM2 1401 aa17.69■□□□□ 0.42
VPS39-206ENST00000562662 FANCIQ9NVI1 1328 aa17.69■□□□□ 0.42
VPS39-206ENST00000562662 RTF1Q92541 710 aaKnown RBP17.68■□□□□ 0.42
VPS39-206ENST00000562662 IFT57Q9NWB7 429 aa17.68■□□□□ 0.42
VPS39-206ENST00000562662 CEMIPQ8WUJ3 1361 aa17.67■□□□□ 0.42
VPS39-206ENST00000562662 IL2RBP14784 551 aa17.67■□□□□ 0.42
VPS39-206ENST00000562662 GNAI1P63096 354 aa17.67■□□□□ 0.42
VPS39-206ENST00000562662 TSR2Q969E8 191 aaKnown RBP17.67■□□□□ 0.42
VPS39-206ENST00000562662 BCL9LQ86UU0 1499 aa17.67■□□□□ 0.42
VPS39-206ENST00000562662 KDM3BQ7LBC6 1761 aa17.66■□□□□ 0.42
VPS39-206ENST00000562662 IL17REQ8NFR9 667 aa17.66■□□□□ 0.42
VPS39-206ENST00000562662 CFAP44Q96MT7 982 aa17.66■□□□□ 0.42
VPS39-206ENST00000562662 SPG7Q9UQ90 795 aa17.66■□□□□ 0.42
VPS39-206ENST00000562662 C1orf141Q5JVX7 400 aa17.65■□□□□ 0.42
VPS39-206ENST00000562662 FNBP4Q8N3X1 1017 aaPredicted RBP17.65■□□□□ 0.42
VPS39-206ENST00000562662 C8orf37Q96NL8 207 aa17.65■□□□□ 0.42
VPS39-206ENST00000562662 SPATA31A1Q5TZJ5 1347 aa17.65■□□□□ 0.42
VPS39-206ENST00000562662 PHKG2P15735 406 aa17.64■□□□□ 0.41
VPS39-206ENST00000562662 UNC5CLQ8IV45 518 aa17.64■□□□□ 0.41
VPS39-206ENST00000562662 RCAN3Q9UKA8 241 aa17.64■□□□□ 0.41
VPS39-206ENST00000562662 SUPT16HQ9Y5B9 1047 aaKnown RBP17.64■□□□□ 0.41
VPS39-206ENST00000562662 KDM6AO15550 1401 aaPredicted RBP17.64■□□□□ 0.41
VPS39-206ENST00000562662 CHL1O00533 1208 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 CYP27B1O15528 508 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 NGLY1Q96IV0 654 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 LGR6Q9HBX8 967 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 MBIPQ9NS73 344 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 USP35Q9P2H5 1018 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 LAS1LQ9Y4W2 734 aaKnown RBP17.63■□□□□ 0.41
VPS39-206ENST00000562662 SPATA31A5Q5VU36 1347 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 RNF123Q5XPI4 1314 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 SPATA31A7Q8IWB4 1347 aa17.63■□□□□ 0.41
VPS39-206ENST00000562662 RNMTO43148 476 aaKnown RBP17.62■□□□□ 0.41
VPS39-206ENST00000562662 MPRIPQ6WCQ1 1025 aa17.62■□□□□ 0.41
VPS39-206ENST00000562662 IFNL2Q8IZJ0 200 aa17.62■□□□□ 0.41
VPS39-206ENST00000562662 ZCRB1Q8TBF4 217 aaKnown RBP17.62■□□□□ 0.41
VPS39-206ENST00000562662 MRC1P22897 1456 aa17.62■□□□□ 0.41
VPS39-206ENST00000562662 TOGARAM1Q9Y4F4 1720 aa17.61■□□□□ 0.41
VPS39-206ENST00000562662 EXOSC9Q06265 439 aaKnown RBP17.61■□□□□ 0.41
VPS39-206ENST00000562662 THRAP3Q9Y2W1 955 aaKnown RBP17.61■□□□□ 0.41
VPS39-206ENST00000562662 PCDH11XQ9BZA7 1347 aa17.61■□□□□ 0.41
VPS39-206ENST00000562662 PCDH11YQ9BZA8 1340 aa17.61■□□□□ 0.41
VPS39-206ENST00000562662 VPS72Q15906 364 aa17.6■□□□□ 0.41
VPS39-206ENST00000562662 TNS2Q63HR2 1409 aa17.59■□□□□ 0.41
VPS39-206ENST00000562662 CT47B1P0C2W7 299 aaPredicted RBP17.59■□□□□ 0.41
VPS39-206ENST00000562662 MEX3CQ5U5Q3 659 aaKnown RBP17.59■□□□□ 0.41
VPS39-206ENST00000562662 BABAM1Q9NWV8 329 aa17.59■□□□□ 0.41
VPS39-206ENST00000562662 TAF7Q15545 349 aaPredicted RBP17.58■□□□□ 0.4
VPS39-206ENST00000562662 USP21Q9UK80 565 aa17.58■□□□□ 0.4
VPS39-206ENST00000562662 GLI3P10071 1580 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 AFF2P51816 1311 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 ITGB4P16144 1822 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 HSP90AB1P08238 724 aaKnown RBP17.57■□□□□ 0.4
VPS39-206ENST00000562662 BARGINQ6ZT62 677 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 CDCA7Q9BWT1 371 aaPredicted RBP17.57■□□□□ 0.4
VPS39-206ENST00000562662 MIS18AQ9NYP9 233 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 TSPYL4Q9UJ04 414 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 THSD7AQ9UPZ6 1657 aa17.57■□□□□ 0.4
VPS39-206ENST00000562662 NKX1-1Q15270 411 aaPredicted RBP17.56■□□□□ 0.4
VPS39-206ENST00000562662 DCAF5Q96JK2 942 aa17.56■□□□□ 0.4
VPS39-206ENST00000562662 ATRNO75882 1429 aa17.55■□□□□ 0.4
VPS39-206ENST00000562662 RARSP54136 660 aaKnown RBP17.55■□□□□ 0.4
VPS39-206ENST00000562662 RRP1P56182 461 aaKnown RBP17.55■□□□□ 0.4
VPS39-206ENST00000562662 TEFQ10587 303 aa17.55■□□□□ 0.4
VPS39-206ENST00000562662 FBXO41Q8TF61 875 aa17.55■□□□□ 0.4
VPS39-206ENST00000562662 CCDC9Q9Y3X0 531 aaKnown RBP17.55■□□□□ 0.4
VPS39-206ENST00000562662 GTF3C3Q9Y5Q9 886 aa17.55■□□□□ 0.4
VPS39-206ENST00000562662 PAPPAQ13219 1627 aa17.54■□□□□ 0.4
VPS39-206ENST00000562662 TSPYL6Q8N831 410 aa17.54■□□□□ 0.4
VPS39-206ENST00000562662 C8orf58Q8NAV2 365 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms