RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 THRAP3Q9Y2W1 955 aaKnown RBP13.22□□□□□ -0.29
CLK3-208ENST00000562626 KDRP35968 1356 aa13.21□□□□□ -0.29
CLK3-208ENST00000562626 BTAF1O14981 1849 aa13.21□□□□□ -0.29
CLK3-208ENST00000562626 A0A0G2JS52 829 aa13.21□□□□□ -0.29
CLK3-208ENST00000562626 DIAPH1O60610 1272 aaKnown RBP13.21□□□□□ -0.29
CLK3-208ENST00000562626 MYT1Q01538 1121 aa13.21□□□□□ -0.29
CLK3-208ENST00000562626 NHSQ6T4R5 1651 aa13.21□□□□□ -0.3
CLK3-208ENST00000562626 IL2RBP14784 551 aa13.2□□□□□ -0.3
CLK3-208ENST00000562626 HMOX1P09601 288 aa13.19□□□□□ -0.3
CLK3-208ENST00000562626 SIPA1L3O60292 1781 aaPredicted RBP13.19□□□□□ -0.3
CLK3-208ENST00000562626 ADAMTS7Q9UKP4 1686 aa13.18□□□□□ -0.3
CLK3-208ENST00000562626 SULT6B1Q6IMI4 303 aa13.18□□□□□ -0.3
CLK3-208ENST00000562626 MARCH10Q8NA82 808 aaPredicted RBP13.18□□□□□ -0.3
CLK3-208ENST00000562626 DDB1Q16531 1140 aa13.17□□□□□ -0.3
CLK3-208ENST00000562626 KRT27Q7Z3Y8 459 aa13.17□□□□□ -0.3
CLK3-208ENST00000562626 U2SURPO15042 1029 aaKnown RBP13.16□□□□□ -0.3
CLK3-208ENST00000562626 CFAP53Q96M91 514 aa13.16□□□□□ -0.3
CLK3-208ENST00000562626 ANP32CO43423 234 aa13.15□□□□□ -0.3
CLK3-208ENST00000562626 TATP17735 454 aaPredicted RBP13.15□□□□□ -0.3
CLK3-208ENST00000562626 PTF1AQ7RTS3 328 aa13.15□□□□□ -0.3
CLK3-208ENST00000562626 CDCA7Q9BWT1 371 aaPredicted RBP13.15□□□□□ -0.3
CLK3-208ENST00000562626 RSPH6AQ9H0K4 717 aa13.15□□□□□ -0.3
CLK3-208ENST00000562626 CYP27B1O15528 508 aa13.14□□□□□ -0.31
CLK3-208ENST00000562626 RAPGEF4Q8WZA2 1011 aa13.14□□□□□ -0.31
CLK3-208ENST00000562626 LY75O60449 1722 aa13.13□□□□□ -0.31
CLK3-208ENST00000562626 EXOC5O00471 708 aa13.13□□□□□ -0.31
CLK3-208ENST00000562626 DIEXFQ68CQ4 756 aaKnown RBP13.13□□□□□ -0.31
CLK3-208ENST00000562626 ZCRB1Q8TBF4 217 aaKnown RBP13.13□□□□□ -0.31
CLK3-208ENST00000562626 PHACTR3Q96KR7 559 aa13.13□□□□□ -0.31
CLK3-208ENST00000562626 RREB1Q92766 1687 aa13.12□□□□□ -0.31
CLK3-208ENST00000562626 U2AF1L5P0DN76 240 aaPredicted RBP13.12□□□□□ -0.31
CLK3-208ENST00000562626 U2AF1Q01081 240 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLK3-208ENST00000562626 PDE3BQ13370 1112 aa13.12□□□□□ -0.31
CLK3-208ENST00000562626 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
CLK3-208ENST00000562626 KDM6AO15550 1401 aaPredicted RBP13.12□□□□□ -0.31
CLK3-208ENST00000562626 RGPD3A6NKT7 1758 aaPredicted RBP13.12□□□□□ -0.31
CLK3-208ENST00000562626 RGPD4Q7Z3J3 1758 aa13.12□□□□□ -0.31
CLK3-208ENST00000562626 TAF1LQ8IZX4 1826 aa13.11□□□□□ -0.31
CLK3-208ENST00000562626 PAPPAQ13219 1627 aa13.11□□□□□ -0.31
CLK3-208ENST00000562626 PRKAR2BP31323 418 aa13.11□□□□□ -0.31
CLK3-208ENST00000562626 NUP188Q5SRE5 1749 aa13.1□□□□□ -0.31
CLK3-208ENST00000562626 MTHFSDQ2M296 383 aaKnown RBP13.1□□□□□ -0.31
CLK3-208ENST00000562626 PLEKHF1Q96S99 279 aa13.1□□□□□ -0.31
CLK3-208ENST00000562626 BCL9O00512 1426 aa13.1□□□□□ -0.31
CLK3-208ENST00000562626 PLEKHG2Q9H7P9 1386 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 KCNQ2O43526 872 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 PHKG2P15735 406 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 MIER1Q8N108 512 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 ACSBG1Q96GR2 724 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 ADAMTS8Q9UP79 889 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 NUDCQ9Y266 331 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 UBR2Q8IWV8 1755 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 PCDH11XQ9BZA7 1347 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 PCDH11YQ9BZA8 1340 aa13.09□□□□□ -0.31
CLK3-208ENST00000562626 ZNF530Q6P9A1 599 aaPredicted RBP13.08□□□□□ -0.32
CLK3-208ENST00000562626 CCDC146Q8IYE0 955 aa13.08□□□□□ -0.32
CLK3-208ENST00000562626 MRS2Q9HD23 443 aa13.08□□□□□ -0.32
CLK3-208ENST00000562626 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLK3-208ENST00000562626 TUBGCP6Q96RT7 1819 aa13.08□□□□□ -0.32
CLK3-208ENST00000562626 TRIM37O94972 964 aa13.07□□□□□ -0.32
CLK3-208ENST00000562626 PLEKHO1Q53GL0 409 aaPredicted RBP13.07□□□□□ -0.32
CLK3-208ENST00000562626 FAM196AQ6ZSG2 479 aa13.07□□□□□ -0.32
CLK3-208ENST00000562626 PNISRQ8TF01 805 aaKnown RBP13.07□□□□□ -0.32
CLK3-208ENST00000562626 SPG7Q9UQ90 795 aa13.07□□□□□ -0.32
CLK3-208ENST00000562626 KDM3BQ7LBC6 1761 aa13.07□□□□□ -0.32
CLK3-208ENST00000562626 MRC1P22897 1456 aa13.06□□□□□ -0.32
CLK3-208ENST00000562626 SENP3-EIF4A1A0A087X0R7 540 aa13.06□□□□□ -0.32
CLK3-208ENST00000562626 FCHSD2O94868 740 aa13.06□□□□□ -0.32
CLK3-208ENST00000562626 NKX1-1Q15270 411 aaPredicted RBP13.05□□□□□ -0.32
CLK3-208ENST00000562626 IFNL2Q8IZJ0 200 aa13.05□□□□□ -0.32
CLK3-208ENST00000562626 COL5A3P25940 1745 aaPredicted RBP13.05□□□□□ -0.32
CLK3-208ENST00000562626 TJP1Q07157 1748 aa13.05□□□□□ -0.32
CLK3-208ENST00000562626 AMOTQ4VCS5 1084 aa13.04□□□□□ -0.32
CLK3-208ENST00000562626 MPRIPQ6WCQ1 1025 aa13.04□□□□□ -0.32
CLK3-208ENST00000562626 LGR6Q9HBX8 967 aa13.04□□□□□ -0.32
CLK3-208ENST00000562626 C5P01031 1676 aa13.04□□□□□ -0.32
CLK3-208ENST00000562626 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
CLK3-208ENST00000562626 WDR43Q15061 677 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLK3-208ENST00000562626 DEFB132Q7Z7B7 95 aa13.03□□□□□ -0.32
CLK3-208ENST00000562626 MAP3K5Q99683 1374 aa13.03□□□□□ -0.32
CLK3-208ENST00000562626 MYH14Q7Z406 1995 aaKnown RBP13.02□□□□□ -0.32
CLK3-208ENST00000562626 RRP7AQ9Y3A4 280 aaKnown RBP13.02□□□□□ -0.33
CLK3-208ENST00000562626 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
CLK3-208ENST00000562626 AKAP4Q5JQC9 854 aa13.01□□□□□ -0.33
CLK3-208ENST00000562626 IL17REQ8NFR9 667 aa13.01□□□□□ -0.33
CLK3-208ENST00000562626 ZNF831Q5JPB2 1677 aa13.01□□□□□ -0.33
CLK3-208ENST00000562626 CICQ96RK0 1608 aaPredicted RBP13□□□□□ -0.33
CLK3-208ENST00000562626 RNMTO43148 476 aaKnown RBP13□□□□□ -0.33
CLK3-208ENST00000562626 YY1P25490 414 aa13□□□□□ -0.33
CLK3-208ENST00000562626 NFE2L2Q16236 605 aa13□□□□□ -0.33
CLK3-208ENST00000562626 C1orf141Q5JVX7 400 aa13□□□□□ -0.33
CLK3-208ENST00000562626 GAS2L2Q8NHY3 880 aa13□□□□□ -0.33
CLK3-208ENST00000562626 SYTL4Q96C24 671 aaPredicted RBP13□□□□□ -0.33
CLK3-208ENST00000562626 BCL11BQ9C0K0 894 aaPredicted RBP13□□□□□ -0.33
CLK3-208ENST00000562626 KCPQ6ZWJ8 1503 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 CEMIPQ8WUJ3 1361 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 CCER2I3L3R5 266 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 TMPOP42166 694 aaKnown RBP12.99□□□□□ -0.33
CLK3-208ENST00000562626 EN1Q05925 392 aaPredicted RBP12.99□□□□□ -0.33
CLK3-208ENST00000562626 MCM10Q7L590 875 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms