RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MYCP01106 439 aaPredicted RBP6.78□□□□□ -1.32
VPS35-203ENST00000562420 RAB15P59190 212 aa6.78□□□□□ -1.32
VPS35-203ENST00000562420 USP4Q13107 963 aa6.78□□□□□ -1.32
VPS35-203ENST00000562420 MRPL14Q6P1L8 145 aaKnown RBP6.78□□□□□ -1.32
VPS35-203ENST00000562420 CYP2U1Q7Z449 544 aa6.78□□□□□ -1.32
VPS35-203ENST00000562420 SLC16A10Q8TF71 515 aa6.78□□□□□ -1.32
VPS35-203ENST00000562420 USP17L5A8MUK1 530 aa6.77□□□□□ -1.33
VPS35-203ENST00000562420 PIK3CDO00329 1044 aa6.77□□□□□ -1.33
VPS35-203ENST00000562420 UPP2O95045 317 aa6.77□□□□□ -1.33
VPS35-203ENST00000562420 GMPRP36959 345 aa6.77□□□□□ -1.33
VPS35-203ENST00000562420 TRIM46Q7Z4K8 759 aa6.77□□□□□ -1.33
VPS35-203ENST00000562420 LINC00528Q8N1L1 170 aa6.77□□□□□ -1.33
VPS35-203ENST00000562420 NXF1Q9UBU9 619 aaKnown RBP6.77□□□□□ -1.33
VPS35-203ENST00000562420 SPINT1O43278 529 aa6.76□□□□□ -1.33
VPS35-203ENST00000562420 SKIP12755 728 aa6.76□□□□□ -1.33
VPS35-203ENST00000562420 SCARF1Q14162 830 aa6.76□□□□□ -1.33
VPS35-203ENST00000562420 EML3Q32P44 896 aa6.76□□□□□ -1.33
VPS35-203ENST00000562420 OSBPL3Q9H4L5 887 aa6.76□□□□□ -1.33
VPS35-203ENST00000562420 CYLDQ9NQC7 956 aa6.76□□□□□ -1.33
VPS35-203ENST00000562420 ZNF777Q9ULD5 760 aaPredicted RBP6.76□□□□□ -1.33
VPS35-203ENST00000562420 ATP5J2-PTCD1G3V325 749 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 GNRH1P01148 92 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 ADD1P35611 737 aaKnown RBP6.75□□□□□ -1.33
VPS35-203ENST00000562420 PTGIRP43119 386 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 SCTRP47872 440 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 CBLBQ13191 982 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 CDCA7Q9BWT1 371 aaPredicted RBP6.75□□□□□ -1.33
VPS35-203ENST00000562420 PPP1R12CQ9BZL4 782 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 TIMELESSQ9UNS1 1208 aa6.75□□□□□ -1.33
VPS35-203ENST00000562420 MAFBQ9Y5Q3 323 aaPredicted RBP6.75□□□□□ -1.33
VPS35-203ENST00000562420 USP17L3A6NCW0 530 aa6.74□□□□□ -1.33
VPS35-203ENST00000562420 USP17L4A6NCW7 530 aa6.74□□□□□ -1.33
VPS35-203ENST00000562420 PALM3A6NDB9 673 aaPredicted RBP6.74□□□□□ -1.33
VPS35-203ENST00000562420 WASLO00401 505 aaPredicted RBP6.74□□□□□ -1.33
VPS35-203ENST00000562420 USP17L2Q6R6M4 530 aa6.74□□□□□ -1.33
VPS35-203ENST00000562420 TBC1D9Q6ZT07 1266 aa6.74□□□□□ -1.33
VPS35-203ENST00000562420 USP17L1Q7RTZ2 530 aa6.74□□□□□ -1.33
VPS35-203ENST00000562420 KDF1Q8NAX2 398 aaPredicted RBP6.74□□□□□ -1.33
VPS35-203ENST00000562420 ESF1Q9H501 851 aaKnown RBP6.74□□□□□ -1.33
VPS35-203ENST00000562420 NOD1Q9Y239 953 aa6.74□□□□□ -1.33
VPS35-203ENST00000562420 LORP23490 312 aaPredicted RBP6.73□□□□□ -1.33
VPS35-203ENST00000562420 GPC1P35052 558 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 NCOA4Q13772 614 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 TSGA10IPQ3SY00 556 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 OXLD1Q5BKU9 147 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 TRIM50Q86XT4 487 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 SERPINA10Q9UK55 444 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 ERBB4Q15303 1308 aa6.73□□□□□ -1.33
VPS35-203ENST00000562420 CLN3Q13286 438 aa6.72□□□□□ -1.33
VPS35-203ENST00000562420 ZSCAN1Q8NBB4 408 aa6.72□□□□□ -1.33
VPS35-203ENST00000562420 IRF7Q92985 503 aa6.72□□□□□ -1.33
VPS35-203ENST00000562420 ZFP42Q96MM3 310 aa6.72□□□□□ -1.33
VPS35-203ENST00000562420 TFIP11Q9UBB9 837 aaKnown RBP6.72□□□□□ -1.33
VPS35-203ENST00000562420 BMP2P12643 396 aa6.71□□□□□ -1.34
VPS35-203ENST00000562420 ATP1A2P50993 1020 aa6.71□□□□□ -1.34
VPS35-203ENST00000562420 ESCO1Q5FWF5 840 aa6.71□□□□□ -1.34
VPS35-203ENST00000562420 CFAP70Q5T0N1 1121 aa6.71□□□□□ -1.34
VPS35-203ENST00000562420 CCDC97Q96F63 343 aaPredicted RBP6.71□□□□□ -1.34
VPS35-203ENST00000562420 PURBQ96QR8 312 aaKnown RBP6.71□□□□□ -1.34
VPS35-203ENST00000562420 SOS2Q07890 1332 aaPredicted RBP6.71□□□□□ -1.34
VPS35-203ENST00000562420 H3BM21 787 aa6.7□□□□□ -1.34
VPS35-203ENST00000562420 RELBQ01201 579 aa6.7□□□□□ -1.34
VPS35-203ENST00000562420 PCDHGA11Q9Y5H2 935 aa6.7□□□□□ -1.34
VPS35-203ENST00000562420 SOBPA7XYQ1 873 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 RNF144AP50876 292 aaPredicted RBP6.69□□□□□ -1.34
VPS35-203ENST00000562420 GTF2IP78347 998 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 SUZ12Q15022 739 aaKnown RBP6.69□□□□□ -1.34
VPS35-203ENST00000562420 LARGE2Q8N3Y3 721 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 XAGE2Q96GT9 111 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 AGBL1Q96MI9 1066 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 ESYT1Q9BSJ8 1104 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 HRH3Q9Y5N1 445 aa6.69□□□□□ -1.34
VPS35-203ENST00000562420 A0A1W2PRU2 124 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 FAM196BA6NMK8 535 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 TTLL8A6PVC2 850 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 SCNN1DP51172 638 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 C6orf118Q5T5N4 469 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 SIX5Q8N196 739 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 ARHGEF10LQ9HCE6 1279 aa6.68□□□□□ -1.34
VPS35-203ENST00000562420 MKRN1Q9UHC7 482 aaKnown RBP6.68□□□□□ -1.34
VPS35-203ENST00000562420 M0R2N6 131 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 INHAP05111 366 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 KANK4Q5T7N3 995 aaPredicted RBP6.67□□□□□ -1.34
VPS35-203ENST00000562420 FOXD4L5Q5VV16 416 aaPredicted RBP6.67□□□□□ -1.34
VPS35-203ENST00000562420 NPAS3Q8IXF0 933 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 DEPDC4Q8N2C3 294 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 RNF217Q8TC41 542 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 INSM2Q96T92 566 aaPredicted RBP6.67□□□□□ -1.34
VPS35-203ENST00000562420 C1orf115Q9H7X2 142 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 ETNK1Q9HBU6 452 aa6.67□□□□□ -1.34
VPS35-203ENST00000562420 ARID3CA6NKF2 412 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 SPATA31C2B4DYI2 1134 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 IL2RAP01589 272 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 LMOD1P29536 600 aaPredicted RBP6.66□□□□□ -1.34
VPS35-203ENST00000562420 CTSOP43234 321 aaPredicted RBP6.66□□□□□ -1.34
VPS35-203ENST00000562420 GDF10P55107 478 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 CLDN10P78369 228 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.66□□□□□ -1.34
VPS35-203ENST00000562420 WDR44Q5JSH3 913 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 CCDC82Q8N4S0 544 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms