RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SNRKQ9NRH2 765 aa10.99□□□□□ -0.65
VPS13C-208ENST00000559119 KRT76Q01546 638 aa10.98□□□□□ -0.65
VPS13C-208ENST00000559119 CC2D2BQ6DHV5 1058 aa10.98□□□□□ -0.65
VPS13C-208ENST00000559119 MEN1O00255 615 aa10.97□□□□□ -0.65
VPS13C-208ENST00000559119 RNF144AP50876 292 aaPredicted RBP10.97□□□□□ -0.65
VPS13C-208ENST00000559119 PRICKLE2Q7Z3G6 844 aa10.97□□□□□ -0.65
VPS13C-208ENST00000559119 ESF1Q9H501 851 aaKnown RBP10.97□□□□□ -0.65
VPS13C-208ENST00000559119 SENP3-EIF4A1A0A087X0R7 540 aa10.96□□□□□ -0.65
VPS13C-208ENST00000559119 ERVK-9P63128 1117 aa10.96□□□□□ -0.65
VPS13C-208ENST00000559119 PCDHB11Q9Y5F2 797 aa10.96□□□□□ -0.65
VPS13C-208ENST00000559119 CYP2U1Q7Z449 544 aa10.94□□□□□ -0.66
VPS13C-208ENST00000559119 NLRP3Q96P20 1036 aa10.94□□□□□ -0.66
VPS13C-208ENST00000559119 A0A1W2PRU2 124 aa10.93□□□□□ -0.66
VPS13C-208ENST00000559119 GPR37L1O60883 481 aa10.93□□□□□ -0.66
VPS13C-208ENST00000559119 RHOQP17081 205 aa10.93□□□□□ -0.66
VPS13C-208ENST00000559119 GPC1P35052 558 aa10.93□□□□□ -0.66
VPS13C-208ENST00000559119 PRM3Q9NNZ6 103 aa10.93□□□□□ -0.66
VPS13C-208ENST00000559119 RNFT1Q5M7Z0 435 aa10.92□□□□□ -0.66
VPS13C-208ENST00000559119 SCTRP47872 440 aa10.91□□□□□ -0.66
VPS13C-208ENST00000559119 SLC27A3Q5K4L6 730 aa10.91□□□□□ -0.66
VPS13C-208ENST00000559119 CLN3Q13286 438 aa10.88□□□□□ -0.67
VPS13C-208ENST00000559119 SVOPQ8N4V2 548 aa10.88□□□□□ -0.67
VPS13C-208ENST00000559119 OSBPL3Q9H4L5 887 aa10.88□□□□□ -0.67
VPS13C-208ENST00000559119 ARHGEF10LQ9HCE6 1279 aa10.88□□□□□ -0.67
VPS13C-208ENST00000559119 CEP126Q9P2H0 1117 aa10.88□□□□□ -0.67
VPS13C-208ENST00000559119 TBC1D2BQ9UPU7 963 aa10.88□□□□□ -0.67
VPS13C-208ENST00000559119 MYCP01106 439 aaPredicted RBP10.87□□□□□ -0.67
VPS13C-208ENST00000559119 CUEDC1Q9NWM3 386 aaPredicted RBP10.87□□□□□ -0.67
VPS13C-208ENST00000559119 TRAK2O60296 914 aa10.86□□□□□ -0.67
VPS13C-208ENST00000559119 SLURP2P0DP57 97 aa10.86□□□□□ -0.67
VPS13C-208ENST00000559119 EIF4G2P78344 907 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS13C-208ENST00000559119 POU4F2Q12837 409 aa10.86□□□□□ -0.67
VPS13C-208ENST00000559119 RIPOR1Q6ZS17 1223 aa10.86□□□□□ -0.67
VPS13C-208ENST00000559119 ZNF385CQ66K41 422 aaPredicted RBP10.85□□□□□ -0.67
VPS13C-208ENST00000559119 GMCL1Q96IK5 515 aa10.85□□□□□ -0.67
VPS13C-208ENST00000559119 GRIP2Q9C0E4 1043 aa10.85□□□□□ -0.67
VPS13C-208ENST00000559119 FOXR1Q6PIV2 292 aa10.84□□□□□ -0.67
VPS13C-208ENST00000559119 TRIM22Q8IYM9 498 aa10.84□□□□□ -0.67
VPS13C-208ENST00000559119 GAS2L1Q99501 681 aaPredicted RBP10.84□□□□□ -0.67
VPS13C-208ENST00000559119 RAB6BQ9NRW1 208 aa10.84□□□□□ -0.67
VPS13C-208ENST00000559119 ADAMTS8Q9UP79 889 aa10.84□□□□□ -0.67
VPS13C-208ENST00000559119 DYRK1BQ9Y463 629 aa10.84□□□□□ -0.67
VPS13C-208ENST00000559119 GNRH1P01148 92 aa10.83□□□□□ -0.68
VPS13C-208ENST00000559119 NBPF10Q6P3W6 841 aaKnown RBP10.83□□□□□ -0.68
VPS13C-208ENST00000559119 NBPF15Q8N660 670 aa10.83□□□□□ -0.68
VPS13C-208ENST00000559119 ZNF837Q96EG3 531 aaPredicted RBP10.83□□□□□ -0.68
VPS13C-208ENST00000559119 CCDC85AQ96PX6 553 aaPredicted RBP10.83□□□□□ -0.68
VPS13C-208ENST00000559119 H7C1W4 665 aa10.82□□□□□ -0.68
VPS13C-208ENST00000559119 CDCA7Q9BWT1 371 aaPredicted RBP10.82□□□□□ -0.68
VPS13C-208ENST00000559119 SPATA31C2B4DYI2 1134 aa10.81□□□□□ -0.68
VPS13C-208ENST00000559119 RNF225M0QZC1 329 aaPredicted RBP10.81□□□□□ -0.68
VPS13C-208ENST00000559119 ADAMTS2O95450 1211 aa10.81□□□□□ -0.68
VPS13C-208ENST00000559119 SRSF11Q05519 484 aaKnown RBP10.81□□□□□ -0.68
VPS13C-208ENST00000559119 KCNMA1Q12791 1236 aa10.81□□□□□ -0.68
VPS13C-208ENST00000559119 WHAMMQ8TF30 809 aa10.81□□□□□ -0.68
VPS13C-208ENST00000559119 CNKSR1Q969H4 720 aa10.81□□□□□ -0.68
VPS13C-208ENST00000559119 IRF5Q13568 498 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 DBN1Q16643 649 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 SLFNL1Q499Z3 407 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 WDR44Q5JSH3 913 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 TAS1R3Q7RTX0 852 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 ESYT1Q9BSJ8 1104 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 TIMMDC1Q9NPL8 285 aa10.8□□□□□ -0.68
VPS13C-208ENST00000559119 WASLO00401 505 aaPredicted RBP10.79□□□□□ -0.68
VPS13C-208ENST00000559119 GAS6Q14393 721 aa10.79□□□□□ -0.68
VPS13C-208ENST00000559119 DOLKQ9UPQ8 538 aa10.79□□□□□ -0.68
VPS13C-208ENST00000559119 GPR25O00155 361 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 IL2RAP01589 272 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 GTF2E1P29083 439 aaPredicted RBP10.78□□□□□ -0.68
VPS13C-208ENST00000559119 MAP3K10Q02779 954 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 CENPCQ03188 943 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 USP4Q13107 963 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 TRERF1Q96PN7 1200 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 GDPD2Q9HCC8 539 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 MBIPQ9NS73 344 aa10.78□□□□□ -0.68
VPS13C-208ENST00000559119 ABL2P42684 1182 aa10.77□□□□□ -0.69
VPS13C-208ENST00000559119 VAC14Q08AM6 782 aa10.77□□□□□ -0.69
VPS13C-208ENST00000559119 RNF135Q8IUD6 432 aa10.77□□□□□ -0.69
VPS13C-208ENST00000559119 GTPBP3Q969Y2 492 aaKnown RBP10.77□□□□□ -0.69
VPS13C-208ENST00000559119 ARHGEF15O94989 841 aa10.76□□□□□ -0.69
VPS13C-208ENST00000559119 MARSP56192 900 aaKnown RBP10.76□□□□□ -0.69
VPS13C-208ENST00000559119 ESCO1Q5FWF5 840 aa10.76□□□□□ -0.69
VPS13C-208ENST00000559119 ZSCAN10Q96SZ4 725 aaPredicted RBP10.76□□□□□ -0.69
VPS13C-208ENST00000559119 F11P03951 625 aa10.75□□□□□ -0.69
VPS13C-208ENST00000559119 TSGA10IPQ3SY00 556 aa10.75□□□□□ -0.69
VPS13C-208ENST00000559119 OXLD1Q5BKU9 147 aa10.75□□□□□ -0.69
VPS13C-208ENST00000559119 LYPD4Q6UWN0 246 aa10.75□□□□□ -0.69
VPS13C-208ENST00000559119 PHTF2Q8N3S3 785 aa10.75□□□□□ -0.69
VPS13C-208ENST00000559119 XAGE2Q96GT9 111 aa10.75□□□□□ -0.69
VPS13C-208ENST00000559119 NUCKS1Q9H1E3 243 aaKnown RBP10.75□□□□□ -0.69
VPS13C-208ENST00000559119 RASSF7Q02833 373 aa10.74□□□□□ -0.69
VPS13C-208ENST00000559119 WASHC4Q2M389 1173 aa10.74□□□□□ -0.69
VPS13C-208ENST00000559119 GNASQ5JWF2 1037 aa10.74□□□□□ -0.69
VPS13C-208ENST00000559119 TMEM214Q6NUQ4 689 aaKnown RBP10.74□□□□□ -0.69
VPS13C-208ENST00000559119 TMEM151AQ8N4L1 468 aa10.74□□□□□ -0.69
VPS13C-208ENST00000559119 SIRT1Q96EB6 747 aa10.74□□□□□ -0.69
VPS13C-208ENST00000559119 CELA2BP08218 269 aaPredicted RBP10.73□□□□□ -0.69
VPS13C-208ENST00000559119 PHKA2P46019 1235 aa10.73□□□□□ -0.69
VPS13C-208ENST00000559119 ENAMQ9NRM1 1142 aa10.73□□□□□ -0.69
VPS13C-208ENST00000559119 GDF11O95390 407 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms