RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ZMYM1Q5SVZ6 1142 aa3.48□□□□□ -1.85
USP3-209ENST00000558925 NBPF14Q5TI25 921 aa3.48□□□□□ -1.85
USP3-209ENST00000558925 GIGYF2Q6Y7W6 1299 aaKnown RBP3.48□□□□□ -1.85
USP3-209ENST00000558925 KRI1Q8N9T8 703 aaKnown RBP3.48□□□□□ -1.85
USP3-209ENST00000558925 ZC3H15Q8WU90 426 aaKnown RBP3.48□□□□□ -1.85
USP3-209ENST00000558925 TIMELESSQ9UNS1 1208 aa3.48□□□□□ -1.85
USP3-209ENST00000558925 PTGIRP43119 386 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 DOC2BQ14184 412 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 PRPF38BQ5VTL8 546 aaKnown RBP3.47□□□□□ -1.85
USP3-209ENST00000558925 RIPOR1Q6ZS17 1223 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 ARMC2Q8NEN0 867 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 TSC1Q92574 1164 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 OXCT2Q9BYC2 517 aaPredicted RBP3.47□□□□□ -1.85
USP3-209ENST00000558925 LIMD1Q9UGP4 676 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 MKL2Q9ULH7 1088 aa3.47□□□□□ -1.85
USP3-209ENST00000558925 TULP1O00294 542 aaPredicted RBP3.46□□□□□ -1.86
USP3-209ENST00000558925 MX2P20592 715 aa3.46□□□□□ -1.86
USP3-209ENST00000558925 RNF144AP50876 292 aaPredicted RBP3.46□□□□□ -1.86
USP3-209ENST00000558925 BRPF1P55201 1214 aaPredicted RBP3.46□□□□□ -1.86
USP3-209ENST00000558925 RIC3Q7Z5B4 369 aa3.46□□□□□ -1.86
USP3-209ENST00000558925 SLC10A4Q96EP9 437 aa3.46□□□□□ -1.86
USP3-209ENST00000558925 GMCL1Q96IK5 515 aa3.46□□□□□ -1.86
USP3-209ENST00000558925 SLC24A3Q9HC58 644 aa3.46□□□□□ -1.86
USP3-209ENST00000558925 ERVH48-1M5A8F1 160 aa3.45□□□□□ -1.86
USP3-209ENST00000558925 RAB15P59190 212 aa3.45□□□□□ -1.86
USP3-209ENST00000558925 DHX9Q08211 1270 aaKnown RBP3.45□□□□□ -1.86
USP3-209ENST00000558925 TTLL12Q14166 644 aaPredicted RBP3.45□□□□□ -1.86
USP3-209ENST00000558925 RTL5Q5HYW3 569 aaPredicted RBP3.45□□□□□ -1.86
USP3-209ENST00000558925 ALYREFQ86V81 257 aaKnown RBP3.45□□□□□ -1.86
USP3-209ENST00000558925 KLRG1Q96E93 195 aa3.45□□□□□ -1.86
USP3-209ENST00000558925 ARHGAP9Q9BRR9 750 aa3.45□□□□□ -1.86
USP3-209ENST00000558925 KRTAP4-7Q9BYR0 210 aa3.45□□□□□ -1.86
USP3-209ENST00000558925 GTF3C3Q9Y5Q9 886 aa3.45□□□□□ -1.86
USP3-209ENST00000558925 LILRB3O75022 631 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 POU4F2Q12837 409 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 AMHR2Q16671 573 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 PDXDC2PQ6P474 469 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 FOXR1Q6PIV2 292 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 EDARADDQ8WWZ3 215 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 GPKOWQ92917 476 aaPredicted RBP eCLIP3.44□□□□□ -1.86
USP3-209ENST00000558925 GAS2L1Q99501 681 aaPredicted RBP3.44□□□□□ -1.86
USP3-209ENST00000558925 RRAGCQ9HB90 399 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 DYRK1BQ9Y463 629 aa3.44□□□□□ -1.86
USP3-209ENST00000558925 C2CD2LO14523 706 aa3.43□□□□□ -1.86
USP3-209ENST00000558925 UBAP2LQ14157 1087 aaKnown RBP3.43□□□□□ -1.86
USP3-209ENST00000558925 NEUROD2Q15784 382 aa3.43□□□□□ -1.86
USP3-209ENST00000558925 TMEM132AQ24JP5 1023 aa3.43□□□□□ -1.86
USP3-209ENST00000558925 RSPO4Q2I0M5 234 aaPredicted RBP3.43□□□□□ -1.86
USP3-209ENST00000558925 TRERF1Q96PN7 1200 aa3.43□□□□□ -1.86
USP3-209ENST00000558925 SCO2A0A1W2PP80 73 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 ZMYND10O75800 440 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 MAP2K3P46734 347 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 DGKGP49619 791 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 CTDSPL2Q05D32 466 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 NKAPLQ5M9Q1 402 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 ARTNQ5T4W7 220 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 MYSM1Q5VVJ2 828 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 FBXO31Q5XUX0 539 aaPredicted RBP3.42□□□□□ -1.86
USP3-209ENST00000558925 PARP9Q8IXQ6 854 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 ADAM32Q8TC27 787 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 LRRN4Q8WUT4 740 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 NUCKS1Q9H1E3 243 aaKnown RBP3.42□□□□□ -1.86
USP3-209ENST00000558925 CYLDQ9NQC7 956 aa3.42□□□□□ -1.86
USP3-209ENST00000558925 CDV3Q9UKY7 258 aaKnown RBP3.42□□□□□ -1.86
USP3-209ENST00000558925 NUTM2BA6NNL0 878 aaPredicted RBP3.41□□□□□ -1.86
USP3-209ENST00000558925 NUTM2EB1AL46 878 aaPredicted RBP3.41□□□□□ -1.86
USP3-209ENST00000558925 H7C1W4 665 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 LCE1DQ5T752 114 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 NUTM2DQ5VT03 806 aaPredicted RBP3.41□□□□□ -1.86
USP3-209ENST00000558925 NBPF10Q6P3W6 841 aaKnown RBP3.41□□□□□ -1.86
USP3-209ENST00000558925 ZBTB33Q86T24 672 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 NUTM2AQ8IVF1 878 aaPredicted RBP3.41□□□□□ -1.86
USP3-209ENST00000558925 NBPF15Q8N660 670 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 GOLGA2P5Q9HBQ8 144 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 GPBP1L1Q9HC44 474 aaPredicted RBP3.41□□□□□ -1.86
USP3-209ENST00000558925 ZFP64Q9NPA5 681 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 FKBPLQ9UIM3 349 aa3.41□□□□□ -1.86
USP3-209ENST00000558925 A0A1W2PRU2 124 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 ESPNB1AK53 854 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 MEN1O00255 615 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 GNB5O14775 395 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 BARGINQ6ZT62 677 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 BTBD6Q96KE9 485 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 CFHR5Q9BXR6 569 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 GRIP2Q9C0E4 1043 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 HCN2Q9UL51 889 aa3.4□□□□□ -1.87
USP3-209ENST00000558925 NSFL1CQ9UNZ2 370 aaKnown RBP3.4□□□□□ -1.87
USP3-209ENST00000558925 GPC1P35052 558 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 NR6A1Q15406 480 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 DIXDC1Q155Q3 683 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 TUSC1Q2TAM9 212 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 SLCO4C1Q6ZQN7 724 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 HELBQ8NG08 1087 aaPredicted RBP3.39□□□□□ -1.87
USP3-209ENST00000558925 TRIM11Q96F44 468 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 TPSG1Q9NRR2 321 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 GGA1Q9UJY5 639 aa3.39□□□□□ -1.87
USP3-209ENST00000558925 GDF2Q9UK05 429 aaPredicted RBP3.39□□□□□ -1.87
USP3-209ENST00000558925 ATP5J2-PTCD1G3V325 749 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 DYRK3O43781 588 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 F11P03951 625 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms