RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 KCNQ4P56696 695 aa14.13□□□□□ -0.15
LDLR-214ENST00000560628 MEGF6O75095 1541 aa14.13□□□□□ -0.15
LDLR-214ENST00000560628 CGNL1Q0VF96 1302 aa14.13□□□□□ -0.15
LDLR-214ENST00000560628 FLT4P35916 1363 aa14.12□□□□□ -0.15
LDLR-214ENST00000560628 RGPD3A6NKT7 1758 aaPredicted RBP14.12□□□□□ -0.15
LDLR-214ENST00000560628 RGPD2P0DJD1 1756 aa14.12□□□□□ -0.15
LDLR-214ENST00000560628 RGPD4Q7Z3J3 1758 aa14.12□□□□□ -0.15
LDLR-214ENST00000560628 TNNT2P45379 298 aaPredicted RBP14.12□□□□□ -0.15
LDLR-214ENST00000560628 SMG6Q86US8 1419 aaKnown RBP14.12□□□□□ -0.15
LDLR-214ENST00000560628 NHSQ6T4R5 1651 aa14.11□□□□□ -0.15
LDLR-214ENST00000560628 PANK3Q9H999 370 aa14.11□□□□□ -0.15
LDLR-214ENST00000560628 ZNF827Q17R98 1081 aa14.1□□□□□ -0.15
LDLR-214ENST00000560628 POLKQ9UBT6 870 aa14.1□□□□□ -0.15
LDLR-214ENST00000560628 MYOM1P52179 1685 aa14.1□□□□□ -0.15
LDLR-214ENST00000560628 PTGER2P43116 358 aa14.09□□□□□ -0.15
LDLR-214ENST00000560628 FAM208AQ9UK61 1670 aaKnown RBP14.09□□□□□ -0.15
LDLR-214ENST00000560628 KIF24Q5T7B8 1368 aa14.09□□□□□ -0.15
LDLR-214ENST00000560628 BTAF1O14981 1849 aa14.08□□□□□ -0.15
LDLR-214ENST00000560628 KIF20BQ96Q89 1820 aa14.08□□□□□ -0.15
LDLR-214ENST00000560628 SLC27A3Q5K4L6 730 aa14.08□□□□□ -0.16
LDLR-214ENST00000560628 WASHC2AQ641Q2 1341 aa14.08□□□□□ -0.16
LDLR-214ENST00000560628 CYP27B1O15528 508 aa14.07□□□□□ -0.16
LDLR-214ENST00000560628 AKT1S1Q96B36 256 aa14.07□□□□□ -0.16
LDLR-214ENST00000560628 EYA1Q99502 592 aa14.07□□□□□ -0.16
LDLR-214ENST00000560628 MTFR1LQ9H019 292 aa14.07□□□□□ -0.16
LDLR-214ENST00000560628 NSD2O96028 1365 aa14.07□□□□□ -0.16
LDLR-214ENST00000560628 PCDH11XQ9BZA7 1347 aa14.06□□□□□ -0.16
LDLR-214ENST00000560628 PCDH11YQ9BZA8 1340 aa14.06□□□□□ -0.16
LDLR-214ENST00000560628 CASZ1Q86V15 1759 aa14.05□□□□□ -0.16
LDLR-214ENST00000560628 MPRIPQ6WCQ1 1025 aa14.05□□□□□ -0.16
LDLR-214ENST00000560628 TFCP2L1Q9NZI6 479 aa14.05□□□□□ -0.16
LDLR-214ENST00000560628 CCNL1Q9UK58 526 aaPredicted RBP14.05□□□□□ -0.16
LDLR-214ENST00000560628 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
LDLR-214ENST00000560628 EIF4A2Q14240 407 aaKnown RBP14.04□□□□□ -0.16
LDLR-214ENST00000560628 MORC1Q86VD1 984 aa14.03□□□□□ -0.16
LDLR-214ENST00000560628 SGIP1Q9BQI5 828 aa14.03□□□□□ -0.16
LDLR-214ENST00000560628 FHDC1Q9C0D6 1143 aaPredicted RBP14.03□□□□□ -0.16
LDLR-214ENST00000560628 SPG7Q9UQ90 795 aa14.03□□□□□ -0.16
LDLR-214ENST00000560628 SHANK3Q9BYB0 1731 aa14.02□□□□□ -0.16
LDLR-214ENST00000560628 PNPLA7Q6ZV29 1317 aa14.02□□□□□ -0.17
LDLR-214ENST00000560628 ARXQ96QS3 562 aa14.02□□□□□ -0.17
LDLR-214ENST00000560628 SYT17Q9BSW7 474 aa14.02□□□□□ -0.17
LDLR-214ENST00000560628 DOT1LQ8TEK3 1739 aa14.01□□□□□ -0.17
LDLR-214ENST00000560628 MSH5O43196 834 aa14.01□□□□□ -0.17
LDLR-214ENST00000560628 PIGBQ92521 554 aa14.01□□□□□ -0.17
LDLR-214ENST00000560628 KNSTRNQ9Y448 316 aa14.01□□□□□ -0.17
LDLR-214ENST00000560628 MAP2P11137 1827 aaKnown RBP14.01□□□□□ -0.17
LDLR-214ENST00000560628 PAPPAQ13219 1627 aa14.01□□□□□ -0.17
LDLR-214ENST00000560628 NKX1-1Q15270 411 aaPredicted RBP14□□□□□ -0.17
LDLR-214ENST00000560628 SLC16A10Q8TF71 515 aa14□□□□□ -0.17
LDLR-214ENST00000560628 YY1P25490 414 aa13.99□□□□□ -0.17
LDLR-214ENST00000560628 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.99□□□□□ -0.17
LDLR-214ENST00000560628 NCAPD2Q15021 1401 aa13.98□□□□□ -0.17
LDLR-214ENST00000560628 PALLDQ8WX93 1383 aa13.98□□□□□ -0.17
LDLR-214ENST00000560628 KIF7Q2M1P5 1343 aa13.98□□□□□ -0.17
LDLR-214ENST00000560628 PHKG2P15735 406 aa13.98□□□□□ -0.17
LDLR-214ENST00000560628 COL23A1Q86Y22 540 aaPredicted RBP13.98□□□□□ -0.17
LDLR-214ENST00000560628 IFNL2Q8IZJ0 200 aa13.98□□□□□ -0.17
LDLR-214ENST00000560628 KLHL34Q8N239 644 aa13.98□□□□□ -0.17
LDLR-214ENST00000560628 SMARCC1Q92922 1105 aaPredicted RBP13.98□□□□□ -0.17
LDLR-214ENST00000560628 POLD1P28340 1107 aa13.97□□□□□ -0.17
LDLR-214ENST00000560628 TMOD3Q9NYL9 352 aa13.96□□□□□ -0.17
LDLR-214ENST00000560628 ASAP1Q9ULH1 1129 aa13.96□□□□□ -0.17
LDLR-214ENST00000560628 IGSF1Q8N6C5 1336 aa13.95□□□□□ -0.18
LDLR-214ENST00000560628 AMER1Q5JTC6 1135 aaPredicted RBP13.95□□□□□ -0.18
LDLR-214ENST00000560628 MSL1Q68DK7 614 aa13.95□□□□□ -0.18
LDLR-214ENST00000560628 SMIM5Q71RC9 77 aa13.95□□□□□ -0.18
LDLR-214ENST00000560628 AEBP1Q8IUX7 1158 aa13.95□□□□□ -0.18
LDLR-214ENST00000560628 LY75O60449 1722 aa13.95□□□□□ -0.18
LDLR-214ENST00000560628 ANKRD26Q9UPS8 1709 aa13.95□□□□□ -0.18
LDLR-214ENST00000560628 CNGB1Q14028 1251 aaPredicted RBP13.94□□□□□ -0.18
LDLR-214ENST00000560628 PLEKHO1Q53GL0 409 aaPredicted RBP13.94□□□□□ -0.18
LDLR-214ENST00000560628 LOC102724428A0A0B4J2F2 783 aa13.93□□□□□ -0.18
LDLR-214ENST00000560628 SIK1P57059 783 aa13.93□□□□□ -0.18
LDLR-214ENST00000560628 CC2D1BQ5T0F9 858 aaKnown RBP13.93□□□□□ -0.18
LDLR-214ENST00000560628 SULT6B1Q6IMI4 303 aa13.93□□□□□ -0.18
LDLR-214ENST00000560628 ZNF530Q6P9A1 599 aaPredicted RBP13.93□□□□□ -0.18
LDLR-214ENST00000560628 AK7Q96M32 723 aa13.93□□□□□ -0.18
LDLR-214ENST00000560628 ATG3Q9NT62 314 aa13.93□□□□□ -0.18
LDLR-214ENST00000560628 PKD1L3Q7Z443 1732 aa13.93□□□□□ -0.18
LDLR-214ENST00000560628 PER1O15534 1290 aaPredicted RBP13.92□□□□□ -0.18
LDLR-214ENST00000560628 PHF14O94880 888 aa13.92□□□□□ -0.18
LDLR-214ENST00000560628 IL13P35225 146 aa13.92□□□□□ -0.18
LDLR-214ENST00000560628 MTHFSP49914 203 aa13.92□□□□□ -0.18
LDLR-214ENST00000560628 AMIGO3Q86WK7 504 aa13.92□□□□□ -0.18
LDLR-214ENST00000560628 TOGARAM1Q9Y4F4 1720 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 HMGB2P26583 209 aaKnown RBP13.91□□□□□ -0.18
LDLR-214ENST00000560628 ATP6V1AP38606 617 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 ITPK1Q13572 414 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 GPR162Q16538 588 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 AMOTQ4VCS5 1084 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 PELP1Q8IZL8 1130 aaKnown RBP13.91□□□□□ -0.18
LDLR-214ENST00000560628 LINC00116Q8NCU8 138 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 FLAD1Q8NFF5 587 aa13.91□□□□□ -0.18
LDLR-214ENST00000560628 ITGB4P16144 1822 aa13.9□□□□□ -0.18
LDLR-214ENST00000560628 ERVV-2B6SEH9 535 aa13.9□□□□□ -0.18
LDLR-214ENST00000560628 HSP90AB1P08238 724 aaKnown RBP13.9□□□□□ -0.18
LDLR-214ENST00000560628 CABP4P57796 275 aa13.9□□□□□ -0.18
LDLR-214ENST00000560628 NLGN2Q8NFZ4 835 aa13.9□□□□□ -0.18
LDLR-214ENST00000560628 DCAF5Q96JK2 942 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms