RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 SMG6Q86US8 1419 aaKnown RBP22.14■■□□□ 1.14
LMX1B-204ENST00000561065 NBPF14Q5TI25 921 aa22.13■■□□□ 1.13
LMX1B-204ENST00000561065 PKD1L3Q7Z443 1732 aa22.13■■□□□ 1.13
LMX1B-204ENST00000561065 NCAPD2Q15021 1401 aa22.12■■□□□ 1.13
LMX1B-204ENST00000561065 TXNRD1Q16881 649 aa22.11■■□□□ 1.13
LMX1B-204ENST00000561065 CGNL1Q0VF96 1302 aa22.11■■□□□ 1.13
LMX1B-204ENST00000561065 TOGARAM1Q9Y4F4 1720 aa22.11■■□□□ 1.13
LMX1B-204ENST00000561065 DDX54Q8TDD1 881 aaKnown RBP22.1■■□□□ 1.13
LMX1B-204ENST00000561065 NSD2O96028 1365 aa22.1■■□□□ 1.13
LMX1B-204ENST00000561065 LY75O60449 1722 aa22.1■■□□□ 1.13
LMX1B-204ENST00000561065 PDGFDQ9GZP0 370 aaPredicted RBP22.08■■□□□ 1.13
LMX1B-204ENST00000561065 TUBGCP6Q96RT7 1819 aa22.07■■□□□ 1.12
LMX1B-204ENST00000561065 ZCRB1Q8TBF4 217 aaKnown RBP22.06■■□□□ 1.12
LMX1B-204ENST00000561065 PANK3Q9H999 370 aa22.05■■□□□ 1.12
LMX1B-204ENST00000561065 POLKQ9UBT6 870 aa22.04■■□□□ 1.12
LMX1B-204ENST00000561065 QSER1Q2KHR3 1735 aa22.03■■□□□ 1.12
LMX1B-204ENST00000561065 WASHC2AQ641Q2 1341 aa22.03■■□□□ 1.12
LMX1B-204ENST00000561065 PPM1GO15355 546 aaPredicted RBP22.03■■□□□ 1.12
LMX1B-204ENST00000561065 LRRC4BQ9NT99 713 aa22.03■■□□□ 1.12
LMX1B-204ENST00000561065 ITGB4P16144 1822 aa22.02■■□□□ 1.12
LMX1B-204ENST00000561065 RAPGEF4Q8WZA2 1011 aa22.02■■□□□ 1.12
LMX1B-204ENST00000561065 TATP17735 454 aaPredicted RBP22.01■■□□□ 1.11
LMX1B-204ENST00000561065 PRIM1P49642 420 aaKnown RBP22.01■■□□□ 1.11
LMX1B-204ENST00000561065 SLC15A2Q16348 729 aa22.01■■□□□ 1.11
LMX1B-204ENST00000561065 TNNT2P45379 298 aaPredicted RBP22■■□□□ 1.11
LMX1B-204ENST00000561065 ZNF827Q17R98 1081 aa22■■□□□ 1.11
LMX1B-204ENST00000561065 STK32BQ9NY57 414 aa22■■□□□ 1.11
LMX1B-204ENST00000561065 KIF7Q2M1P5 1343 aa21.99■■□□□ 1.11
LMX1B-204ENST00000561065 SYTL4Q96C24 671 aaPredicted RBP21.99■■□□□ 1.11
LMX1B-204ENST00000561065 SPON1Q9HCB6 807 aa21.99■■□□□ 1.11
LMX1B-204ENST00000561065 PCDH11XQ9BZA7 1347 aa21.98■■□□□ 1.11
LMX1B-204ENST00000561065 PCDH11YQ9BZA8 1340 aa21.98■■□□□ 1.11
LMX1B-204ENST00000561065 CYP27B1O15528 508 aa21.98■■□□□ 1.11
LMX1B-204ENST00000561065 EYA1Q99502 592 aa21.97■■□□□ 1.11
LMX1B-204ENST00000561065 ZBTB7AO95365 584 aa21.96■■□□□ 1.11
LMX1B-204ENST00000561065 EIF4A2Q14240 407 aaKnown RBP21.96■■□□□ 1.11
LMX1B-204ENST00000561065 C5P01031 1676 aa21.95■■□□□ 1.1
LMX1B-204ENST00000561065 TAF1LQ8IZX4 1826 aa21.95■■□□□ 1.1
LMX1B-204ENST00000561065 KCNQ4P56696 695 aa21.95■■□□□ 1.1
LMX1B-204ENST00000561065 COL24A1Q17RW2 1714 aa21.93■■□□□ 1.1
LMX1B-204ENST00000561065 PTGER2P43116 358 aa21.93■■□□□ 1.1
LMX1B-204ENST00000561065 AKT1S1Q96B36 256 aa21.93■■□□□ 1.1
LMX1B-204ENST00000561065 SLC27A3Q5K4L6 730 aa21.92■■□□□ 1.1
LMX1B-204ENST00000561065 IGSF1Q8N6C5 1336 aa21.91■■□□□ 1.1
LMX1B-204ENST00000561065 AMER1Q5JTC6 1135 aaPredicted RBP21.9■■□□□ 1.1
LMX1B-204ENST00000561065 ATF5Q9Y2D1 282 aaPredicted RBP21.9■■□□□ 1.1
LMX1B-204ENST00000561065 SGIP1Q9BQI5 828 aa21.89■■□□□ 1.1
LMX1B-204ENST00000561065 PPP1R1BQ9UD71 204 aaPredicted RBP21.89■■□□□ 1.1
LMX1B-204ENST00000561065 MORC1Q86VD1 984 aa21.87■■□□□ 1.09
LMX1B-204ENST00000561065 MTFR1LQ9H019 292 aa21.87■■□□□ 1.09
LMX1B-204ENST00000561065 KNSTRNQ9Y448 316 aa21.87■■□□□ 1.09
LMX1B-204ENST00000561065 PNPLA7Q6ZV29 1317 aa21.87■■□□□ 1.09
LMX1B-204ENST00000561065 NKX1-1Q15270 411 aaPredicted RBP21.86■■□□□ 1.09
LMX1B-204ENST00000561065 CCNL1Q9UK58 526 aaPredicted RBP21.86■■□□□ 1.09
LMX1B-204ENST00000561065 PALLDQ8WX93 1383 aa21.86■■□□□ 1.09
LMX1B-204ENST00000561065 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.85■■□□□ 1.09
LMX1B-204ENST00000561065 SPG7Q9UQ90 795 aa21.85■■□□□ 1.09
LMX1B-204ENST00000561065 PLEKHG2Q9H7P9 1386 aa21.85■■□□□ 1.09
LMX1B-204ENST00000561065 C4BP0C0L5 1744 aa21.85■■□□□ 1.09
LMX1B-204ENST00000561065 MPRIPQ6WCQ1 1025 aa21.84■■□□□ 1.09
LMX1B-204ENST00000561065 PER1O15534 1290 aaPredicted RBP21.83■■□□□ 1.09
LMX1B-204ENST00000561065 PHKG2P15735 406 aa21.83■■□□□ 1.09
LMX1B-204ENST00000561065 AEBP1Q8IUX7 1158 aa21.82■■□□□ 1.08
LMX1B-204ENST00000561065 PIGBQ92521 554 aa21.82■■□□□ 1.08
LMX1B-204ENST00000561065 UBR3Q6ZT12 1888 aa21.82■■□□□ 1.08
LMX1B-204ENST00000561065 UTRNP46939 3433 aa21.8■■□□□ 1.08
LMX1B-204ENST00000561065 KDM6AO15550 1401 aaPredicted RBP21.8■■□□□ 1.08
LMX1B-204ENST00000561065 KDRP35968 1356 aa21.8■■□□□ 1.08
LMX1B-204ENST00000561065 IFNL2Q8IZJ0 200 aa21.79■■□□□ 1.08
LMX1B-204ENST00000561065 TFCP2L1Q9NZI6 479 aa21.79■■□□□ 1.08
LMX1B-204ENST00000561065 IL13P35225 146 aa21.78■■□□□ 1.08
LMX1B-204ENST00000561065 FHDC1Q9C0D6 1143 aaPredicted RBP21.78■■□□□ 1.08
LMX1B-204ENST00000561065 VIRMAQ69YN4 1812 aaKnown RBP21.77■■□□□ 1.08
LMX1B-204ENST00000561065 COL3A1P02461 1466 aaPredicted RBP21.77■■□□□ 1.08
LMX1B-204ENST00000561065 SCN11AQ9UI33 1791 aa21.76■■□□□ 1.07
LMX1B-204ENST00000561065 CC2D1BQ5T0F9 858 aaKnown RBP21.76■■□□□ 1.07
LMX1B-204ENST00000561065 AMIGO3Q86WK7 504 aa21.76■■□□□ 1.07
LMX1B-204ENST00000561065 COL5A3P25940 1745 aaPredicted RBP21.75■■□□□ 1.07
LMX1B-204ENST00000561065 SLC16A10Q8TF71 515 aa21.75■■□□□ 1.07
LMX1B-204ENST00000561065 TMOD3Q9NYL9 352 aa21.75■■□□□ 1.07
LMX1B-204ENST00000561065 ZNF831Q5JPB2 1677 aa21.75■■□□□ 1.07
LMX1B-204ENST00000561065 MAP3K5Q99683 1374 aa21.74■■□□□ 1.07
LMX1B-204ENST00000561065 NPC1L1Q9UHC9 1359 aa21.74■■□□□ 1.07
LMX1B-204ENST00000561065 COL23A1Q86Y22 540 aaPredicted RBP21.74■■□□□ 1.07
LMX1B-204ENST00000561065 SMARCC1Q92922 1105 aaPredicted RBP21.74■■□□□ 1.07
LMX1B-204ENST00000561065 ARXQ96QS3 562 aa21.74■■□□□ 1.07
LMX1B-204ENST00000561065 SYT17Q9BSW7 474 aa21.74■■□□□ 1.07
LMX1B-204ENST00000561065 ASAP1Q9ULH1 1129 aa21.74■■□□□ 1.07
LMX1B-204ENST00000561065 MTHFSP49914 203 aa21.73■■□□□ 1.07
LMX1B-204ENST00000561065 SULT6B1Q6IMI4 303 aa21.73■■□□□ 1.07
LMX1B-204ENST00000561065 ZNF530Q6P9A1 599 aaPredicted RBP21.73■■□□□ 1.07
LMX1B-204ENST00000561065 LOC102724428A0A0B4J2F2 783 aa21.71■■□□□ 1.07
LMX1B-204ENST00000561065 SIK1P57059 783 aa21.71■■□□□ 1.07
LMX1B-204ENST00000561065 PLEKHO1Q53GL0 409 aaPredicted RBP21.71■■□□□ 1.07
LMX1B-204ENST00000561065 LINC00116Q8NCU8 138 aa21.71■■□□□ 1.07
LMX1B-204ENST00000561065 ATG3Q9NT62 314 aa21.71■■□□□ 1.07
LMX1B-204ENST00000561065 GOLGB1Q14789 3259 aaKnown RBP21.7■■□□□ 1.06
LMX1B-204ENST00000561065 ITPK1Q13572 414 aa21.7■■□□□ 1.06
LMX1B-204ENST00000561065 SMIM5Q71RC9 77 aa21.7■■□□□ 1.06
LMX1B-204ENST00000561065 ADAMTS7Q9UKP4 1686 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms