RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 FMN2Q9NZ56 1722 aa8.74□□□□□ -1.01
CAPN3-210ENST00000561817 HS6ST3Q8IZP7 471 aa8.73□□□□□ -1.01
CAPN3-210ENST00000561817 GGNBP2Q9H3C7 697 aa8.73□□□□□ -1.01
CAPN3-210ENST00000561817 ITSN1Q15811 1721 aa8.73□□□□□ -1.01
CAPN3-210ENST00000561817 PNPLA6Q8IY17 1366 aa8.73□□□□□ -1.01
CAPN3-210ENST00000561817 ANKARQ7Z5J8 1434 aa8.72□□□□□ -1.01
CAPN3-210ENST00000561817 MTHFSP49914 203 aa8.72□□□□□ -1.01
CAPN3-210ENST00000561817 ZNF521Q96K83 1311 aa8.72□□□□□ -1.01
CAPN3-210ENST00000561817 RGPD8O14715 1765 aaPredicted RBP8.71□□□□□ -1.01
CAPN3-210ENST00000561817 EIF5BO60841 1220 aaKnown RBP8.71□□□□□ -1.02
CAPN3-210ENST00000561817 PPP1R37O75864 691 aa8.71□□□□□ -1.02
CAPN3-210ENST00000561817 RBM33Q96EV2 1170 aaKnown RBP8.71□□□□□ -1.02
CAPN3-210ENST00000561817 CFAP44Q96MT7 982 aa8.71□□□□□ -1.02
CAPN3-210ENST00000561817 USP6P35125 1406 aa8.71□□□□□ -1.02
CAPN3-210ENST00000561817 LRRC7Q96NW7 1537 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 TNNT2P45379 298 aaPredicted RBP8.7□□□□□ -1.02
CAPN3-210ENST00000561817 KHSRPQ92945 711 aaKnown RBP eCLIP8.7□□□□□ -1.02
CAPN3-210ENST00000561817 TSHZ2Q9NRE2 1034 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 NUDCQ9Y266 331 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 ACEP12821 1306 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 RNF123Q5XPI4 1314 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 AATKQ6ZMQ8 1374 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 ADGRL3Q9HAR2 1447 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 IQSEC2Q5JU85 1478 aa8.7□□□□□ -1.02
CAPN3-210ENST00000561817 SENP3-EIF4A1A0A087X0R7 540 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 SLC34A2O95436 690 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 PDE3BQ13370 1112 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 WDR43Q15061 677 aaKnown RBP eCLIP8.69□□□□□ -1.02
CAPN3-210ENST00000561817 NME9Q86XW9 330 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 SUPT16HQ9Y5B9 1047 aaKnown RBP8.69□□□□□ -1.02
CAPN3-210ENST00000561817 TTC21BQ7Z4L5 1316 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 OVOS2A0A0J9YW53 1432 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 OVOS2Q6IE36 1432 aa8.69□□□□□ -1.02
CAPN3-210ENST00000561817 PROSER2Q86WR7 435 aaPredicted RBP8.68□□□□□ -1.02
CAPN3-210ENST00000561817 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.68□□□□□ -1.02
CAPN3-210ENST00000561817 CERKQ8TCT0 537 aa8.68□□□□□ -1.02
CAPN3-210ENST00000561817 POLKQ9UBT6 870 aa8.68□□□□□ -1.02
CAPN3-210ENST00000561817 USP54Q70EL1 1684 aa8.68□□□□□ -1.02
CAPN3-210ENST00000561817 MAP2P11137 1827 aaKnown RBP8.67□□□□□ -1.02
CAPN3-210ENST00000561817 TMEM94Q12767 1356 aa8.67□□□□□ -1.02
CAPN3-210ENST00000561817 USP31Q70CQ4 1352 aa8.67□□□□□ -1.02
CAPN3-210ENST00000561817 MARF1Q9Y4F3 1742 aaKnown RBP8.67□□□□□ -1.02
CAPN3-210ENST00000561817 PCDHGA4Q9Y5G9 962 aa8.67□□□□□ -1.02
CAPN3-210ENST00000561817 PIK3C2AO00443 1686 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 CDK12Q9NYV4 1490 aaPredicted RBP8.66□□□□□ -1.02
CAPN3-210ENST00000561817 NUTM2FA1L443 756 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 NUDT7P0C024 238 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 FBLN1P23142 703 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 CCDC146Q8IYE0 955 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 TRMT2AQ8IZ69 625 aaKnown RBP8.66□□□□□ -1.02
CAPN3-210ENST00000561817 CDCA7LQ96GN5 454 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 CFAP53Q96M91 514 aa8.66□□□□□ -1.02
CAPN3-210ENST00000561817 ROBO1Q9Y6N7 1651 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 MSH6P52701 1360 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 TTC21AQ8NDW8 1320 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 UBAP1LF5GYI3 381 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 APAF1O14727 1248 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 PIP4K2BP78356 416 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 NGEFQ8N5V2 710 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 PLEKHF1Q96S99 279 aa8.65□□□□□ -1.02
CAPN3-210ENST00000561817 PEAK1Q9H792 1746 aa8.64□□□□□ -1.03
CAPN3-210ENST00000561817 PMFBP1Q8TBY8 1022 aa8.64□□□□□ -1.03
CAPN3-210ENST00000561817 RUNDC1Q96C34 613 aa8.64□□□□□ -1.03
CAPN3-210ENST00000561817 SALL2Q9Y467 1007 aaPredicted RBP8.64□□□□□ -1.03
CAPN3-210ENST00000561817 EMILIN1Q9Y6C2 1016 aa8.64□□□□□ -1.03
CAPN3-210ENST00000561817 NCOA3Q9Y6Q9 1424 aa8.63□□□□□ -1.03
CAPN3-210ENST00000561817 PHLPP1O60346 1717 aa8.63□□□□□ -1.03
CAPN3-210ENST00000561817 IL13P35225 146 aa8.63□□□□□ -1.03
CAPN3-210ENST00000561817 SLFN5Q08AF3 891 aa8.63□□□□□ -1.03
CAPN3-210ENST00000561817 DUSP27Q5VZP5 1158 aa8.63□□□□□ -1.03
CAPN3-210ENST00000561817 COG3Q96JB2 828 aa8.63□□□□□ -1.03
CAPN3-210ENST00000561817 RYDENQ9NUL5 291 aaKnown RBP8.63□□□□□ -1.03
CAPN3-210ENST00000561817 DIAPH1O60610 1272 aaKnown RBP8.62□□□□□ -1.03
CAPN3-210ENST00000561817 CCDC27Q2M243 656 aa8.62□□□□□ -1.03
CAPN3-210ENST00000561817 TCP11L2Q8N4U5 519 aa8.62□□□□□ -1.03
CAPN3-210ENST00000561817 RNF166Q96A37 237 aaPredicted RBP8.62□□□□□ -1.03
CAPN3-210ENST00000561817 RGPD1P0DJD0 1748 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 U2AF1L5P0DN76 240 aaPredicted RBP8.61□□□□□ -1.03
CAPN3-210ENST00000561817 PTGER2P43116 358 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 FOXK1P85037 733 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 U2AF1Q01081 240 aaKnown RBP eCLIP8.61□□□□□ -1.03
CAPN3-210ENST00000561817 ERICH6BQ5W0A0 696 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 WWC1Q8IX03 1113 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 NGDNQ8NEJ9 315 aaKnown RBP8.61□□□□□ -1.03
CAPN3-210ENST00000561817 GPHNQ9NQX3 736 aaPredicted RBP8.61□□□□□ -1.03
CAPN3-210ENST00000561817 LHX6Q9UPM6 363 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 DCCP43146 1447 aa8.61□□□□□ -1.03
CAPN3-210ENST00000561817 TRPM3Q9HCF6 1732 aaPredicted RBP8.6□□□□□ -1.03
CAPN3-210ENST00000561817 C1orf167Q5SNV9 1468 aa8.6□□□□□ -1.03
CAPN3-210ENST00000561817 ATF3P18847 181 aa8.6□□□□□ -1.03
CAPN3-210ENST00000561817 PBX2P40425 430 aa8.6□□□□□ -1.03
CAPN3-210ENST00000561817 RRS1Q15050 365 aaKnown RBP8.6□□□□□ -1.03
CAPN3-210ENST00000561817 ANKRD13DQ6ZTN6 518 aa8.6□□□□□ -1.03
CAPN3-210ENST00000561817 RSPH6AQ9H0K4 717 aa8.6□□□□□ -1.03
CAPN3-210ENST00000561817 MST1RQ04912 1400 aa8.6□□□□□ -1.03
CAPN3-210ENST00000561817 TOM1O60784 492 aa8.59□□□□□ -1.03
CAPN3-210ENST00000561817 FCHSD2O94868 740 aa8.59□□□□□ -1.03
CAPN3-210ENST00000561817 NEFLP07196 543 aa8.59□□□□□ -1.03
CAPN3-210ENST00000561817 LSM11P83369 360 aaKnown RBP eCLIP8.59□□□□□ -1.03
CAPN3-210ENST00000561817 PLPP6Q8IY26 295 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms