RNA–Protein interactions for RNA: ENST00000559399.5

LRRC28-213, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-213ENST00000559399 SLC27A3Q5K4L6 730 aa20.73■□□□□ 0.91
LRRC28-213ENST00000559399 USHBP1Q8N6Y0 703 aa20.73■□□□□ 0.91
LRRC28-213ENST00000559399 MTFR1LQ9H019 292 aa20.73■□□□□ 0.91
LRRC28-213ENST00000559399 LRRC4BQ9NT99 713 aa20.73■□□□□ 0.91
LRRC28-213ENST00000559399 ATF5Q9Y2D1 282 aaPredicted RBP20.73■□□□□ 0.91
LRRC28-213ENST00000559399 PAPPAQ13219 1627 aa20.72■□□□□ 0.91
LRRC28-213ENST00000559399 DCAF8L1A6NGE4 600 aa20.71■□□□□ 0.91
LRRC28-213ENST00000559399 ZNF827Q17R98 1081 aa20.71■□□□□ 0.91
LRRC28-213ENST00000559399 TATP17735 454 aaPredicted RBP20.7■□□□□ 0.9
LRRC28-213ENST00000559399 NSD2O96028 1365 aa20.7■□□□□ 0.9
LRRC28-213ENST00000559399 BTAF1O14981 1849 aa20.69■□□□□ 0.9
LRRC28-213ENST00000559399 EMILIN1Q9Y6C2 1016 aa20.69■□□□□ 0.9
LRRC28-213ENST00000559399 MYOM1P52179 1685 aa20.69■□□□□ 0.9
LRRC28-213ENST00000559399 AKT1S1Q96B36 256 aa20.67■□□□□ 0.9
LRRC28-213ENST00000559399 POLR3GLQ9BT43 218 aa20.67■□□□□ 0.9
LRRC28-213ENST00000559399 PCDH11XQ9BZA7 1347 aa20.67■□□□□ 0.9
LRRC28-213ENST00000559399 PCDH11YQ9BZA8 1340 aa20.67■□□□□ 0.9
LRRC28-213ENST00000559399 KIF20BQ96Q89 1820 aa20.67■□□□□ 0.9
LRRC28-213ENST00000559399 PPM1GO15355 546 aaPredicted RBP20.66■□□□□ 0.9
LRRC28-213ENST00000559399 SGIP1Q9BQI5 828 aa20.66■□□□□ 0.9
LRRC28-213ENST00000559399 EIF4G2P78344 907 aaKnown RBP eCLIP20.65■□□□□ 0.9
LRRC28-213ENST00000559399 KCNQ4P56696 695 aa20.64■□□□□ 0.89
LRRC28-213ENST00000559399 CCER1Q8TC90 406 aaPredicted RBP20.64■□□□□ 0.89
LRRC28-213ENST00000559399 FHDC1Q9C0D6 1143 aaPredicted RBP20.64■□□□□ 0.89
LRRC28-213ENST00000559399 YY1P25490 414 aa20.63■□□□□ 0.89
LRRC28-213ENST00000559399 CCNL1Q9UK58 526 aaPredicted RBP20.63■□□□□ 0.89
LRRC28-213ENST00000559399 DOT1LQ8TEK3 1739 aa20.63■□□□□ 0.89
LRRC28-213ENST00000559399 SHANK3Q9BYB0 1731 aa20.62■□□□□ 0.89
LRRC28-213ENST00000559399 WASHC2AQ641Q2 1341 aa20.62■□□□□ 0.89
LRRC28-213ENST00000559399 ARXQ96QS3 562 aa20.62■□□□□ 0.89
LRRC28-213ENST00000559399 SYT17Q9BSW7 474 aa20.62■□□□□ 0.89
LRRC28-213ENST00000559399 TFCP2L1Q9NZI6 479 aa20.62■□□□□ 0.89
LRRC28-213ENST00000559399 NCAPD2Q15021 1401 aa20.61■□□□□ 0.89
LRRC28-213ENST00000559399 PNPLA7Q6ZV29 1317 aa20.61■□□□□ 0.89
LRRC28-213ENST00000559399 HSPA5P11021 654 aaKnown RBP20.61■□□□□ 0.89
LRRC28-213ENST00000559399 SLC16A10Q8TF71 515 aa20.61■□□□□ 0.89
LRRC28-213ENST00000559399 RGPD2P0DJD1 1756 aa20.61■□□□□ 0.89
LRRC28-213ENST00000559399 CYP27B1O15528 508 aa20.6■□□□□ 0.89
LRRC28-213ENST00000559399 POLKQ9UBT6 870 aa20.59■□□□□ 0.89
LRRC28-213ENST00000559399 MAP3K5Q99683 1374 aa20.58■□□□□ 0.88
LRRC28-213ENST00000559399 POLD1P28340 1107 aa20.57■□□□□ 0.88
LRRC28-213ENST00000559399 EYA1Q99502 592 aa20.57■□□□□ 0.88
LRRC28-213ENST00000559399 SPG7Q9UQ90 795 aa20.57■□□□□ 0.88
LRRC28-213ENST00000559399 PALLDQ8WX93 1383 aa20.57■□□□□ 0.88
LRRC28-213ENST00000559399 TNNT2P45379 298 aaPredicted RBP20.56■□□□□ 0.88
LRRC28-213ENST00000559399 MPRIPQ6WCQ1 1025 aa20.56■□□□□ 0.88
LRRC28-213ENST00000559399 PANK3Q9H999 370 aa20.56■□□□□ 0.88
LRRC28-213ENST00000559399 HMGB2P26583 209 aaKnown RBP20.55■□□□□ 0.88
LRRC28-213ENST00000559399 ANKRD26Q9UPS8 1709 aa20.55■□□□□ 0.88
LRRC28-213ENST00000559399 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.54■□□□□ 0.881e-7■■■□□ 18.9
LRRC28-213ENST00000559399 LY75O60449 1722 aa20.53■□□□□ 0.88
LRRC28-213ENST00000559399 EIF4A2Q14240 407 aaKnown RBP20.53■□□□□ 0.88
LRRC28-213ENST00000559399 NKX1-1Q15270 411 aaPredicted RBP20.53■□□□□ 0.88
LRRC28-213ENST00000559399 SMARCC1Q92922 1105 aaPredicted RBP20.52■□□□□ 0.88
LRRC28-213ENST00000559399 MSH5O43196 834 aa20.51■□□□□ 0.87
LRRC28-213ENST00000559399 KLHL34Q8N239 644 aa20.51■□□□□ 0.87
LRRC28-213ENST00000559399 QSER1Q2KHR3 1735 aa20.5■□□□□ 0.87
LRRC28-213ENST00000559399 PKD1L3Q7Z443 1732 aa20.5■□□□□ 0.87
LRRC28-213ENST00000559399 PLEKHG2Q9H7P9 1386 aa20.5■□□□□ 0.87
LRRC28-213ENST00000559399 COL23A1Q86Y22 540 aaPredicted RBP20.5■□□□□ 0.87
LRRC28-213ENST00000559399 PIGBQ92521 554 aa20.5■□□□□ 0.87
LRRC28-213ENST00000559399 PHKG2P15735 406 aa20.48■□□□□ 0.87
LRRC28-213ENST00000559399 IFNL2Q8IZJ0 200 aa20.48■□□□□ 0.87
LRRC28-213ENST00000559399 IGSF1Q8N6C5 1336 aa20.48■□□□□ 0.87
LRRC28-213ENST00000559399 FLAD1Q8NFF5 587 aa20.47■□□□□ 0.87
LRRC28-213ENST00000559399 TMOD3Q9NYL9 352 aa20.47■□□□□ 0.87
LRRC28-213ENST00000559399 KAT6BQ8WYB5 2073 aa20.47■□□□□ 0.87
LRRC28-213ENST00000559399 TOGARAM1Q9Y4F4 1720 aa20.47■□□□□ 0.87
LRRC28-213ENST00000559399 MORC1Q86VD1 984 aa20.46■□□□□ 0.87
LRRC28-213ENST00000559399 MSL1Q68DK7 614 aa20.45■□□□□ 0.86
LRRC28-213ENST00000559399 AK7Q96M32 723 aa20.45■□□□□ 0.86
LRRC28-213ENST00000559399 KNSTRNQ9Y448 316 aa20.45■□□□□ 0.86
LRRC28-213ENST00000559399 LOC102724428A0A0B4J2F2 783 aa20.44■□□□□ 0.86
LRRC28-213ENST00000559399 SIK1P57059 783 aa20.44■□□□□ 0.86
LRRC28-213ENST00000559399 GPR162Q16538 588 aa20.44■□□□□ 0.86
LRRC28-213ENST00000559399 C5P01031 1676 aa20.42■□□□□ 0.86
LRRC28-213ENST00000559399 TUBGCP6Q96RT7 1819 aa20.42■□□□□ 0.86
LRRC28-213ENST00000559399 NLGN2Q8NFZ4 835 aa20.42■□□□□ 0.86
LRRC28-213ENST00000559399 ASAP1Q9ULH1 1129 aa20.42■□□□□ 0.86
LRRC28-213ENST00000559399 UTRNP46939 3433 aa20.41■□□□□ 0.86
LRRC28-213ENST00000559399 COL24A1Q17RW2 1714 aa20.41■□□□□ 0.86
LRRC28-213ENST00000559399 PHF14O94880 888 aa20.4■□□□□ 0.86
LRRC28-213ENST00000559399 HSP90AB1P08238 724 aaKnown RBP20.4■□□□□ 0.86
LRRC28-213ENST00000559399 KIF7Q2M1P5 1343 aa20.4■□□□□ 0.86
LRRC28-213ENST00000559399 PLEKHO1Q53GL0 409 aaPredicted RBP20.4■□□□□ 0.86
LRRC28-213ENST00000559399 AMIGO3Q86WK7 504 aa20.4■□□□□ 0.86
LRRC28-213ENST00000559399 PELP1Q8IZL8 1130 aaKnown RBP20.4■□□□□ 0.86
LRRC28-213ENST00000559399 LINC00116Q8NCU8 138 aa20.4■□□□□ 0.86
LRRC28-213ENST00000559399 C4BP0C0L5 1744 aa20.39■□□□□ 0.86
LRRC28-213ENST00000559399 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.39■□□□□ 0.85
LRRC28-213ENST00000559399 AMOTQ4VCS5 1084 aa20.39■□□□□ 0.85
LRRC28-213ENST00000559399 ZNF784Q8NCA9 323 aaPredicted RBP20.39■□□□□ 0.85
LRRC28-213ENST00000559399 DCAF5Q96JK2 942 aa20.39■□□□□ 0.85
LRRC28-213ENST00000559399 ATG3Q9NT62 314 aa20.39■□□□□ 0.85
LRRC28-213ENST00000559399 MAP2P11137 1827 aaKnown RBP20.39■□□□□ 0.85
LRRC28-213ENST00000559399 ERVV-2B6SEH9 535 aa20.38■□□□□ 0.85
LRRC28-213ENST00000559399 SSFA2P28290 1259 aa20.38■□□□□ 0.85
LRRC28-213ENST00000559399 ITPK1Q13572 414 aa20.38■□□□□ 0.85
LRRC28-213ENST00000559399 AMER1Q5JTC6 1135 aaPredicted RBP20.38■□□□□ 0.85
LRRC28-213ENST00000559399 ZNF530Q6P9A1 599 aaPredicted RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms