RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 ALG2Q9H553 416 aa7.08□□□□□ -1.28
HERC1-215ENST00000561436 POLMQ9NP87 494 aaPredicted RBP7.08□□□□□ -1.28
HERC1-215ENST00000561436 DOLKQ9UPQ8 538 aa7.08□□□□□ -1.28
HERC1-215ENST00000561436 SOS2Q07890 1332 aaPredicted RBP7.07□□□□□ -1.28
HERC1-215ENST00000561436 A6NJR5 290 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 MEN1O00255 615 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 SPINT1O43278 529 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 PTGIRP43119 386 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 LCE2CQ5TA81 110 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 HDGFL1Q5TGJ6 251 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 RNF20Q5VTR2 975 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 FNBP4Q8N3X1 1017 aaPredicted RBP7.07□□□□□ -1.28
HERC1-215ENST00000561436 ARXQ96QS3 562 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 ARHGEF10LQ9HCE6 1279 aa7.07□□□□□ -1.28
HERC1-215ENST00000561436 TTLL8A6PVC2 850 aa7.06□□□□□ -1.28
HERC1-215ENST00000561436 MCCD1P59942 119 aaPredicted RBP7.06□□□□□ -1.28
HERC1-215ENST00000561436 FOXD4L5Q5VV16 416 aaPredicted RBP7.06□□□□□ -1.28
HERC1-215ENST00000561436 PLPP7Q8NBV4 271 aa7.06□□□□□ -1.28
HERC1-215ENST00000561436 ATP5J2-PTCD1G3V325 749 aa7.05□□□□□ -1.28
HERC1-215ENST00000561436 SKIP12755 728 aa7.05□□□□□ -1.28
HERC1-215ENST00000561436 UCN2Q96RP3 112 aa7.05□□□□□ -1.28
HERC1-215ENST00000561436 A0A1W2PRU2 124 aa7.04□□□□□ -1.28
HERC1-215ENST00000561436 RHOQP17081 205 aa7.04□□□□□ -1.28
HERC1-215ENST00000561436 TBC1D9Q6ZT07 1266 aa7.04□□□□□ -1.28
HERC1-215ENST00000561436 GLMNQ92990 594 aa7.04□□□□□ -1.28
HERC1-215ENST00000561436 ZNF777Q9ULD5 760 aaPredicted RBP7.04□□□□□ -1.28
HERC1-215ENST00000561436 TRAK2O60296 914 aa7.03□□□□□ -1.28
HERC1-215ENST00000561436 RNF217Q8TC41 542 aa7.03□□□□□ -1.28
HERC1-215ENST00000561436 NFX1Q12986 1120 aaKnown RBP7.02□□□□□ -1.29
HERC1-215ENST00000561436 PRICKLE2Q7Z3G6 844 aa7.02□□□□□ -1.29
HERC1-215ENST00000561436 HOMEZQ8IX15 550 aa7.02□□□□□ -1.29
HERC1-215ENST00000561436 ZNF592Q92610 1267 aa7.02□□□□□ -1.29
HERC1-215ENST00000561436 ESF1Q9H501 851 aaKnown RBP7.02□□□□□ -1.29
HERC1-215ENST00000561436 CHIC2Q9UKJ5 165 aa7.02□□□□□ -1.29
HERC1-215ENST00000561436 TERTO14746 1132 aaKnown RBP7.01□□□□□ -1.29
HERC1-215ENST00000561436 MYCP01106 439 aaPredicted RBP7.01□□□□□ -1.29
HERC1-215ENST00000561436 IL2RAP01589 272 aa7.01□□□□□ -1.29
HERC1-215ENST00000561436 SOX11P35716 441 aa7.01□□□□□ -1.29
HERC1-215ENST00000561436 NCOA4Q13772 614 aa7.01□□□□□ -1.29
HERC1-215ENST00000561436 CYP2U1Q7Z449 544 aa7.01□□□□□ -1.29
HERC1-215ENST00000561436 USP17L5A8MUK1 530 aa7□□□□□ -1.29
HERC1-215ENST00000561436 PTSQ03393 145 aa7□□□□□ -1.29
HERC1-215ENST00000561436 ETNK1Q9HBU6 452 aa7□□□□□ -1.29
HERC1-215ENST00000561436 ERBB4Q15303 1308 aa7□□□□□ -1.29
HERC1-215ENST00000561436 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.99□□□□□ -1.29
HERC1-215ENST00000561436 NXF1Q9UBU9 619 aaKnown RBP6.99□□□□□ -1.29
HERC1-215ENST00000561436 WFS1O76024 890 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 SCNN1DP51172 638 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 POU4F2Q12837 409 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 USP4Q13107 963 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 TREML4Q6UXN2 200 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 CNKSR1Q969H4 720 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 CALR3Q96L12 384 aaKnown RBP6.98□□□□□ -1.29
HERC1-215ENST00000561436 NLRP3Q96P20 1036 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 SERTAD1Q9UHV2 236 aa6.98□□□□□ -1.29
HERC1-215ENST00000561436 SENP3-EIF4A1A0A087X0R7 540 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 USP17L3A6NCW0 530 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 USP17L4A6NCW7 530 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 PPFIA3O75145 1194 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 PHKA2P46019 1235 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 CLN3Q13286 438 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 SLC27A3Q5K4L6 730 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 LCE2AQ5TA79 106 aaPredicted RBP6.97□□□□□ -1.29
HERC1-215ENST00000561436 USP17L2Q6R6M4 530 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 USP17L1Q7RTZ2 530 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 TFIP11Q9UBB9 837 aaKnown RBP6.97□□□□□ -1.29
HERC1-215ENST00000561436 KIAA1024Q9UPX6 916 aa6.97□□□□□ -1.29
HERC1-215ENST00000561436 ARID3CA6NKF2 412 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 H3BM21 787 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 RNF144AP50876 292 aaPredicted RBP6.96□□□□□ -1.3
HERC1-215ENST00000561436 GDF10P55107 478 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 CENPCQ03188 943 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 PSME1Q06323 249 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 EML3Q32P44 896 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 MAP7D1Q3KQU3 841 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 LYSMD3Q7Z3D4 306 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 CCDC125Q86Z20 511 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 CCDC155Q8N6L0 562 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 PCDHGA11Q9Y5H2 935 aa6.96□□□□□ -1.3
HERC1-215ENST00000561436 TMEM229AB2RXF0 380 aa6.95□□□□□ -1.3
HERC1-215ENST00000561436 ATP9BO43861 1147 aa6.95□□□□□ -1.3
HERC1-215ENST00000561436 GNRH1P01148 92 aa6.95□□□□□ -1.3
HERC1-215ENST00000561436 GTF2IP78347 998 aa6.95□□□□□ -1.3
HERC1-215ENST00000561436 CCDC97Q96F63 343 aaPredicted RBP6.95□□□□□ -1.3
HERC1-215ENST00000561436 ARID3AQ99856 593 aa6.95□□□□□ -1.3
HERC1-215ENST00000561436 CUEDC1Q9NWM3 386 aaPredicted RBP6.95□□□□□ -1.3
HERC1-215ENST00000561436 USP3Q9Y6I4 520 aa6.95□□□□□ -1.3
HERC1-215ENST00000561436 PALM3A6NDB9 673 aaPredicted RBP6.94□□□□□ -1.3
HERC1-215ENST00000561436 LGR5O75473 907 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 GMPRP36959 345 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 CLDN10P78369 228 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 CDCA8Q53HL2 280 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
HERC1-215ENST00000561436 ZNF594Q96JF6 807 aaPredicted RBP6.94□□□□□ -1.3
HERC1-215ENST00000561436 ESYT1Q9BSJ8 1104 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 FHDC1Q9C0D6 1143 aaPredicted RBP6.94□□□□□ -1.3
HERC1-215ENST00000561436 GRIP2Q9C0E4 1043 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 HRH3Q9Y5N1 445 aa6.94□□□□□ -1.3
HERC1-215ENST00000561436 SLC35F4A4IF30 521 aa6.93□□□□□ -1.3
HERC1-215ENST00000561436 TLR1Q15399 786 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms