RNA–Protein interactions for RNA: ENST00000561731.1

PTPN9-202, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 3

Gene PTPN9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-202ENST00000561731 CC2D2BQ6DHV5 1058 aa9.53□□□□□ -0.88
PTPN9-202ENST00000561731 APBB1O00213 710 aa9.52□□□□□ -0.89
PTPN9-202ENST00000561731 ERVK-9P63128 1117 aa9.52□□□□□ -0.89
PTPN9-202ENST00000561731 KCNMA1Q12791 1236 aa9.52□□□□□ -0.89
PTPN9-202ENST00000561731 PRICKLE2Q7Z3G6 844 aa9.52□□□□□ -0.89
PTPN9-202ENST00000561731 SVOPQ8N4V2 548 aa9.52□□□□□ -0.89
PTPN9-202ENST00000561731 MEN1O00255 615 aa9.51□□□□□ -0.89
PTPN9-202ENST00000561731 GPC1P35052 558 aa9.51□□□□□ -0.89
PTPN9-202ENST00000561731 NDUFB9Q9Y6M9 179 aa9.51□□□□□ -0.89
PTPN9-202ENST00000561731 RNF225M0QZC1 329 aaPredicted RBP9.5□□□□□ -0.89
PTPN9-202ENST00000561731 SLURP2P0DP57 97 aa9.5□□□□□ -0.89
PTPN9-202ENST00000561731 ZNF385CQ66K41 422 aaPredicted RBP9.5□□□□□ -0.89
PTPN9-202ENST00000561731 CYP2U1Q7Z449 544 aa9.5□□□□□ -0.89
PTPN9-202ENST00000561731 ADAMTS8Q9UP79 889 aa9.5□□□□□ -0.89
PTPN9-202ENST00000561731 RHOQP17081 205 aa9.49□□□□□ -0.89
PTPN9-202ENST00000561731 MTMR14Q8NCE2 650 aa9.49□□□□□ -0.89
PTPN9-202ENST00000561731 A0A1W2PRU2 124 aa9.48□□□□□ -0.89
PTPN9-202ENST00000561731 NLRP3Q96P20 1036 aa9.48□□□□□ -0.89
PTPN9-202ENST00000561731 ESF1Q9H501 851 aaKnown RBP9.48□□□□□ -0.89
PTPN9-202ENST00000561731 PCDHB11Q9Y5F2 797 aa9.48□□□□□ -0.89
PTPN9-202ENST00000561731 SLC27A3Q5K4L6 730 aa9.47□□□□□ -0.89
PTPN9-202ENST00000561731 GMCL1Q96IK5 515 aa9.47□□□□□ -0.89
PTPN9-202ENST00000561731 CUEDC1Q9NWM3 386 aaPredicted RBP9.47□□□□□ -0.89
PTPN9-202ENST00000561731 GPR37L1O60883 481 aa9.46□□□□□ -0.9
PTPN9-202ENST00000561731 ADAMTS2O95450 1211 aa9.45□□□□□ -0.9
PTPN9-202ENST00000561731 SCTRP47872 440 aa9.45□□□□□ -0.9
PTPN9-202ENST00000561731 SRSF11Q05519 484 aaKnown RBP9.45□□□□□ -0.9
PTPN9-202ENST00000561731 CLN3Q13286 438 aa9.45□□□□□ -0.9
PTPN9-202ENST00000561731 TRIM22Q8IYM9 498 aa9.45□□□□□ -0.9
PTPN9-202ENST00000561731 WHAMMQ8TF30 809 aa9.45□□□□□ -0.9
PTPN9-202ENST00000561731 ZNF837Q96EG3 531 aaPredicted RBP9.45□□□□□ -0.9
PTPN9-202ENST00000561731 GSK3AP49840 483 aa9.44□□□□□ -0.9
PTPN9-202ENST00000561731 FOXR1Q6PIV2 292 aa9.44□□□□□ -0.9
PTPN9-202ENST00000561731 RIPOR1Q6ZS17 1223 aa9.44□□□□□ -0.9
PTPN9-202ENST00000561731 TMEM151AQ8N4L1 468 aa9.44□□□□□ -0.9
PTPN9-202ENST00000561731 SNRKQ9NRH2 765 aa9.44□□□□□ -0.9
PTPN9-202ENST00000561731 DYRK1BQ9Y463 629 aa9.44□□□□□ -0.9
PTPN9-202ENST00000561731 TRAK2O60296 914 aa9.43□□□□□ -0.9
PTPN9-202ENST00000561731 POU4F2Q12837 409 aa9.43□□□□□ -0.9
PTPN9-202ENST00000561731 GAS6Q14393 721 aa9.43□□□□□ -0.9
PTPN9-202ENST00000561731 OSBPL3Q9H4L5 887 aa9.43□□□□□ -0.9
PTPN9-202ENST00000561731 ARHGEF10LQ9HCE6 1279 aa9.43□□□□□ -0.9
PTPN9-202ENST00000561731 H7C1W4 665 aa9.42□□□□□ -0.9
PTPN9-202ENST00000561731 ARHGEF15O94989 841 aa9.42□□□□□ -0.9
PTPN9-202ENST00000561731 MAP3K10Q02779 954 aa9.42□□□□□ -0.9
PTPN9-202ENST00000561731 RASSF7Q02833 373 aa9.42□□□□□ -0.9
PTPN9-202ENST00000561731 GRIP2Q9C0E4 1043 aa9.42□□□□□ -0.9
PTPN9-202ENST00000561731 GDF11O95390 407 aa9.41□□□□□ -0.9
PTPN9-202ENST00000561731 MARSP56192 900 aaKnown RBP9.41□□□□□ -0.9
PTPN9-202ENST00000561731 NBPF10Q6P3W6 841 aaKnown RBP9.41□□□□□ -0.9
PTPN9-202ENST00000561731 NBPF15Q8N660 670 aa9.41□□□□□ -0.9
PTPN9-202ENST00000561731 GAS2L1Q99501 681 aaPredicted RBP9.41□□□□□ -0.9
PTPN9-202ENST00000561731 MBIPQ9NS73 344 aa9.41□□□□□ -0.9
PTPN9-202ENST00000561731 SPATA31C2B4DYI2 1134 aa9.4□□□□□ -0.9
PTPN9-202ENST00000561731 MYCP01106 439 aaPredicted RBP9.4□□□□□ -0.9
PTPN9-202ENST00000561731 GNRH1P01148 92 aa9.4□□□□□ -0.9
PTPN9-202ENST00000561731 DBN1Q16643 649 aa9.4□□□□□ -0.9
PTPN9-202ENST00000561731 WDR44Q5JSH3 913 aa9.4□□□□□ -0.9
PTPN9-202ENST00000561731 KCTD17Q8N5Z5 321 aa9.4□□□□□ -0.9
PTPN9-202ENST00000561731 PRM3Q9NNZ6 103 aa9.4□□□□□ -0.9
PTPN9-202ENST00000561731 GPR25O00155 361 aa9.39□□□□□ -0.91
PTPN9-202ENST00000561731 LYPD4Q6UWN0 246 aa9.39□□□□□ -0.91
PTPN9-202ENST00000561731 TAS1R3Q7RTX0 852 aa9.39□□□□□ -0.91
PTPN9-202ENST00000561731 TRERF1Q96PN7 1200 aa9.39□□□□□ -0.91
PTPN9-202ENST00000561731 CEP126Q9P2H0 1117 aa9.39□□□□□ -0.91
PTPN9-202ENST00000561731 WASLO00401 505 aaPredicted RBP9.38□□□□□ -0.91
PTPN9-202ENST00000561731 CELA2BP08218 269 aaPredicted RBP9.38□□□□□ -0.91
PTPN9-202ENST00000561731 SCARF2Q96GP6 870 aaPredicted RBP9.38□□□□□ -0.91
PTPN9-202ENST00000561731 TIMMDC1Q9NPL8 285 aa9.38□□□□□ -0.91
PTPN9-202ENST00000561731 RAB6BQ9NRW1 208 aa9.38□□□□□ -0.91
PTPN9-202ENST00000561731 TPRNQ4KMQ1 711 aa9.37□□□□□ -0.91
PTPN9-202ENST00000561731 CNKSR1Q969H4 720 aa9.37□□□□□ -0.91
PTPN9-202ENST00000561731 GTPBP3Q969Y2 492 aaKnown RBP9.37□□□□□ -0.91
PTPN9-202ENST00000561731 CCDC85AQ96PX6 553 aaPredicted RBP9.37□□□□□ -0.91
PTPN9-202ENST00000561731 ESYT1Q9BSJ8 1104 aa9.37□□□□□ -0.91
PTPN9-202ENST00000561731 ENAMQ9NRM1 1142 aa9.37□□□□□ -0.91
PTPN9-202ENST00000561731 TBC1D2BQ9UPU7 963 aa9.37□□□□□ -0.91
PTPN9-202ENST00000561731 IRS1P35568 1242 aa9.36□□□□□ -0.91
PTPN9-202ENST00000561731 EIF4G2P78344 907 aaKnown RBP eCLIP9.36□□□□□ -0.91
PTPN9-202ENST00000561731 IGF1RP08069 1367 aa9.36□□□□□ -0.91
PTPN9-202ENST00000561731 IL2RAP01589 272 aa9.35□□□□□ -0.91
PTPN9-202ENST00000561731 F11P03951 625 aa9.35□□□□□ -0.91
PTPN9-202ENST00000561731 KANK3Q6NY19 840 aa9.35□□□□□ -0.91
PTPN9-202ENST00000561731 CDCA7Q9BWT1 371 aaPredicted RBP9.35□□□□□ -0.91
PTPN9-202ENST00000561731 NUCKS1Q9H1E3 243 aaKnown RBP9.35□□□□□ -0.91
PTPN9-202ENST00000561731 GTF2E1P29083 439 aaPredicted RBP9.34□□□□□ -0.91
PTPN9-202ENST00000561731 CENPCQ03188 943 aa9.34□□□□□ -0.91
PTPN9-202ENST00000561731 ESCO1Q5FWF5 840 aa9.33□□□□□ -0.92
PTPN9-202ENST00000561731 ZSCAN10Q96SZ4 725 aaPredicted RBP9.33□□□□□ -0.92
PTPN9-202ENST00000561731 NSFL1CQ9UNZ2 370 aaKnown RBP9.33□□□□□ -0.92
PTPN9-202ENST00000561731 DOLKQ9UPQ8 538 aa9.33□□□□□ -0.92
PTPN9-202ENST00000561731 DNMT3AQ9Y6K1 912 aaPredicted RBP9.33□□□□□ -0.92
PTPN9-202ENST00000561731 MX2P20592 715 aa9.32□□□□□ -0.92
PTPN9-202ENST00000561731 SLFNL1Q499Z3 407 aa9.32□□□□□ -0.92
PTPN9-202ENST00000561731 GNASQ5JWF2 1037 aa9.32□□□□□ -0.92
PTPN9-202ENST00000561731 XAGE2Q96GT9 111 aa9.32□□□□□ -0.92
PTPN9-202ENST00000561731 BCRP11274 1271 aa9.31□□□□□ -0.92
PTPN9-202ENST00000561731 USP4Q13107 963 aa9.31□□□□□ -0.92
PTPN9-202ENST00000561731 HRH3Q9Y5N1 445 aa9.31□□□□□ -0.92
PTPN9-202ENST00000561731 A0A1B0GTH6 734 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms