RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 ADH1AP07327 375 aa12.13□□□□□ -0.47
SMG1-204ENST00000561940 ERVK-9P63128 1117 aa12.13□□□□□ -0.47
SMG1-204ENST00000561940 KDF1Q8NAX2 398 aaPredicted RBP12.13□□□□□ -0.47
SMG1-204ENST00000561940 SKIP12755 728 aa12.12□□□□□ -0.47
SMG1-204ENST00000561940 CCDC125Q86Z20 511 aa12.12□□□□□ -0.47
SMG1-204ENST00000561940 HOMEZQ8IX15 550 aa12.12□□□□□ -0.47
SMG1-204ENST00000561940 PLPP7Q8NBV4 271 aa12.11□□□□□ -0.47
SMG1-204ENST00000561940 GLMNQ92990 594 aa12.11□□□□□ -0.47
SMG1-204ENST00000561940 KIFC2Q96AC6 838 aa12.11□□□□□ -0.47
SMG1-204ENST00000561940 INSM2Q96T92 566 aaPredicted RBP12.11□□□□□ -0.47
SMG1-204ENST00000561940 FIGNL2A6NMB9 653 aa12.1□□□□□ -0.47
SMG1-204ENST00000561940 PTGIRP43119 386 aa12.1□□□□□ -0.47
SMG1-204ENST00000561940 OSBPL3Q9H4L5 887 aa12.1□□□□□ -0.47
SMG1-204ENST00000561940 ATP5J2-PTCD1G3V325 749 aa12.09□□□□□ -0.47
SMG1-204ENST00000561940 MYCP01106 439 aaPredicted RBP12.08□□□□□ -0.48
SMG1-204ENST00000561940 CTSOP43234 321 aaPredicted RBP12.08□□□□□ -0.48
SMG1-204ENST00000561940 DEPDC4Q8N2C3 294 aa12.08□□□□□ -0.48
SMG1-204ENST00000561940 CALR3Q96L12 384 aaKnown RBP12.08□□□□□ -0.48
SMG1-204ENST00000561940 SPINT1O43278 529 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 USP4Q13107 963 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 TBC1D9Q6ZT07 1266 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 TRIM52Q96A61 297 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 UCN2Q96RP3 112 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 POLMQ9NP87 494 aaPredicted RBP12.07□□□□□ -0.48
SMG1-204ENST00000561940 RAB6BQ9NRW1 208 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 CHIC2Q9UKJ5 165 aa12.07□□□□□ -0.48
SMG1-204ENST00000561940 MEN1O00255 615 aa12.06□□□□□ -0.48
SMG1-204ENST00000561940 MAN1A2O60476 641 aa12.06□□□□□ -0.48
SMG1-204ENST00000561940 SOS2Q07890 1332 aaPredicted RBP12.06□□□□□ -0.48
SMG1-204ENST00000561940 TTLL8A6PVC2 850 aa12.05□□□□□ -0.48
SMG1-204ENST00000561940 STAU1O95793 577 aaKnown RBP12.05□□□□□ -0.48
SMG1-204ENST00000561940 MAP7D1Q3KQU3 841 aa12.05□□□□□ -0.48
SMG1-204ENST00000561940 CCDC82Q8N4S0 544 aa12.05□□□□□ -0.48
SMG1-204ENST00000561940 A0A1W2PRU2 124 aa12.04□□□□□ -0.48
SMG1-204ENST00000561940 CYP2U1Q7Z449 544 aa12.04□□□□□ -0.48
SMG1-204ENST00000561940 ARHGEF10LQ9HCE6 1279 aa12.04□□□□□ -0.48
SMG1-204ENST00000561940 DNMT3LQ9UJW3 386 aa12.04□□□□□ -0.48
SMG1-204ENST00000561940 NCOA4Q13772 614 aa12.02□□□□□ -0.49
SMG1-204ENST00000561940 ZNF775Q96BV0 537 aaPredicted RBP12.02□□□□□ -0.49
SMG1-204ENST00000561940 TFIP11Q9UBB9 837 aaKnown RBP12.02□□□□□ -0.49
SMG1-204ENST00000561940 USP17L5A8MUK1 530 aa12.01□□□□□ -0.49
SMG1-204ENST00000561940 EML3Q32P44 896 aa12□□□□□ -0.49
SMG1-204ENST00000561940 NFATC2IPQ8NCF5 419 aa12□□□□□ -0.49
SMG1-204ENST00000561940 SIRT1Q96EB6 747 aa12□□□□□ -0.49
SMG1-204ENST00000561940 ATP9BO43861 1147 aa11.99□□□□□ -0.49
SMG1-204ENST00000561940 FOXD4L5Q5VV16 416 aaPredicted RBP11.99□□□□□ -0.49
SMG1-204ENST00000561940 NLRP3Q96P20 1036 aa11.99□□□□□ -0.49
SMG1-204ENST00000561940 USP17L3A6NCW0 530 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 USP17L4A6NCW7 530 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 GNRH1P01148 92 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 VEGFBP49765 207 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 USP17L2Q6R6M4 530 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 USP17L1Q7RTZ2 530 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 PRICKLE2Q7Z3G6 844 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 RNF217Q8TC41 542 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 NOD1Q9Y239 953 aa11.97□□□□□ -0.49
SMG1-204ENST00000561940 PALM3A6NDB9 673 aaPredicted RBP11.96□□□□□ -0.49
SMG1-204ENST00000561940 IL2RAP01589 272 aa11.96□□□□□ -0.49
SMG1-204ENST00000561940 CNKSR1Q969H4 720 aa11.96□□□□□ -0.49
SMG1-204ENST00000561940 PPP1R12CQ9BZL4 782 aa11.96□□□□□ -0.49
SMG1-204ENST00000561940 ETNK1Q9HBU6 452 aa11.96□□□□□ -0.49
SMG1-204ENST00000561940 CLN3Q13286 438 aa11.95□□□□□ -0.5
SMG1-204ENST00000561940 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.95□□□□□ -0.5
SMG1-204ENST00000561940 PCDHGA11Q9Y5H2 935 aa11.95□□□□□ -0.5
SMG1-204ENST00000561940 RHOQP17081 205 aa11.94□□□□□ -0.5
SMG1-204ENST00000561940 RNF144AP50876 292 aaPredicted RBP11.94□□□□□ -0.5
SMG1-204ENST00000561940 GTF2IP78347 998 aa11.94□□□□□ -0.5
SMG1-204ENST00000561940 PSME1Q06323 249 aa11.94□□□□□ -0.5
SMG1-204ENST00000561940 SLC27A3Q5K4L6 730 aa11.94□□□□□ -0.5
SMG1-204ENST00000561940 LMOD1P29536 600 aaPredicted RBP11.93□□□□□ -0.5
SMG1-204ENST00000561940 CENPCQ03188 943 aa11.93□□□□□ -0.5
SMG1-204ENST00000561940 MKRN1Q9UHC7 482 aaKnown RBP11.93□□□□□ -0.5
SMG1-204ENST00000561940 LZTS3O60299 673 aaPredicted RBP11.92□□□□□ -0.5
SMG1-204ENST00000561940 GDF10P55107 478 aa11.92□□□□□ -0.5
SMG1-204ENST00000561940 LYSMD3Q7Z3D4 306 aa11.92□□□□□ -0.5
SMG1-204ENST00000561940 XAGE2Q96GT9 111 aa11.92□□□□□ -0.5
SMG1-204ENST00000561940 ESYT1Q9BSJ8 1104 aa11.92□□□□□ -0.5
SMG1-204ENST00000561940 SERTAD1Q9UHV2 236 aa11.92□□□□□ -0.5
SMG1-204ENST00000561940 MAFBQ9Y5Q3 323 aaPredicted RBP11.92□□□□□ -0.5
SMG1-204ENST00000561940 RFX1P22670 979 aa11.91□□□□□ -0.5
SMG1-204ENST00000561940 SCNN1DP51172 638 aa11.91□□□□□ -0.5
SMG1-204ENST00000561940 PTSQ03393 145 aa11.91□□□□□ -0.5
SMG1-204ENST00000561940 PLEKHM2Q8IWE5 1019 aa11.91□□□□□ -0.5
SMG1-204ENST00000561940 NXF1Q9UBU9 619 aaKnown RBP11.91□□□□□ -0.5
SMG1-204ENST00000561940 TERTO14746 1132 aaKnown RBP11.9□□□□□ -0.5
SMG1-204ENST00000561940 POU4F2Q12837 409 aa11.9□□□□□ -0.5
SMG1-204ENST00000561940 ESCO1Q5FWF5 840 aa11.9□□□□□ -0.5
SMG1-204ENST00000561940 CDCA8Q53HL2 280 aa11.89□□□□□ -0.51
SMG1-204ENST00000561940 GRIP2Q9C0E4 1043 aa11.89□□□□□ -0.51
SMG1-204ENST00000561940 TMEM229AB2RXF0 380 aa11.88□□□□□ -0.51
SMG1-204ENST00000561940 INHAP05111 366 aa11.88□□□□□ -0.51
SMG1-204ENST00000561940 GPC1P35052 558 aa11.88□□□□□ -0.51
SMG1-204ENST00000561940 CLDN10P78369 228 aa11.88□□□□□ -0.51
SMG1-204ENST00000561940 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.88□□□□□ -0.51
SMG1-204ENST00000561940 CCDC97Q96F63 343 aaPredicted RBP11.88□□□□□ -0.51
SMG1-204ENST00000561940 KIAA1024Q9UPX6 916 aa11.88□□□□□ -0.51
SMG1-204ENST00000561940 ZBTB7BO15156 539 aaPredicted RBP11.87□□□□□ -0.51
SMG1-204ENST00000561940 TRIM50Q86XT4 487 aa11.87□□□□□ -0.51
SMG1-204ENST00000561940 OGFOD1Q8N543 542 aa11.87□□□□□ -0.51
SMG1-204ENST00000561940 ZSCAN10Q96SZ4 725 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms