RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-215ENST00000559774 ADAMTS8Q9UP79 889 aa11.54□□□□□ -0.56
LRRC28-215ENST00000559774 SPG7Q9UQ90 795 aa11.54□□□□□ -0.56
LRRC28-215ENST00000559774 OVOS2A0A0G2JMS6 1433 aa11.53□□□□□ -0.56
LRRC28-215ENST00000559774 NCBP3Q53F19 620 aaKnown RBP11.53□□□□□ -0.56
LRRC28-215ENST00000559774 AEBP1Q8IUX7 1158 aa11.53□□□□□ -0.56
LRRC28-215ENST00000559774 USHBP1Q8N6Y0 703 aa11.53□□□□□ -0.56
LRRC28-215ENST00000559774 ZCRB1Q8TBF4 217 aaKnown RBP11.53□□□□□ -0.56
LRRC28-215ENST00000559774 GLI3P10071 1580 aa11.53□□□□□ -0.56
LRRC28-215ENST00000559774 HMOX1P09601 288 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 PRKAR2BP31323 418 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 DDB1Q16531 1140 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 SEPT12Q8IYM1 358 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 NGEFQ8N5V2 710 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 RUNDC1Q96C34 613 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 PLEKHF1Q96S99 279 aa11.52□□□□□ -0.57
LRRC28-215ENST00000559774 GAS2L2Q8NHY3 880 aa11.51□□□□□ -0.57
LRRC28-215ENST00000559774 PCDH11XQ9BZA7 1347 aa11.51□□□□□ -0.57
LRRC28-215ENST00000559774 PCDH11YQ9BZA8 1340 aa11.51□□□□□ -0.57
LRRC28-215ENST00000559774 MEGF6O75095 1541 aa11.5□□□□□ -0.57
LRRC28-215ENST00000559774 THSD7AQ9UPZ6 1657 aa11.5□□□□□ -0.57
LRRC28-215ENST00000559774 HTATSF1O43719 755 aaKnown RBP11.5□□□□□ -0.57
LRRC28-215ENST00000559774 HSP90AB1P08238 724 aaKnown RBP11.5□□□□□ -0.57
LRRC28-215ENST00000559774 PDE3BQ13370 1112 aa11.5□□□□□ -0.57
LRRC28-215ENST00000559774 NKX1-1Q15270 411 aaPredicted RBP11.5□□□□□ -0.57
LRRC28-215ENST00000559774 MAPK8IP3Q9UPT6 1336 aa11.5□□□□□ -0.57
LRRC28-215ENST00000559774 BCL9O00512 1426 aa11.5□□□□□ -0.57
LRRC28-215ENST00000559774 TNS2Q63HR2 1409 aa11.5□□□□□ -0.57
LRRC28-215ENST00000559774 IFNL2Q8IZJ0 200 aa11.49□□□□□ -0.57
LRRC28-215ENST00000559774 PARP4Q9UKK3 1724 aaKnown RBP11.49□□□□□ -0.57
LRRC28-215ENST00000559774 A0A0G2JS52 829 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 MYT1Q01538 1121 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 AKAP4Q5JQC9 854 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 C1orf141Q5JVX7 400 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 KRT27Q7Z3Y8 459 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 FAM9BQ8IZU0 186 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 PHACTR3Q96KR7 559 aa11.48□□□□□ -0.57
LRRC28-215ENST00000559774 PHKG2P15735 406 aa11.47□□□□□ -0.57
LRRC28-215ENST00000559774 NFE2L2Q16236 605 aa11.47□□□□□ -0.57
LRRC28-215ENST00000559774 MTHFSDQ2M296 383 aaKnown RBP11.47□□□□□ -0.57
LRRC28-215ENST00000559774 ZNF530Q6P9A1 599 aaPredicted RBP11.47□□□□□ -0.57
LRRC28-215ENST00000559774 DCAF5Q96JK2 942 aa11.47□□□□□ -0.57
LRRC28-215ENST00000559774 RGPD2P0DJD1 1756 aa11.46□□□□□ -0.57
LRRC28-215ENST00000559774 RGS12O14924 1447 aa11.46□□□□□ -0.57
LRRC28-215ENST00000559774 GNAT3A8MTJ3 354 aa11.46□□□□□ -0.57
LRRC28-215ENST00000559774 CYP27B1O15528 508 aa11.46□□□□□ -0.57
LRRC28-215ENST00000559774 LMOD3Q0VAK6 560 aa11.46□□□□□ -0.57
LRRC28-215ENST00000559774 FAM196AQ6ZSG2 479 aa11.46□□□□□ -0.57
LRRC28-215ENST00000559774 PKD1L3Q7Z443 1732 aa11.46□□□□□ -0.58
LRRC28-215ENST00000559774 WNK3Q9BYP7 1800 aa11.45□□□□□ -0.58
LRRC28-215ENST00000559774 TMPOP42166 694 aaKnown RBP11.45□□□□□ -0.58
LRRC28-215ENST00000559774 CCDC27Q2M243 656 aa11.45□□□□□ -0.58
LRRC28-215ENST00000559774 MARCH10Q8NA82 808 aaPredicted RBP11.45□□□□□ -0.58
LRRC28-215ENST00000559774 DDX54Q8TDD1 881 aaKnown RBP11.45□□□□□ -0.58
LRRC28-215ENST00000559774 MAP3K5Q99683 1374 aa11.44□□□□□ -0.58
LRRC28-215ENST00000559774 ERVV-2B6SEH9 535 aa11.44□□□□□ -0.58
LRRC28-215ENST00000559774 LRRC37A3O60309 1634 aa11.44□□□□□ -0.58
LRRC28-215ENST00000559774 APAF1O14727 1248 aa11.43□□□□□ -0.58
LRRC28-215ENST00000559774 RIPK4P57078 832 aa11.43□□□□□ -0.58
LRRC28-215ENST00000559774 CCDC146Q8IYE0 955 aa11.43□□□□□ -0.58
LRRC28-215ENST00000559774 RTF1Q92541 710 aaKnown RBP11.43□□□□□ -0.58
LRRC28-215ENST00000559774 CEMIPQ8WUJ3 1361 aa11.42□□□□□ -0.58
LRRC28-215ENST00000559774 CALD1Q05682 793 aaKnown RBP11.42□□□□□ -0.58
LRRC28-215ENST00000559774 RNMTO43148 476 aaKnown RBP11.41□□□□□ -0.58
LRRC28-215ENST00000559774 BABAM1Q9NWV8 329 aa11.41□□□□□ -0.58
LRRC28-215ENST00000559774 CCDC125Q86Z20 511 aa11.4□□□□□ -0.58
LRRC28-215ENST00000559774 IL17REQ8NFR9 667 aa11.4□□□□□ -0.58
LRRC28-215ENST00000559774 HMGB2P26583 209 aaKnown RBP11.39□□□□□ -0.59
LRRC28-215ENST00000559774 MPRIPQ6WCQ1 1025 aa11.39□□□□□ -0.59
LRRC28-215ENST00000559774 BCL11BQ9C0K0 894 aaPredicted RBP11.39□□□□□ -0.59
LRRC28-215ENST00000559774 SLC52A2Q9HAB3 445 aa11.39□□□□□ -0.59
LRRC28-215ENST00000559774 TRIM35Q9UPQ4 493 aa11.39□□□□□ -0.59
LRRC28-215ENST00000559774 SHANK3Q9BYB0 1731 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 KDM6AO15550 1401 aaPredicted RBP11.38□□□□□ -0.59
LRRC28-215ENST00000559774 CABP4P57796 275 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 TEFQ10587 303 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 WDR63Q8IWG1 891 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 WWC1Q8IX03 1113 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 LGR6Q9HBX8 967 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 ADAMTS7Q9UKP4 1686 aa11.38□□□□□ -0.59
LRRC28-215ENST00000559774 IL16Q14005 1332 aa11.37□□□□□ -0.59
LRRC28-215ENST00000559774 TAF7Q15545 349 aaPredicted RBP11.37□□□□□ -0.59
LRRC28-215ENST00000559774 NEUROD2Q15784 382 aa11.37□□□□□ -0.59
LRRC28-215ENST00000559774 TMOD3Q9NYL9 352 aa11.37□□□□□ -0.59
LRRC28-215ENST00000559774 RRP7AQ9Y3A4 280 aaKnown RBP11.37□□□□□ -0.59
LRRC28-215ENST00000559774 MRC1P22897 1456 aa11.37□□□□□ -0.59
LRRC28-215ENST00000559774 PRIM1P49642 420 aaKnown RBP11.36□□□□□ -0.59
LRRC28-215ENST00000559774 MCM10Q7L590 875 aa11.36□□□□□ -0.59
LRRC28-215ENST00000559774 NFATC2IPQ8NCF5 419 aa11.36□□□□□ -0.59
LRRC28-215ENST00000559774 SMARCC1Q92922 1105 aaPredicted RBP11.36□□□□□ -0.59
LRRC28-215ENST00000559774 ZNF521Q96K83 1311 aa11.35□□□□□ -0.59
LRRC28-215ENST00000559774 GNAI1P63096 354 aa11.35□□□□□ -0.59
LRRC28-215ENST00000559774 PIGBQ92521 554 aa11.35□□□□□ -0.59
LRRC28-215ENST00000559774 CFAP44Q96MT7 982 aa11.35□□□□□ -0.59
LRRC28-215ENST00000559774 IFT57Q9NWB7 429 aa11.35□□□□□ -0.59
LRRC28-215ENST00000559774 BRWD3Q6RI45 1802 aa11.35□□□□□ -0.59
LRRC28-215ENST00000559774 CHL1O00533 1208 aa11.34□□□□□ -0.59
LRRC28-215ENST00000559774 PLSCR1O15162 318 aa11.34□□□□□ -0.59
LRRC28-215ENST00000559774 DCTN1Q14203 1278 aa11.34□□□□□ -0.59
LRRC28-215ENST00000559774 FAM182BQ5T319 152 aa11.34□□□□□ -0.59
LRRC28-215ENST00000559774 SYTL4Q96C24 671 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms