RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 NBPF6Q5VWK0 638 aa15.06■□□□□ 0
SPG11-216ENST00000559347 PTF1AQ7RTS3 328 aa15.06■□□□□ 0
SPG11-216ENST00000559347 NBPF4Q96M43 638 aa15.06■□□□□ 0
SPG11-216ENST00000559347 PAPPAQ13219 1627 aa15.06■□□□□ 0
SPG11-216ENST00000559347 USHBP1Q8N6Y0 703 aa15.05■□□□□ -0
SPG11-216ENST00000559347 BCL11BQ9C0K0 894 aaPredicted RBP15.05■□□□□ -0
SPG11-216ENST00000559347 LY75O60449 1722 aa15.05■□□□□ -0
SPG11-216ENST00000559347 WASHC2AQ641Q2 1341 aa15.04■□□□□ -0
SPG11-216ENST00000559347 ITGB4P16144 1822 aa15.03■□□□□ -0
SPG11-216ENST00000559347 CASZ1Q86V15 1759 aa15.03■□□□□ -0
SPG11-216ENST00000559347 POLKQ9UBT6 870 aa15.03■□□□□ -0
SPG11-216ENST00000559347 PSDA5PKW4 1024 aaPredicted RBP15.02■□□□□ -0
SPG11-216ENST00000559347 PLSCR1O15162 318 aa15.02■□□□□ -0
SPG11-216ENST00000559347 PPM1GO15355 546 aaPredicted RBP15.02■□□□□ -0
SPG11-216ENST00000559347 TNNT2P45379 298 aaPredicted RBP15.02■□□□□ -0
SPG11-216ENST00000559347 KNSTRNQ9Y448 316 aa15.02■□□□□ -0
SPG11-216ENST00000559347 KCNQ2O43526 872 aa15.01□□□□□ -0.01
SPG11-216ENST00000559347 RAPGEF4Q8WZA2 1011 aa15.01□□□□□ -0.01
SPG11-216ENST00000559347 ACSBG1Q96GR2 724 aa15.01□□□□□ -0.01
SPG11-216ENST00000559347 AMER1Q5JTC6 1135 aaPredicted RBP15□□□□□ -0.01
SPG11-216ENST00000559347 ZCRB1Q8TBF4 217 aaKnown RBP15□□□□□ -0.01
SPG11-216ENST00000559347 TUBGCP6Q96RT7 1819 aa15□□□□□ -0.01
SPG11-216ENST00000559347 QSER1Q2KHR3 1735 aa15□□□□□ -0.01
SPG11-216ENST00000559347 TATP17735 454 aaPredicted RBP14.99□□□□□ -0.01
SPG11-216ENST00000559347 R3HDM1Q15032 1099 aaKnown RBP14.99□□□□□ -0.01
SPG11-216ENST00000559347 DDX54Q8TDD1 881 aaKnown RBP14.99□□□□□ -0.01
SPG11-216ENST00000559347 PCDH11XQ9BZA7 1347 aa14.98□□□□□ -0.01
SPG11-216ENST00000559347 PCDH11YQ9BZA8 1340 aa14.98□□□□□ -0.01
SPG11-216ENST00000559347 EIF4A2Q14240 407 aaKnown RBP14.98□□□□□ -0.01
SPG11-216ENST00000559347 MORC1Q86VD1 984 aa14.98□□□□□ -0.01
SPG11-216ENST00000559347 PLEKHG2Q9H7P9 1386 aa14.98□□□□□ -0.01
SPG11-216ENST00000559347 PER1O15534 1290 aaPredicted RBP14.97□□□□□ -0.01
SPG11-216ENST00000559347 VIRMAQ69YN4 1812 aaKnown RBP14.96□□□□□ -0.01
SPG11-216ENST00000559347 TAF1LQ8IZX4 1826 aa14.96□□□□□ -0.01
SPG11-216ENST00000559347 IGSF1Q8N6C5 1336 aa14.96□□□□□ -0.01
SPG11-216ENST00000559347 PROM2Q8N271 834 aa14.96□□□□□ -0.01
SPG11-216ENST00000559347 EYA1Q99502 592 aa14.96□□□□□ -0.01
SPG11-216ENST00000559347 ANO8Q9HCE9 1232 aaPredicted RBP14.96□□□□□ -0.01
SPG11-216ENST00000559347 C5P01031 1676 aa14.96□□□□□ -0.01
SPG11-216ENST00000559347 NPC1L1Q9UHC9 1359 aa14.96□□□□□ -0.02
SPG11-216ENST00000559347 TXNRD1Q16881 649 aa14.95□□□□□ -0.02
SPG11-216ENST00000559347 NBPF14Q5TI25 921 aa14.94□□□□□ -0.02
SPG11-216ENST00000559347 COL3A1P02461 1466 aaPredicted RBP14.94□□□□□ -0.02
SPG11-216ENST00000559347 CYP27B1O15528 508 aa14.93□□□□□ -0.02
SPG11-216ENST00000559347 SYTL4Q96C24 671 aaPredicted RBP14.92□□□□□ -0.02
SPG11-216ENST00000559347 SCN11AQ9UI33 1791 aa14.91□□□□□ -0.02
SPG11-216ENST00000559347 KDRP35968 1356 aa14.91□□□□□ -0.02
SPG11-216ENST00000559347 CC2D1BQ5T0F9 858 aaKnown RBP14.91□□□□□ -0.02
SPG11-216ENST00000559347 PRIM1P49642 420 aaKnown RBP14.9□□□□□ -0.02
SPG11-216ENST00000559347 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.9□□□□□ -0.02
SPG11-216ENST00000559347 SPG7Q9UQ90 795 aa14.9□□□□□ -0.02
SPG11-216ENST00000559347 COL24A1Q17RW2 1714 aa14.89□□□□□ -0.03
SPG11-216ENST00000559347 LRRC4BQ9NT99 713 aa14.88□□□□□ -0.03
SPG11-216ENST00000559347 C4BP0C0L5 1744 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 IL13P35225 146 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 MTHFSP49914 203 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 NKX1-1Q15270 411 aaPredicted RBP14.87□□□□□ -0.03
SPG11-216ENST00000559347 SLC15A2Q16348 729 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 AEBP1Q8IUX7 1158 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 STK32BQ9NY57 414 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 ZNF831Q5JPB2 1677 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 ADAMTS7Q9UKP4 1686 aa14.87□□□□□ -0.03
SPG11-216ENST00000559347 PHKG2P15735 406 aa14.86□□□□□ -0.03
SPG11-216ENST00000559347 SLC27A3Q5K4L6 730 aa14.86□□□□□ -0.03
SPG11-216ENST00000559347 UBR3Q6ZT12 1888 aa14.86□□□□□ -0.03
SPG11-216ENST00000559347 COL5A3P25940 1745 aaPredicted RBP14.86□□□□□ -0.03
SPG11-216ENST00000559347 KDM6AO15550 1401 aaPredicted RBP14.85□□□□□ -0.03
SPG11-216ENST00000559347 ZNF827Q17R98 1081 aa14.85□□□□□ -0.03
SPG11-216ENST00000559347 IFNL2Q8IZJ0 200 aa14.85□□□□□ -0.03
SPG11-216ENST00000559347 PALLDQ8WX93 1383 aa14.85□□□□□ -0.03
SPG11-216ENST00000559347 CICQ96RK0 1608 aaPredicted RBP14.84□□□□□ -0.03
SPG11-216ENST00000559347 PDGFDQ9GZP0 370 aaPredicted RBP14.84□□□□□ -0.03
SPG11-216ENST00000559347 CNGB1Q14028 1251 aaPredicted RBP14.83□□□□□ -0.04
SPG11-216ENST00000559347 SULT6B1Q6IMI4 303 aa14.83□□□□□ -0.04
SPG11-216ENST00000559347 MPRIPQ6WCQ1 1025 aa14.83□□□□□ -0.04
SPG11-216ENST00000559347 MRC1P22897 1456 aa14.82□□□□□ -0.04
SPG11-216ENST00000559347 KCNQ4P56696 695 aa14.82□□□□□ -0.04
SPG11-216ENST00000559347 AKT1S1Q96B36 256 aa14.82□□□□□ -0.04
SPG11-216ENST00000559347 CCNL1Q9UK58 526 aaPredicted RBP14.82□□□□□ -0.04
SPG11-216ENST00000559347 DIAPH1O60610 1272 aaKnown RBP14.81□□□□□ -0.04
SPG11-216ENST00000559347 AMOTQ4VCS5 1084 aa14.81□□□□□ -0.04
SPG11-216ENST00000559347 PLEKHO1Q53GL0 409 aaPredicted RBP14.81□□□□□ -0.04
SPG11-216ENST00000559347 ZNF530Q6P9A1 599 aaPredicted RBP14.81□□□□□ -0.04
SPG11-216ENST00000559347 SPON1Q9HCB6 807 aa14.81□□□□□ -0.04
SPG11-216ENST00000559347 SIPA1L3O60292 1781 aaPredicted RBP14.8□□□□□ -0.04
SPG11-216ENST00000559347 CNKSR2Q8WXI2 1034 aa14.8□□□□□ -0.04
SPG11-216ENST00000559347 PIGBQ92521 554 aa14.8□□□□□ -0.04
SPG11-216ENST00000559347 TMOD3Q9NYL9 352 aa14.8□□□□□ -0.04
SPG11-216ENST00000559347 TJP1Q07157 1748 aa14.8□□□□□ -0.04
SPG11-216ENST00000559347 PNPLA7Q6ZV29 1317 aa14.79□□□□□ -0.04
SPG11-216ENST00000559347 DCAF5Q96JK2 942 aa14.79□□□□□ -0.04
SPG11-216ENST00000559347 UBR2Q8IWV8 1755 aa14.78□□□□□ -0.04
SPG11-216ENST00000559347 ZBTB7AO95365 584 aa14.78□□□□□ -0.04
SPG11-216ENST00000559347 HSP90AB1P08238 724 aaKnown RBP14.78□□□□□ -0.04
SPG11-216ENST00000559347 HMOX1P09601 288 aa14.78□□□□□ -0.04
SPG11-216ENST00000559347 SMARCC1Q92922 1105 aaPredicted RBP14.78□□□□□ -0.04
SPG11-216ENST00000559347 C1orf141Q5JVX7 400 aa14.77□□□□□ -0.05
SPG11-216ENST00000559347 MTFR1LQ9H019 292 aa14.77□□□□□ -0.05
SPG11-216ENST00000559347 C4AP0C0L4 1744 aa14.77□□□□□ -0.05
SPG11-216ENST00000559347 ERVV-2B6SEH9 535 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms