RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 MYOM1P52179 1685 aa22.5■■□□□ 1.19
SNX1-213ENST00000561026 FLT4P35916 1363 aa22.5■■□□□ 1.19
SNX1-213ENST00000561026 LRRC4BQ9NT99 713 aa22.5■■□□□ 1.19
SNX1-213ENST00000561026 KIF20BQ96Q89 1820 aa22.49■■□□□ 1.19
SNX1-213ENST00000561026 RAPGEF4Q8WZA2 1011 aa22.49■■□□□ 1.19
SNX1-213ENST00000561026 SYTL4Q96C24 671 aaPredicted RBP22.49■■□□□ 1.19
SNX1-213ENST00000561026 PTGER2P43116 358 aa22.48■■□□□ 1.19
SNX1-213ENST00000561026 ATF5Q9Y2D1 282 aaPredicted RBP22.48■■□□□ 1.19
SNX1-213ENST00000561026 SLC27A3Q5K4L6 730 aa22.47■■□□□ 1.19
SNX1-213ENST00000561026 EMILIN1Q9Y6C2 1016 aa22.47■■□□□ 1.19
SNX1-213ENST00000561026 CCER1Q8TC90 406 aaPredicted RBP22.46■■□□□ 1.19
SNX1-213ENST00000561026 MTFR1LQ9H019 292 aa22.46■■□□□ 1.19
SNX1-213ENST00000561026 PAPPAQ13219 1627 aa22.45■■□□□ 1.18
SNX1-213ENST00000561026 TATP17735 454 aaPredicted RBP22.45■■□□□ 1.18
SNX1-213ENST00000561026 ZNF827Q17R98 1081 aa22.45■■□□□ 1.18
SNX1-213ENST00000561026 EIF4G2P78344 907 aaKnown RBP eCLIP22.44■■□□□ 1.18
SNX1-213ENST00000561026 POLR3GLQ9BT43 218 aa22.44■■□□□ 1.18
SNX1-213ENST00000561026 NSD2O96028 1365 aa22.43■■□□□ 1.18
SNX1-213ENST00000561026 SHANK3Q9BYB0 1731 aa22.43■■□□□ 1.18
SNX1-213ENST00000561026 PPM1GO15355 546 aaPredicted RBP22.43■■□□□ 1.18
SNX1-213ENST00000561026 AKT1S1Q96B36 256 aa22.42■■□□□ 1.18
SNX1-213ENST00000561026 HSPA5P11021 654 aaKnown RBP22.41■■□□□ 1.18
SNX1-213ENST00000561026 SGIP1Q9BQI5 828 aa22.41■■□□□ 1.18
SNX1-213ENST00000561026 WASHC2AQ641Q2 1341 aa22.41■■□□□ 1.18
SNX1-213ENST00000561026 DOT1LQ8TEK3 1739 aa22.4■■□□□ 1.18
SNX1-213ENST00000561026 KCNQ4P56696 695 aa22.4■■□□□ 1.18
SNX1-213ENST00000561026 PCDH11XQ9BZA7 1347 aa22.4■■□□□ 1.18
SNX1-213ENST00000561026 PCDH11YQ9BZA8 1340 aa22.4■■□□□ 1.18
SNX1-213ENST00000561026 DCAF8L1A6NGE4 600 aa22.39■■□□□ 1.18
SNX1-213ENST00000561026 POLKQ9UBT6 870 aa22.38■■□□□ 1.17
SNX1-213ENST00000561026 CYP27B1O15528 508 aa22.37■■□□□ 1.17
SNX1-213ENST00000561026 NCAPD2Q15021 1401 aa22.36■■□□□ 1.17
SNX1-213ENST00000561026 FHDC1Q9C0D6 1143 aaPredicted RBP22.36■■□□□ 1.17
SNX1-213ENST00000561026 PANK3Q9H999 370 aa22.36■■□□□ 1.17
SNX1-213ENST00000561026 TFCP2L1Q9NZI6 479 aa22.36■■□□□ 1.17
SNX1-213ENST00000561026 CCNL1Q9UK58 526 aaPredicted RBP22.36■■□□□ 1.17
SNX1-213ENST00000561026 SLC16A10Q8TF71 515 aa22.35■■□□□ 1.17
SNX1-213ENST00000561026 EYA1Q99502 592 aa22.35■■□□□ 1.17
SNX1-213ENST00000561026 SYT17Q9BSW7 474 aa22.35■■□□□ 1.17
SNX1-213ENST00000561026 ANKRD26Q9UPS8 1709 aa22.34■■□□□ 1.17
SNX1-213ENST00000561026 PNPLA7Q6ZV29 1317 aa22.34■■□□□ 1.17
SNX1-213ENST00000561026 TNNT2P45379 298 aaPredicted RBP22.34■■□□□ 1.17
SNX1-213ENST00000561026 ARXQ96QS3 562 aa22.34■■□□□ 1.17
SNX1-213ENST00000561026 LY75O60449 1722 aa22.34■■□□□ 1.17
SNX1-213ENST00000561026 MAP2P11137 1827 aaKnown RBP22.33■■□□□ 1.17
SNX1-213ENST00000561026 YY1P25490 414 aa22.32■■□□□ 1.16
SNX1-213ENST00000561026 MPRIPQ6WCQ1 1025 aa22.32■■□□□ 1.16
SNX1-213ENST00000561026 SPG7Q9UQ90 795 aa22.32■■□□□ 1.16
SNX1-213ENST00000561026 UTRNP46939 3433 aa22.32■■□□□ 1.16
SNX1-213ENST00000561026 NKX1-1Q15270 411 aaPredicted RBP22.31■■□□□ 1.16
SNX1-213ENST00000561026 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.3■■□□□ 1.165e-7■■□□□ 12.3
SNX1-213ENST00000561026 EIF4A2Q14240 407 aaKnown RBP22.29■■□□□ 1.16
SNX1-213ENST00000561026 QSER1Q2KHR3 1735 aa22.29■■□□□ 1.16
SNX1-213ENST00000561026 PKD1L3Q7Z443 1732 aa22.28■■□□□ 1.16
SNX1-213ENST00000561026 HMGB2P26583 209 aaKnown RBP22.27■■□□□ 1.16
SNX1-213ENST00000561026 PALLDQ8WX93 1383 aa22.27■■□□□ 1.16
SNX1-213ENST00000561026 MAP3K5Q99683 1374 aa22.27■■□□□ 1.16
SNX1-213ENST00000561026 POLD1P28340 1107 aa22.26■■□□□ 1.15
SNX1-213ENST00000561026 PIGBQ92521 554 aa22.26■■□□□ 1.15
SNX1-213ENST00000561026 SMARCC1Q92922 1105 aaPredicted RBP22.25■■□□□ 1.15
SNX1-213ENST00000561026 COL23A1Q86Y22 540 aaPredicted RBP22.25■■□□□ 1.15
SNX1-213ENST00000561026 IFNL2Q8IZJ0 200 aa22.24■■□□□ 1.15
SNX1-213ENST00000561026 TUBGCP6Q96RT7 1819 aa22.23■■□□□ 1.15
SNX1-213ENST00000561026 PHKG2P15735 406 aa22.23■■□□□ 1.15
SNX1-213ENST00000561026 MORC1Q86VD1 984 aa22.23■■□□□ 1.15
SNX1-213ENST00000561026 TOGARAM1Q9Y4F4 1720 aa22.23■■□□□ 1.15
SNX1-213ENST00000561026 IGSF1Q8N6C5 1336 aa22.22■■□□□ 1.15
SNX1-213ENST00000561026 MSH5O43196 834 aa22.22■■□□□ 1.15
SNX1-213ENST00000561026 KNSTRNQ9Y448 316 aa22.22■■□□□ 1.15
SNX1-213ENST00000561026 PLEKHG2Q9H7P9 1386 aa22.21■■□□□ 1.15
SNX1-213ENST00000561026 ITGB4P16144 1822 aa22.21■■□□□ 1.15
SNX1-213ENST00000561026 COL24A1Q17RW2 1714 aa22.21■■□□□ 1.15
SNX1-213ENST00000561026 TMOD3Q9NYL9 352 aa22.2■■□□□ 1.14
SNX1-213ENST00000561026 FLAD1Q8NFF5 587 aa22.19■■□□□ 1.14
SNX1-213ENST00000561026 C5P01031 1676 aa22.18■■□□□ 1.14
SNX1-213ENST00000561026 KLHL34Q8N239 644 aa22.18■■□□□ 1.14
SNX1-213ENST00000561026 GOLGB1Q14789 3259 aaKnown RBP22.17■■□□□ 1.14
SNX1-213ENST00000561026 LOC102724428A0A0B4J2F2 783 aa22.17■■□□□ 1.14
SNX1-213ENST00000561026 SIK1P57059 783 aa22.17■■□□□ 1.14
SNX1-213ENST00000561026 ASAP1Q9ULH1 1129 aa22.17■■□□□ 1.14
SNX1-213ENST00000561026 KIF7Q2M1P5 1343 aa22.16■■□□□ 1.14
SNX1-213ENST00000561026 PLEKHO1Q53GL0 409 aaPredicted RBP22.15■■□□□ 1.14
SNX1-213ENST00000561026 AMER1Q5JTC6 1135 aaPredicted RBP22.15■■□□□ 1.14
SNX1-213ENST00000561026 AK7Q96M32 723 aa22.15■■□□□ 1.14
SNX1-213ENST00000561026 TAF1LQ8IZX4 1826 aa22.15■■□□□ 1.14
SNX1-213ENST00000561026 MSL1Q68DK7 614 aa22.14■■□□□ 1.14
SNX1-213ENST00000561026 GPR162Q16538 588 aa22.13■■□□□ 1.13
SNX1-213ENST00000561026 AMOTQ4VCS5 1084 aa22.13■■□□□ 1.13
SNX1-213ENST00000561026 AMIGO3Q86WK7 504 aa22.13■■□□□ 1.13
SNX1-213ENST00000561026 ATG3Q9NT62 314 aa22.13■■□□□ 1.13
SNX1-213ENST00000561026 C4BP0C0L5 1744 aa22.13■■□□□ 1.13
SNX1-213ENST00000561026 ERVV-2B6SEH9 535 aa22.12■■□□□ 1.13
SNX1-213ENST00000561026 HSP90AB1P08238 724 aaKnown RBP22.12■■□□□ 1.13
SNX1-213ENST00000561026 LINC00116Q8NCU8 138 aa22.12■■□□□ 1.13
SNX1-213ENST00000561026 NLGN2Q8NFZ4 835 aa22.12■■□□□ 1.13
SNX1-213ENST00000561026 DCAF5Q96JK2 942 aa22.12■■□□□ 1.13
SNX1-213ENST00000561026 AEBP1Q8IUX7 1158 aa22.12■■□□□ 1.13
SNX1-213ENST00000561026 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.11■■□□□ 1.13
SNX1-213ENST00000561026 IL13P35225 146 aa22.11■■□□□ 1.13
SNX1-213ENST00000561026 ATP6V1AP38606 617 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms