RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 G3BP1Q13283 466 aaKnown RBP eCLIP8.48□□□□□ -1.05
USP3-210ENST00000559192 TMX3Q96JJ7 454 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 PDRG1Q9NUG6 133 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 CCDC73Q6ZRK6 1079 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 FERMT3Q86UX7 667 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 TXNDC2Q86VQ3 553 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 AEBP1Q8IUX7 1158 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 CCDC112Q8NEF3 446 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 FSD1Q9BTV5 496 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 CYP46A1Q9Y6A2 500 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 CLSTN1O94985 981 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 AIMP1Q12904 312 aaKnown RBP8.48□□□□□ -1.05
USP3-210ENST00000559192 GAS2L3Q86XJ1 694 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 MRPL50Q8N5N7 158 aaKnown RBP8.48□□□□□ -1.05
USP3-210ENST00000559192 ANTXR1Q9H6X2 564 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 ZKSCAN5Q9Y2L8 839 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 ATAD2Q6PL18 1390 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 ERICH4A6NGS2 130 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 SMC2O95347 1197 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 RBM25P49756 843 aaKnown RBP8.48□□□□□ -1.05
USP3-210ENST00000559192 LARP1BQ659C4 914 aaKnown RBP8.48□□□□□ -1.05
USP3-210ENST00000559192 TEFQ10587 303 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 STK11IPQ8N1F8 1099 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 TSPYL6Q8N831 410 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 NME9Q86XW9 330 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 NUP62CLQ9H1M0 184 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 HDAC5Q9UQL6 1122 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 HCLS1P14317 486 aaPredicted RBP8.47□□□□□ -1.05
USP3-210ENST00000559192 FMNL2Q96PY5 1086 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 PSMA5P28066 241 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 WAPLQ7Z5K2 1190 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 MNS1Q8NEH6 495 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 IL16Q14005 1332 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 MCM5P33992 734 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 HSP90AB4PQ58FF6 505 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 CCDC191Q8NCU4 936 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 CNPY2Q9Y2B0 182 aa8.47□□□□□ -1.05
USP3-210ENST00000559192 USP19O94966 1318 aa8.46□□□□□ -1.05
USP3-210ENST00000559192 ZNF521Q96K83 1311 aa8.46□□□□□ -1.05
USP3-210ENST00000559192 FSD2A1L4K1 749 aa8.46□□□□□ -1.05
USP3-210ENST00000559192 USP48Q86UV5 1035 aa8.46□□□□□ -1.05
USP3-210ENST00000559192 SPATA32Q96LK8 384 aa8.46□□□□□ -1.05
USP3-210ENST00000559192 RTEL1-TNFRSF6BF6WH68 1400 aa8.46□□□□□ -1.05
USP3-210ENST00000559192 KRT85P78386 507 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 TRMT2AQ8IZ69 625 aaKnown RBP8.46□□□□□ -1.06
USP3-210ENST00000559192 C16orf45Q96MC5 204 aaPredicted RBP8.46□□□□□ -1.06
USP3-210ENST00000559192 ARGLU1Q9NWB6 273 aaPredicted RBP8.46□□□□□ -1.06
USP3-210ENST00000559192 CKAP2LQ8IYA6 745 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 PLCD4Q9BRC7 762 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 TTC12Q9H892 705 aaPredicted RBP8.46□□□□□ -1.06
USP3-210ENST00000559192 NSD2O96028 1365 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 C1orf141Q5JVX7 400 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 GIMAP6Q6P9H5 292 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 CLASRPQ8N2M8 674 aaKnown RBP8.46□□□□□ -1.06
USP3-210ENST00000559192 C8orf58Q8NAV2 365 aa8.46□□□□□ -1.06
USP3-210ENST00000559192 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.46□□□□□ -1.06
USP3-210ENST00000559192 RPGRIP1LQ68CZ1 1315 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 PRPF40BQ6NWY9 871 aaKnown RBP8.45□□□□□ -1.06
USP3-210ENST00000559192 DNAJC2Q99543 621 aaKnown RBP8.45□□□□□ -1.06
USP3-210ENST00000559192 C14orf93Q9H972 538 aaKnown RBP8.45□□□□□ -1.06
USP3-210ENST00000559192 MAST1Q9Y2H9 1570 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 SRGAP3O43295 1099 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 CSB-PGBD3P0DP91 1061 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 NOLC1Q14978 699 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP3-210ENST00000559192 MAP3K11Q16584 847 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 PLEKHM2Q8IWE5 1019 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 OTUD7AQ8TE49 926 aaPredicted RBP8.45□□□□□ -1.06
USP3-210ENST00000559192 CHMP4AQ9BY43 222 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 SIL1Q9H173 461 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 MEIS3Q99687 375 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 SDF4Q9BRK5 362 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 CCDC70Q6NSX1 233 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 SRCIN1Q9C0H9 1055 aa8.45□□□□□ -1.06
USP3-210ENST00000559192 PDILTQ8N807 584 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 USP26Q9BXU7 913 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 TOMM22Q9NS69 142 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 SPG7Q9UQ90 795 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 FILIP1Q7Z7B0 1213 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 C17orf53Q8N3J3 647 aaPredicted RBP8.44□□□□□ -1.06
USP3-210ENST00000559192 NOL7Q9UMY1 257 aaKnown RBP8.44□□□□□ -1.06
USP3-210ENST00000559192 ANKRD36BQ8N2N9 1353 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 KINO60870 393 aaKnown RBP8.44□□□□□ -1.06
USP3-210ENST00000559192 HDGFL1Q5TGJ6 251 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 NAT10Q9H0A0 1025 aaKnown RBP8.44□□□□□ -1.06
USP3-210ENST00000559192 LRRFIP2Q9Y608 721 aaKnown RBP8.44□□□□□ -1.06
USP3-210ENST00000559192 LRRIQ1Q96JM4 1722 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 ABCC2Q92887 1545 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 GJB2P29033 226 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 HSP90B2PQ58FF3 399 aa8.44□□□□□ -1.06
USP3-210ENST00000559192 MEX3CQ5U5Q3 659 aaKnown RBP8.44□□□□□ -1.06
USP3-210ENST00000559192 ZBTB7BO15156 539 aaPredicted RBP8.43□□□□□ -1.06
USP3-210ENST00000559192 CHAMP1Q96JM3 812 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 KDM5AP29375 1690 aaKnown RBP8.43□□□□□ -1.06
USP3-210ENST00000559192 FYB1O15117 783 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 CD2BP2O95400 341 aaKnown RBP8.43□□□□□ -1.06
USP3-210ENST00000559192 CEP170Q5SW79 1584 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 TRIM35Q9UPQ4 493 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 TRAPPC8Q9Y2L5 1435 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 PES1O00541 588 aaKnown RBP8.43□□□□□ -1.06
USP3-210ENST00000559192 CPLX1O14810 134 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms