RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 POLKQ9UBT6 870 aa21.5■■□□□ 1.03
VPS39-203ENST00000561797 DOT1LQ8TEK3 1739 aa21.49■■□□□ 1.03
VPS39-203ENST00000561797 ZCRB1Q8TBF4 217 aaKnown RBP21.49■■□□□ 1.03
VPS39-203ENST00000561797 RAPGEF4Q8WZA2 1011 aa21.48■■□□□ 1.03
VPS39-203ENST00000561797 KNSTRNQ9Y448 316 aa21.48■■□□□ 1.03
VPS39-203ENST00000561797 NBPF14Q5TI25 921 aa21.47■■□□□ 1.03
VPS39-203ENST00000561797 WASHC2AQ641Q2 1341 aa21.47■■□□□ 1.03
VPS39-203ENST00000561797 NSD2O96028 1365 aa21.47■■□□□ 1.03
VPS39-203ENST00000561797 TATP17735 454 aaPredicted RBP21.46■■□□□ 1.03
VPS39-203ENST00000561797 MORC1Q86VD1 984 aa21.46■■□□□ 1.03
VPS39-203ENST00000561797 LRP5O75197 1615 aa21.44■■□□□ 1.02
VPS39-203ENST00000561797 PROM2Q8N271 834 aa21.43■■□□□ 1.02
VPS39-203ENST00000561797 TXNRD1Q16881 649 aa21.42■■□□□ 1.02
VPS39-203ENST00000561797 PKD1L3Q7Z443 1732 aa21.42■■□□□ 1.02
VPS39-203ENST00000561797 EYA1Q99502 592 aa21.42■■□□□ 1.02
VPS39-203ENST00000561797 SYTL4Q96C24 671 aaPredicted RBP21.41■■□□□ 1.02
VPS39-203ENST00000561797 EIF4A2Q14240 407 aaKnown RBP21.4■■□□□ 1.02
VPS39-203ENST00000561797 ITGB4P16144 1822 aa21.39■■□□□ 1.02
VPS39-203ENST00000561797 PRIM1P49642 420 aaKnown RBP21.39■■□□□ 1.01
VPS39-203ENST00000561797 AMER1Q5JTC6 1135 aaPredicted RBP21.39■■□□□ 1.01
VPS39-203ENST00000561797 NCAPD2Q15021 1401 aa21.38■■□□□ 1.01
VPS39-203ENST00000561797 ANO8Q9HCE9 1232 aaPredicted RBP21.38■■□□□ 1.01
VPS39-203ENST00000561797 PCDH11XQ9BZA7 1347 aa21.37■■□□□ 1.01
VPS39-203ENST00000561797 PCDH11YQ9BZA8 1340 aa21.37■■□□□ 1.01
VPS39-203ENST00000561797 LY75O60449 1722 aa21.36■■□□□ 1.01
VPS39-203ENST00000561797 PER1O15534 1290 aaPredicted RBP21.36■■□□□ 1.01
VPS39-203ENST00000561797 CNGB1Q14028 1251 aaPredicted RBP21.35■■□□□ 1.01
VPS39-203ENST00000561797 CC2D1BQ5T0F9 858 aaKnown RBP21.35■■□□□ 1.01
VPS39-203ENST00000561797 TOGARAM1Q9Y4F4 1720 aa21.35■■□□□ 1.01
VPS39-203ENST00000561797 CASZ1Q86V15 1759 aa21.33■■□□□ 1.01
VPS39-203ENST00000561797 CYP27B1O15528 508 aa21.33■■□□□ 1.01
VPS39-203ENST00000561797 STK32BQ9NY57 414 aa21.33■■□□□ 1.01
VPS39-203ENST00000561797 SPG7Q9UQ90 795 aa21.33■■□□□ 1.01
VPS39-203ENST00000561797 PAPPAQ13219 1627 aa21.31■■□□□ 1
VPS39-203ENST00000561797 IGSF1Q8N6C5 1336 aa21.3■■□□□ 1
VPS39-203ENST00000561797 SLC15A2Q16348 729 aa21.3■■□□□ 1
VPS39-203ENST00000561797 LRRC4BQ9NT99 713 aa21.3■■□□□ 1
VPS39-203ENST00000561797 MTHFSP49914 203 aa21.28■■□□□ 1
VPS39-203ENST00000561797 KCNQ4P56696 695 aa21.28■■□□□ 1
VPS39-203ENST00000561797 PDGFDQ9GZP0 370 aaPredicted RBP21.28■■□□□ 1
VPS39-203ENST00000561797 TUBGCP6Q96RT7 1819 aa21.27■■□□□ 1
VPS39-203ENST00000561797 MPRIPQ6WCQ1 1025 aa21.27■■□□□ 1
VPS39-203ENST00000561797 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.27■■□□□ 1
VPS39-203ENST00000561797 SLC27A3Q5K4L6 730 aa21.26■□□□□ 0.99
VPS39-203ENST00000561797 SPON1Q9HCB6 807 aa21.26■□□□□ 0.99
VPS39-203ENST00000561797 TAF1LQ8IZX4 1826 aa21.25■□□□□ 0.99
VPS39-203ENST00000561797 AEBP1Q8IUX7 1158 aa21.25■□□□□ 0.99
VPS39-203ENST00000561797 IFNL2Q8IZJ0 200 aa21.25■□□□□ 0.99
VPS39-203ENST00000561797 QSER1Q2KHR3 1735 aa21.24■□□□□ 0.99
VPS39-203ENST00000561797 PHKG2P15735 406 aa21.24■□□□□ 0.99
VPS39-203ENST00000561797 IL13P35225 146 aa21.24■□□□□ 0.99
VPS39-203ENST00000561797 NKX1-1Q15270 411 aaPredicted RBP21.24■□□□□ 0.99
VPS39-203ENST00000561797 ZNF827Q17R98 1081 aa21.24■□□□□ 0.99
VPS39-203ENST00000561797 NPC1L1Q9UHC9 1359 aa21.23■□□□□ 0.99
VPS39-203ENST00000561797 VIRMAQ69YN4 1812 aaKnown RBP21.23■□□□□ 0.99
VPS39-203ENST00000561797 SULT6B1Q6IMI4 303 aa21.23■□□□□ 0.99
VPS39-203ENST00000561797 CCNL1Q9UK58 526 aaPredicted RBP21.23■□□□□ 0.99
VPS39-203ENST00000561797 C5P01031 1676 aa21.23■□□□□ 0.99
VPS39-203ENST00000561797 ZBTB7AO95365 584 aa21.22■□□□□ 0.99
VPS39-203ENST00000561797 PLEKHO1Q53GL0 409 aaPredicted RBP21.22■□□□□ 0.99
VPS39-203ENST00000561797 PIGBQ92521 554 aa21.2■□□□□ 0.98
VPS39-203ENST00000561797 AKT1S1Q96B36 256 aa21.2■□□□□ 0.98
VPS39-203ENST00000561797 PPP1R1BQ9UD71 204 aaPredicted RBP21.2■□□□□ 0.98
VPS39-203ENST00000561797 ATF5Q9Y2D1 282 aaPredicted RBP21.2■□□□□ 0.98
VPS39-203ENST00000561797 ZNF530Q6P9A1 599 aaPredicted RBP21.19■□□□□ 0.98
VPS39-203ENST00000561797 PALLDQ8WX93 1383 aa21.19■□□□□ 0.98
VPS39-203ENST00000561797 PLEKHG2Q9H7P9 1386 aa21.19■□□□□ 0.98
VPS39-203ENST00000561797 SRCAPQ6ZRS2 3230 aa21.19■□□□□ 0.98
VPS39-203ENST00000561797 DIAPH1O60610 1272 aaKnown RBP21.18■□□□□ 0.98
VPS39-203ENST00000561797 AMOTQ4VCS5 1084 aa21.18■□□□□ 0.98
VPS39-203ENST00000561797 TMOD3Q9NYL9 352 aa21.18■□□□□ 0.98
VPS39-203ENST00000561797 HMOX1P09601 288 aa21.17■□□□□ 0.98
VPS39-203ENST00000561797 SMARCC1Q92922 1105 aaPredicted RBP21.17■□□□□ 0.98
VPS39-203ENST00000561797 TFCP2L1Q9NZI6 479 aa21.17■□□□□ 0.98
VPS39-203ENST00000561797 KDRP35968 1356 aa21.17■□□□□ 0.98
VPS39-203ENST00000561797 SCN11AQ9UI33 1791 aa21.17■□□□□ 0.98
VPS39-203ENST00000561797 C1orf141Q5JVX7 400 aa21.15■□□□□ 0.98
VPS39-203ENST00000561797 HSP90AB1P08238 724 aaKnown RBP21.14■□□□□ 0.97
VPS39-203ENST00000561797 MTFR1LQ9H019 292 aa21.14■□□□□ 0.97
VPS39-203ENST00000561797 COL3A1P02461 1466 aaPredicted RBP21.13■□□□□ 0.97
VPS39-203ENST00000561797 C4BP0C0L5 1744 aa21.13■□□□□ 0.97
VPS39-203ENST00000561797 PNPLA7Q6ZV29 1317 aa21.13■□□□□ 0.97
VPS39-203ENST00000561797 DCAF5Q96JK2 942 aa21.13■□□□□ 0.97
VPS39-203ENST00000561797 ASAP1Q9ULH1 1129 aa21.13■□□□□ 0.97
VPS39-203ENST00000561797 KDM6AO15550 1401 aaPredicted RBP21.12■□□□□ 0.97
VPS39-203ENST00000561797 PTGER2P43116 358 aa21.12■□□□□ 0.97
VPS39-203ENST00000561797 ERVV-2B6SEH9 535 aa21.11■□□□□ 0.97
VPS39-203ENST00000561797 U2SURPO15042 1029 aaKnown RBP21.11■□□□□ 0.97
VPS39-203ENST00000561797 UBR3Q6ZT12 1888 aa21.11■□□□□ 0.97
VPS39-203ENST00000561797 MSH5O43196 834 aa21.1■□□□□ 0.97
VPS39-203ENST00000561797 CABP4P57796 275 aa21.1■□□□□ 0.97
VPS39-203ENST00000561797 ATG3Q9NT62 314 aa21.1■□□□□ 0.97
VPS39-203ENST00000561797 LOC102724428A0A0B4J2F2 783 aa21.09■□□□□ 0.97
VPS39-203ENST00000561797 SIK1P57059 783 aa21.09■□□□□ 0.97
VPS39-203ENST00000561797 COL24A1Q17RW2 1714 aa21.09■□□□□ 0.97
VPS39-203ENST00000561797 PPP2R1AP30153 589 aa21.08■□□□□ 0.97
VPS39-203ENST00000561797 CFAP53Q96M91 514 aa21.08■□□□□ 0.97
VPS39-203ENST00000561797 HMGB2P26583 209 aaKnown RBP21.07■□□□□ 0.96
VPS39-203ENST00000561797 AKAP4Q5JQC9 854 aa21.07■□□□□ 0.96
VPS39-203ENST00000561797 SLC16A10Q8TF71 515 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms